Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010956

Physical Location & Seq

Genomic Coordinates Forward (+)

2731370 .. 2734734

Gene Structure 3365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G057000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGTTCTGGATATTGGTTTAAGGCATTAATCGGCTTAAAGAAATCCAAGGATGGCAGTTCAAAACGATTGAAGGGACCTTCAGTTAATGGAAAATCAAATTCCATAAAATTGAAAAAGTCTAGTTTTGCAAATGGTAAAAATCTTGGATTGCCAGATGAGGAAATAGCTGCAATTCGAATTCAGACTGCTTTCCGTGCATATGTGGCTAGAAAAGCTTTACGCCGCTTGAAAGGGATTGTTCGATTGCAAATACTGACCCAAGCTTATCCTGTTACAAAGCAAGCCACAACTACATTGAGCTATCTTCATTCATGGAGCAGAATACAGGATGAGATTAGAGCTCGTCGACTTTATATGGTAACGGAAGGACGGATCAAACAGAAGAAATTAGAGAATCAACATAAACTTGAGGCGAAGCTTCATGACATAGAGGCGGAATGGTGTGGTGGATCCGAAACAATGGATGAAATTCTTGCAAGGATATATCAAAGAGAAGAAGCAGCAGTTAAGCGTGAGCGGGCTATGGCATATGCCTTTTCTCATCAGTGGAGGGCCAACTGTAGTCAGAGCCAAGGATTGGGTAATTATGAACTTGGCAAAGCTAATTGGGGTTGGAGCTGGAAAGAACGATGGATTGCTGCTCGTCCATGGGAAAGCCGTGTGCAGTCACCTAGCCCAAAGAAAGTACCGAGTAAGCAAGCTAGCAAGGTTGGTAAAAACACAAATTCACCAACGCCAAAAACTCCAGTTTCAGTCAAGCTCCCTTCATCAAATGGTAAGGGAACTACAAGGGCTCGGAGATTGTCTTACACAGCAGATGAAGTAAAACCGGTTGCACGTGCAGAGGGCATTAAAACTGAAGAGAGGAGCACTCAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

295

Amino Acids

33.2

Weight (kDa)

