Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010956

Physical Location & Seq

Genomic Coordinates Reverse (-)

14360255 .. 14362511

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGTTCTGGGAATTTGATTAAGGCAATAATTAGATTGAAGAAGAGTAAACAAGGAACTGAAAAGAAAAAAACTAGTGCTGTGAAACCAAAAAAAGGTTCCAAGAAGAAGGGTACATCACTAGTTACTCGTAGTGAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGGCTAGAAAAAGCTTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTATCAACTGAGAAACAATCTGTGAAGAACCAAGCTGTGGTCACATTGAGGTATCTTCACTCATGGAGTAAAATACAGTCAGAGATAAAGGCTCGCCGAGTTTGCATGGTAACCGAATGGCGACTGAAGAATAAAAGATTAGAGCATCAGCAAAAGCTTGAGGCAAAGCTTCATGATGTTGAGGTTGAATGGAATGGTGGGTCAGAGACAAAAGATGAAATCTTGGAGAGGATACTTCAAAGGGAAGAAGCGACGATTAAGCGAGAAAGAGCCTTGGCATATGCTTTCTCTCATCAGTGGAAAGCTGATGGTAAGACTCAGTGGTTGGGAAGTTATGAGCTAGGAAACACTAATTGGGGTTGGAGCTGGAAAGAGCGTTGGATATCTGCTCGGCCTTGGGAAGTAAGATATTCAGTGACTCCTAAGAAACCAAAGAGCTCAAAGACAGACTCAAATTCACCAGCAAAGAGAACAGTGTCATTATCATCAGTTCCAGCCAAAACTCCGTTTCCTGGAGCTAGAAACACAGTGAAACCGCGGAGATTGTCATTTCCAGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

263

Amino Acids

30.14

Weight (kDa)

