Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010956

Physical Location & Seq

Genomic Coordinates Reverse (-)

29029457 .. 29031423

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGTTCCGGGTGTTGGTTTAAGGTATTTTTCGGCCCAAAGAAATCAAAGGACGACAGTTCAAAACAGTTGAAGGGATCTTCAGCTCATGGAAAATCAAGCTCCATAAAATTGACAAAGTCTACTTTTGCGAATGGTAAAAATATTGGATTGCCAATTGAGGATATCGCTGCAATTCGGATTCAGACCGCTTTCCGTGCATATGTGGCTAGAAAATCGTTACGGCGTTTGAAAGGGATTGTAAGATTGCAAATAATGACCCAAGCTTATCCTGTTACAAAGCAAACTACAACTACATTGAGCTATCTTCATTCATGGAGCAAAATACAGGCTGAGGTTAAAGCTCGCCGACTCTGTATGGTAACAGAAGGACGGATCAAGCAGAAGAAAATAGAGAGTCAACAAAAACTTGAGGCAAAGCTTCATGAAATAGAGGCGGAGTGGTGTGGTGGTTCTGAAACAATGGATGAAATTCTTGCAAGGATATATCAAAGAGAAGAAGCAGCAGTTAAGCGCGAGCGGGCTATGGCATATGCATTTTCTCATCAGTGGAGGGCCAACTGTAGTCAGAACCAAAGCTTGGGTAATTATGAACTCGGTAAAGCTAATTGGGGATGGAGCTGGAAGGAGCGCTGGATTGCTGCTCGCCCCTGGGAAAGCCGTGTGCAGTCACCTAGTCCAAGAAAAGTGCAGAGTAAGCAAGCAAGCCCAGTTGGTAAGAACATAAATTCACCAACGCCAAAATCTGCGGTTTTAGTTAAACTTCCTTCATCAAATGGTAAGCCAACTACAAAGGCTCGGAGATTGTCTTACTCAGCTGTCGAAGAAAAATCAGCGGCAACTGCAGAGAGCATTAAAACTGAAGAAAAAACACTCAGAAATGAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

297

Amino Acids

33.36

Weight (kDa)