10.33

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33990
fragaria_vesca	FvH4_3g08170 FvH4_3g08170 FvH4_3g08170 FvH4_3g08170
malus_domestica	MD05G1305200.v1.1 MD10G1284500.v1.1
prunus_persica	Prupe.4G057000_v2.0.a1 Prupe.4G057000_v2.0.a1
pyrus_communis	pycom05g28240 pycom10g23760
rosa_chinensis	RchiOBHm_Chr5g0010021
rosa_laevigata	RLG00000031719
rosa_multiflora	Rmu_sc0002275.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066150
rosa_samantha	Rh5AG079400 Rh5BG074200 Rh5CG086800 Rh5DG074900
rosa_wichuraiana	Rw5G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	580
AccBSI	CCGCTC	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	349
AciI	CCGC	3 cut(s)	226, 437, 520
AclWI	GGATC	3 cut(s)	383, 447, 460
AcsI	RAATTY	4 cut(s)	100, 180, 471, 727
AcuI	CTGAAG	2 cut(s)	66, 882
AcvI	CACGTG	1 cut(s)	842
AfaI	GTAC	1 cut(s)	690
AfiI	CCNNNNNNNGG	1 cut(s)	580
AgeI	ACCGGT	1 cut(s)	832
AgsI	TTSAA	4 cut(s)	63, 73, 115, 232
Alw21I	GWGCWC	2 cut(s)	346, 875
AlwI	GGATC	3 cut(s)	383, 447, 460
AoxI	GGCC	1 cut(s)	555
ApeKI	GCWGC	3 cut(s)	170, 503, 641
ApoI	RAATTY	4 cut(s)	100, 180, 471, 727
AseI	ATTAAT	1 cut(s)	29
AsiGI	ACCGGT	1 cut(s)	832
AspS9I	GGNCC	2 cut(s)	77, 555
AsuHPI	GGTGA	2 cut(s)	663, 723
AsuII	TTCGAA	1 cut(s)	178
AsuNHI	GCTAGC	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	452
BanII	GRGCYC	2 cut(s)	346, 799
BbrPI	CACGTG	1 cut(s)	842
Bbv12I	GWGCWC	2 cut(s)	346, 875
BbvI	GCAGC	3 cut(s)	157, 515, 628
BccI	CCATC	2 cut(s)	47, 627
BceAI	ACGGC	1 cut(s)	645
BfaI	CTAG	4 cut(s)	123, 210, 675, 705
BfmI	CTRYAG	1 cut(s)	562
BisI	GCNGC	4 cut(s)	171, 226, 504, 642
BlsI	GCNGC	4 cut(s)	172, 227, 505, 643
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	77, 555
BmiI	GGNNCC	2 cut(s)	78, 454
BmtI	GCTAGC	1 cut(s)	708
BplI	GAGNNNNNCTC	1 cut(s)	859
BpmI	CTGGAG	1 cut(s)	732
Bpu14I	TTCGAA	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	431
BsaAI	YACGTR	1 cut(s)	842
BsaJI	CCNNGG	3 cut(s)	48, 574, 650
BsaWI	WCCGGW	1 cut(s)	832
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse118I	RCCGGY	1 cut(s)	832
Bse1I	ACTGG	1 cut(s)	749
BseDI	CCNNGG	3 cut(s)	48, 574, 650
BseGI	GGATG	3 cut(s)	58, 337, 472
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseNI	ACTGG	1 cut(s)	749
BseRI	GAGGAG	1 cut(s)	883
BseXI	GCAGC	3 cut(s)	157, 515, 628
BsgI	GTGCAG	2 cut(s)	686, 864
BshFI	GGCC	1 cut(s)	557
BshTI	ACCGGT	1 cut(s)	832
BsiHKAI	GWGCWC	2 cut(s)	346, 875
BsiSI	CCGG	1 cut(s)	833
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	557
Bsp119I	TTCGAA	1 cut(s)	178
Bsp1286I	GDGCHC	3 cut(s)	346, 799, 875
Bsp143I	GATC	2 cut(s)	375, 452
Bsp19I	CCATGG	1 cut(s)	650
BspACI	CCGC	3 cut(s)	226, 437, 520
BspANI	GGCC	1 cut(s)	557
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	2 cut(s)	78, 454
BspOI	GCTAGC	1 cut(s)	708
BspPI	GGATC	3 cut(s)	383, 447, 460