10.64

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33990
fragaria_vesca	FvH4_3g08170 FvH4_3g08170 FvH4_3g08170 FvH4_3g08170
malus_domestica	MD05G1305200.v1.1 MD10G1284500.v1.1
prunus_persica	Prupe.4G057000_v2.0.a1 Prupe.4G057000_v2.0.a1
pyrus_communis	pycom05g28240 pycom10g23760
rosa_chinensis	RchiOBHm_Chr5g0010021
rosa_laevigata	RLG00000031719
rosa_multiflora	Rmu_sc0002275.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066150
rosa_samantha	Rh5AG079400 Rh5BG074200 Rh5CG086800 Rh5DG074900
rosa_wichuraiana	Rw5G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccII	CGCG	1 cut(s)	766
AciI	CCGC	2 cut(s)	764, 766
AcsI	RAATTY	2 cut(s)	13, 682
AcuI	CTGAAG	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	202
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	3 cut(s)	95, 265, 740
AgsI	TTSAA	3 cut(s)	40, 416, 467
AhlI	ACTAGT	2 cut(s)	74, 121
AjnI	CCWGG	2 cut(s)	739, 781
AjuI	GAANNNNNNNTTGG	4 cut(s)	82, 114, 565, 597
AluBI	AGCT	9 cut(s)	195, 263, 385, 397, 533, 568, 594, 666, 746
AluI	AGCT	9 cut(s)	195, 263, 385, 397, 533, 568, 594, 666, 746
Alw21I	GWGCWC	1 cut(s)	668
Alw26I	GTCTC	1 cut(s)	428
AoxI	GGCC	1 cut(s)	620
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	2 cut(s)	13, 682
AsuHPI	GGTGA	1 cut(s)	678
BanII	GRGCYC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	668
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	2 cut(s)	741, 783
BciVI	GTATCC	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	428
BcuI	ACTAGT	2 cut(s)	74, 121
BfaI	CTAG	5 cut(s)	75, 122, 186, 569, 747
BfuI	GTATCC	1 cut(s)	453
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	741, 783
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	2 cut(s)	741, 783
BmsI	GCATC	1 cut(s)	382
BpmI	CTGGAG	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	501, 623, 764
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 265, 740
BseBI	CCWGG	2 cut(s)	741, 783
BseDI	CCNNGG	3 cut(s)	501, 623, 764
BseLI	CCNNNNNNNGG	3 cut(s)	95, 265, 740
BseMII	CTCAG	2 cut(s)	228, 560
BseXI	GCAGC	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	766
BshFI	GGCC	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	668
BslI	CCNNNNNNNGG	3 cut(s)	95, 265, 740
BsmAI	GTCTC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	622
Bsp1286I	GDGCHC	1 cut(s)	668
BspACI	CCGC	2 cut(s)	764, 766
BspANI	GGCC	1 cut(s)	622
BspCNI	CTCAG	2 cut(s)	229, 559
BspFNI	CGCG	1 cut(s)	766
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	501, 623, 764
BssNI	GRCGYC	1 cut(s)	202
BssT1I	CCWWGG	2 cut(s)	501, 623
Bst2UI	CCWGG	2 cut(s)	741, 783
Bst4CI	ACNGT	3 cut(s)	306, 703, 757
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	3 cut(s)	237, 546, 651
BstDSI	CCRYGG	1 cut(s)	764
BstEII	GGTNACC	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	766
BstMAI	GTCTC	1 cut(s)	428
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 182, 330
BstNI	CCWGG	2 cut(s)	741, 783
BstPI	GGTNACC	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	739, 781
BstUI	CGCG	1 cut(s)	766
BstV1I	GCAGC	1 cut(s)	133
BsuI	GTATCC	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	622
BtgI	CCRYGG	1 cut(s)	764
BtsIMutI	CAGTG	5 cut(s)	530, 554, 648, 708, 762
Cac8I	GCNNGC	1 cut(s)	322
CciI	TCATGA	1 cut(s)	400
Cfr42I	CCGCGG	1 cut(s)	767
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	3 cut(s)	291, 334, 401
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	3 cut(s)	237, 546, 651
DraI	TTTAAA	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	666
Eco130I	CCWWGG	2 cut(s)	501, 623
Eco24I	GRGCYC	1 cut(s)	668
Eco32I	GATATC	1 cut(s)	612
Eco53kI	GAGCTC	1 cut(s)	666
Eco57I	CTGAAG	1 cut(s)	374
Eco91I	GGTNACC	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	666
EcoO65I	GGTNACC	1 cut(s)	337
EcoRII	CCWGG	2 cut(s)	739, 781
EcoRV	GATATC	1 cut(s)	612
EcoT14I	CCWWGG	2 cut(s)	501, 623
EcoT38I	GRGCYC	1 cut(s)	668
ErhI	CCWWGG	2 cut(s)	501, 623
FaeI	CATG	3 cut(s)	294, 337, 404
FaiI	YATR	7 cut(s)	180, 292, 335, 402, 508, 510, 564
FatI	CATG	3 cut(s)	290, 333, 400
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	147
FriOI	GRGCYC	1 cut(s)	668
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	5 cut(s)	75, 122, 186, 569, 747
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	762
HaeIII	GGCC	1 cut(s)	622
HgaI	GACGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	3 cut(s)	294, 337, 404
HindIII	AAGCTT	3 cut(s)	193, 383, 395
HinfI	GANTC	4 cut(s)	157, 544, 646, 677
HphI	GGTGA	1 cut(s)	678
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	4 cut(s)	156, 162, 310, 433
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	1 cut(s)	50
Hpy99I	CGWCG	1 cut(s)	484
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	3 cut(s)	306, 703, 757
HpyCH4V	TGCA	2 cut(s)	218, 333
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 182, 330
HpyF3I	CTNAG	3 cut(s)	237, 546, 651
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	3 cut(s)	294, 337, 404
KspI	CCGCGG	1 cut(s)	767
LmnI	GCTCC	2 cut(s)	591, 743
LpnPI	CCDG	6 cut(s)	580, 702, 726, 735, 753, 768
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	5 cut(s)	75, 122, 186, 569, 747
MaeIII	GTNAC	4 cut(s)	124, 268, 337, 643
MboII	GAAGA	7 cut(s)	52, 55, 118, 265, 275, 367, 485
MhlI	GDGCHC	1 cut(s)	668
MluCI	AATT	5 cut(s)	13, 30, 213, 580, 682
MlyI	GAGTC	3 cut(s)	538, 640, 671
MmeI	TCCRAC	2 cut(s)	569, 587
MnlI	CCTC	5 cut(s)	130, 270, 382, 403, 450
MseI	TTAA	3 cut(s)	21, 171, 486
MspA1I	CMGCKG	1 cut(s)	766
MspR9I	CCNGG	2 cut(s)	741, 783
MvaI	CCWGG	2 cut(s)	741, 783
MvnI	CGCG	1 cut(s)	766
MwoI	GCNNNNNNNGC	3 cut(s)	173, 182, 330
NdeI	CATATG	1 cut(s)	508
NlaIII	CATG	3 cut(s)	294, 337, 404
NlaIV	GGNNCC	1 cut(s)	100
NmeAIII	GCCGAG	2 cut(s)	350, 598
NmuCI	GTSAC	2 cut(s)	268, 643
PagI	TCATGA	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	157
PflMI	CCANNNNNTGG	1 cut(s)	265
PfoI	TCCNGGA	1 cut(s)	739
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	3 cut(s)	538, 640, 671
PpsI	GAGTC	3 cut(s)	538, 640, 671
Psp124BI	GAGCTC	1 cut(s)	668
Psp6I	CCWGG	2 cut(s)	739, 781
PspEI	GGTNACC	1 cut(s)	337
PspGI	CCWGG	2 cut(s)	739, 781
PspN4I	GGNNCC	1 cut(s)	100
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	668
SacII	CCGCGG	1 cut(s)	767
SaqAI	TTAA	3 cut(s)	21, 171, 486
SatI	GCNGC	1 cut(s)	147
SchI	GAGTC	3 cut(s)	538, 640, 671
ScrFI	CCNGG	2 cut(s)	741, 783
SduI	GDGCHC	1 cut(s)	668
SfaNI	GCATC	1 cut(s)	382
Sfr303I	CCGCGG	1 cut(s)	767
SgrBI	CCGCGG	1 cut(s)	767
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SpeI	ACTAGT	2 cut(s)	74, 121
Sse9I	AATT	5 cut(s)	13, 30, 213, 580, 682
SsiI	CCGC	2 cut(s)	764, 766
SspMI	CTAG	5 cut(s)	75, 122, 186, 569, 747
SstI	GAGCTC	1 cut(s)	668
StyD4I	CCNGG	2 cut(s)	739, 781
StyI	CCWWGG	2 cut(s)	501, 623
TaaI	ACNGT	3 cut(s)	306, 703, 757
TasI	AATT	5 cut(s)	13, 30, 213, 580, 682
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	3 cut(s)	21, 171, 486
Tru9I	TTAA	3 cut(s)	21, 171, 486
TscAI	CASTG	5 cut(s)	530, 554, 648, 708, 762
TseFI	GTSAC	2 cut(s)	268, 643
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	2 cut(s)	268, 643
TspDTI	ATGAA	2 cut(s)	389, 459
TspGWI	ACGGA	1 cut(s)	723
TspRI	CASTG	5 cut(s)	530, 554, 648, 708, 762
Van91I	CCANNNNNTGG	1 cut(s)	265
XapI	RAATTY	2 cut(s)	13, 682
XspI	CTAG	5 cut(s)	75, 122, 186, 569, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.