BspT104I	TTCGAA	1 cut(s)	178
BsrBI	CCGCTC	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	832
BsrI	ACTGG	1 cut(s)	749
BssAI	RCCGGY	1 cut(s)	832
BssECI	CCNNGG	3 cut(s)	48, 574, 650
BssMI	GATC	2 cut(s)	375, 452
BssT1I	CCWWGG	3 cut(s)	48, 574, 650
Bst4CI	ACNGT	1 cut(s)	563
Bst6I	CTCTTC	1 cut(s)	858
BstBAI	YACGTR	1 cut(s)	842
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	4 cut(s)	285, 522, 702, 706
BstDEI	CTNAG	1 cut(s)	876
BstDSI	CCRYGG	1 cut(s)	650
BstF5I	GGATG	3 cut(s)	58, 337, 472
BstKTI	GATC	2 cut(s)	378, 455
BstMBI	GATC	2 cut(s)	375, 452
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 206, 215
BstSFI	CTRYAG	1 cut(s)	562
BstV1I	GCAGC	3 cut(s)	157, 515, 628
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	557
BtgI	CCRYGG	1 cut(s)	650
BtsCI	GGATG	3 cut(s)	58, 337, 472
BtsIMutI	CAGTG	1 cut(s)	554
Cac8I	GCNNGC	4 cut(s)	285, 522, 702, 706
CciI	TCATGA	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	832
Cfr13I	GGNCC	2 cut(s)	77, 555
Csp6I	GTAC	1 cut(s)	689
CspAI	ACCGGT	1 cut(s)	832
CviAII	CATG	3 cut(s)	315, 425, 651
CviQI	GTAC	1 cut(s)	689
DdeI	CTNAG	1 cut(s)	876
DpnI	GATC	2 cut(s)	377, 454
DpnII	GATC	2 cut(s)	375, 452
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
EciI	GGCGGA	1 cut(s)	452
Ecl136II	GAGCTC	1 cut(s)	344
Eco130I	CCWWGG	3 cut(s)	48, 574, 650
Eco24I	GRGCYC	2 cut(s)	346, 799
Eco47I	GGWCC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	344
Eco57I	CTGAAG	2 cut(s)	66, 882
Eco72I	CACGTG	1 cut(s)	842
EcoICRI	GAGCTC	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	180
EcoT14I	CCWWGG	3 cut(s)	48, 574, 650
EcoT38I	GRGCYC	2 cut(s)	346, 799
ErhI	CCWWGG	3 cut(s)	48, 574, 650
FaeI	CATG	3 cut(s)	318, 428, 654
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	3 cut(s)	314, 424, 650
FauI	CCCGC	1 cut(s)	513
FauNDI	CATATG	2 cut(s)	202, 532
FblI	GTMKAC	1 cut(s)	349
Fnu4HI	GCNGC	4 cut(s)	171, 226, 504, 642
FokI	GGATG	3 cut(s)	65, 344, 479
FriOI	GRGCYC	2 cut(s)	346, 799
Fsp4HI	GCNGC	4 cut(s)	171, 226, 504, 642
FspBI	CTAG	4 cut(s)	123, 210, 675, 705
GluI	GCNGC	4 cut(s)	171, 226, 504, 642
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	1 cut(s)	557
HapII	CCGG	1 cut(s)	833
Hin1II	CATG	3 cut(s)	318, 428, 654
HincII	GTYRAC	1 cut(s)	350
HindII	GTYRAC	1 cut(s)	350
HindIII	AAGCTT	3 cut(s)	216, 264, 419
HinfI	GANTC	1 cut(s)	397
HpaII	CCGG	1 cut(s)	833
HphI	GGTGA	2 cut(s)	663, 723
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	5 cut(s)	186, 457, 570, 801, 879
Hpy188III	TCNNGA	2 cut(s)	9, 425
Hpy8I	GTNNAC	1 cut(s)	350
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	4 cut(s)	67, 90, 362, 777
HpyCH4III	ACNGT	1 cut(s)	563
HpyCH4IV	ACGT	1 cut(s)	841
HpyCH4V	TGCA	8 cut(s)	131, 173, 200, 250, 479, 667, 839, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 206, 215
HpyF3I	CTNAG	1 cut(s)	876
HpySE526I	ACGT	1 cut(s)	841
Hsp92II	CATG	3 cut(s)	318, 428, 654
Kzo9I	GATC	2 cut(s)	375, 452
LmnI	GCTCC	4 cut(s)	318, 618, 768, 870
LpnPI	CCDG	6 cut(s)	168, 285, 314, 607, 762, 846
Lsp1109I	GCAGC	3 cut(s)	157, 515, 628
MaeI	CTAG	4 cut(s)	123, 210, 675, 705
MaeII	ACGT	1 cut(s)	841
MaeIII	GTNAC	3 cut(s)	274, 361, 669
MalI	GATC	2 cut(s)	377, 454
MbiI	CCGCTC	1 cut(s)	520
MboI	GATC	2 cut(s)	375, 452
MboII	GAAGA	4 cut(s)	299, 397, 509, 875
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	3 cut(s)	346, 799, 875
MluCI	AATT	9 cut(s)	100, 110, 174, 180, 389, 471, 586, 607, 727
MmeI	TCCRAC	1 cut(s)	596
MnlI	CCTC	6 cut(s)	154, 406, 427, 546, 841, 861
MseI	TTAA	6 cut(s)	21, 29, 38, 87, 510, 855
MspI	CCGG	1 cut(s)	833
MwoI	GCNNNNNNNGC	3 cut(s)	197, 206, 215
NcoI	CCATGG	1 cut(s)	650
NdeI	CATATG	2 cut(s)	202, 532
NdeII	GATC	2 cut(s)	375, 452
NheI	GCTAGC	1 cut(s)	704
NlaIII	CATG	3 cut(s)	318, 428, 654
NlaIV	GGNNCC	2 cut(s)	78, 454
NmuCI	GTSAC	1 cut(s)	669
NspV	TTCGAA	1 cut(s)	178
PagI	TCATGA	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	397
PflMI	CCANNNNNTGG	1 cut(s)	580
PinAI	ACCGGT	1 cut(s)	832
PkrI	GCNGC	4 cut(s)	172, 227, 505, 643
PmaCI	CACGTG	1 cut(s)	842
PmlI	CACGTG	1 cut(s)	842
Ppu21I	YACGTR	1 cut(s)	842
PpuMI	RGGWCCY	1 cut(s)	77
PshBI	ATTAAT	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	77
PspCI	CACGTG	1 cut(s)	842
PspN4I	GGNNCC	2 cut(s)	78, 454
PspPI	GGNCC	2 cut(s)	77, 555
PspPPI	RGGWCCY	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	1 cut(s)	690
RsaNI	GTAC	1 cut(s)	689
SacI	GAGCTC	1 cut(s)	346
SalI	GTCGAC	1 cut(s)	348
SaqAI	TTAA	6 cut(s)	21, 29, 38, 87, 510, 855
SatI	GCNGC	4 cut(s)	171, 226, 504, 642
Sau3AI	GATC	2 cut(s)	375, 452
Sau96I	GGNCC	2 cut(s)	77, 555
SduI	GDGCHC	3 cut(s)	346, 799, 875
SfcI	CTRYAG	1 cut(s)	562
SfuI	TTCGAA	1 cut(s)	178
SinI	GGWCC	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	9 cut(s)	100, 110, 174, 180, 389, 471, 586, 607, 727
SsiI	CCGC	3 cut(s)	226, 437, 520
SspMI	CTAG	4 cut(s)	123, 210, 675, 705
SstI	GAGCTC	1 cut(s)	346
StyI	CCWWGG	3 cut(s)	48, 574, 650
TaaI	ACNGT	1 cut(s)	563
TaiI	ACGT	1 cut(s)	844
TaqI	TCGA	3 cut(s)	178, 244, 349
TasI	AATT	9 cut(s)	100, 110, 174, 180, 389, 471, 586, 607, 727
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	6 cut(s)	21, 29, 38, 87, 510, 855
Tru9I	TTAA	6 cut(s)	21, 29, 38, 87, 510, 855
TscAI	CASTG	1 cut(s)	554
TseFI	GTSAC	1 cut(s)	669
TseI	GCWGC	3 cut(s)	170, 503, 641
Tsp45I	GTSAC	1 cut(s)	669
TspDTI	ATGAA	7 cut(s)	299, 303, 413, 483, 606, 759, 837
TspGWI	ACGGA	3 cut(s)	185, 380, 388
TspRI	CASTG	1 cut(s)	554
Van91I	CCANNNNNTGG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	77
VspI	ATTAAT	1 cut(s)	29
XapI	RAATTY	4 cut(s)	100, 180, 471, 727
XmiI	GTMKAC	1 cut(s)	349
XspI	CTAG	4 cut(s)	123, 210, 675, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.