10.13

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33990
fragaria_vesca	FvH4_3g08170 FvH4_3g08170 FvH4_3g08170 FvH4_3g08170
malus_domestica	MD05G1305200.v1.1 MD10G1284500.v1.1
prunus_persica	Prupe.4G057000_v2.0.a1 Prupe.4G057000_v2.0.a1
pyrus_communis	pycom05g28240 pycom10g23760
rosa_chinensis	RchiOBHm_Chr5g0010021
rosa_laevigata	RLG00000031719
rosa_multiflora	Rmu_sc0002275.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066150
rosa_samantha	Rh5AG079400 Rh5BG074200 Rh5CG086800 Rh5DG074900
rosa_wichuraiana	Rw5G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	580
AccBSI	CCGCTC	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	122
AccII	CGCG	1 cut(s)	516
AciI	CCGC	5 cut(s)	189, 437, 520, 749, 836
AclWI	GGATC	2 cut(s)	85, 383
AcsI	RAATTY	2 cut(s)	471, 727
AcuI	CTGAAG	2 cut(s)	66, 882
AfeI	AGCGCT	1 cut(s)	632
AfiI	CCNNNNNNNGG	2 cut(s)	15, 580
AgsI	TTSAA	3 cut(s)	63, 73, 232
AjnI	CCWGG	1 cut(s)	650
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
AlwI	GGATC	2 cut(s)	85, 383
Aor51HI	AGCGCT	1 cut(s)	632
AoxI	GGCC	2 cut(s)	34, 555
ApeKI	GCWGC	3 cut(s)	170, 503, 641
ApoI	RAATTY	2 cut(s)	471, 727
AspLEI	GCGC	2 cut(s)	516, 633
AspS9I	GGNCC	2 cut(s)	35, 555
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	663, 723
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	157, 515, 628
BccI	CCATC	1 cut(s)	609
BceAI	ACGGC	2 cut(s)	239, 645
BciT130I	CCWGG	1 cut(s)	652
BcnI	CCSGG	1 cut(s)	10
BfaI	CTAG	2 cut(s)	210, 675
BfmI	CTRYAG	2 cut(s)	562, 843
BfoI	RGCGCY	1 cut(s)	634
BisI	GCNGC	4 cut(s)	171, 504, 642, 837
BlsI	GCNGC	4 cut(s)	172, 505, 643, 838
Bme1390I	CCNGG	2 cut(s)	10, 652
BmgT120I	GGNCC	2 cut(s)	35, 555
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	10, 652
BmrI	ACTGGG	1 cut(s)	704
BmuI	ACTGGG	1 cut(s)	704
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	650, 651
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 580
Bse1I	ACTGG	1 cut(s)	710
BseBI	CCWGG	1 cut(s)	652
BseDI	CCNNGG	2 cut(s)	650, 651
BseGI	GGATG	2 cut(s)	472, 620
BseLI	CCNNNNNNNGG	2 cut(s)	15, 580
BseMII	CTCAG	3 cut(s)	324, 828, 889
BseNI	ACTGG	1 cut(s)	710
BseXI	GCAGC	3 cut(s)	157, 515, 628
BsgI	GTGCAG	2 cut(s)	686, 710
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	2 cut(s)	36, 557
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	15, 580
BsnI	GGCC	2 cut(s)	36, 557
Bsp143I	GATC	2 cut(s)	77, 375
BspACI	CCGC	5 cut(s)	189, 437, 520, 749, 836
BspANI	GGCC	2 cut(s)	36, 557
BspCNI	CTCAG	3 cut(s)	325, 827, 888
BspFNI	CGCG	1 cut(s)	516
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	7
BspMAI	CTGCAG	1 cut(s)	847
BspPI	GGATC	2 cut(s)	85, 383
BsrBI	CCGCTC	1 cut(s)	520
BsrI	ACTGG	1 cut(s)	710
BssECI	CCNNGG	2 cut(s)	650, 651
BssMI	GATC	2 cut(s)	77, 375
Bst2UI	CCWGG	1 cut(s)	652
Bst4CI	ACNGT	3 cut(s)	59, 69, 563
BstC8I	GCNNGC	6 cut(s)	346, 518, 522, 646, 702, 706
BstDEI	CTNAG	3 cut(s)	333, 814, 875
BstF5I	GGATG	2 cut(s)	472, 620
BstFNI	CGCG	1 cut(s)	516
BstH2I	RGCGCY	1 cut(s)	634
BstHHI	GCGC	2 cut(s)	516, 633
BstKTI	GATC	2 cut(s)	80, 378
BstMBI	GATC	2 cut(s)	77, 375
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 206, 697, 842
BstNI	CCWGG	1 cut(s)	652
BstSCI	CCNGG	2 cut(s)	8, 650
BstSFI	CTRYAG	2 cut(s)	562, 843
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	3 cut(s)	157, 515, 628
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	36, 557
BtsCI	GGATG	2 cut(s)	472, 620
BtsIMutI	CAGTG	1 cut(s)	554
Cac8I	GCNNGC	6 cut(s)	346, 518, 522, 646, 702, 706
CciI	TCATGA	1 cut(s)	424
CfoI	GCGC	2 cut(s)	516, 633
Cfr13I	GGNCC	2 cut(s)	35, 555
CviAII	CATG	3 cut(s)	89, 315, 425
DdeI	CTNAG	3 cut(s)	333, 814, 875
DpnI	GATC	2 cut(s)	79, 377
DpnII	GATC	2 cut(s)	77, 375
EciI	GGCGGA	1 cut(s)	452
Eco32I	GATATC	1 cut(s)	166
Eco47III	AGCGCT	1 cut(s)	632
Eco57I	CTGAAG	2 cut(s)	66, 882
EcoRII	CCWGG	1 cut(s)	650
EcoRV	GATATC	1 cut(s)	166
EcoT22I	ATGCAT	1 cut(s)	538
FaeI	CATG	3 cut(s)	92, 318, 428
FatI	CATG	3 cut(s)	88, 314, 424
FauI	CCCGC	1 cut(s)	513
FauNDI	CATATG	2 cut(s)	202, 532
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	4 cut(s)	171, 504, 642, 837
FokI	GGATG	2 cut(s)	479, 627
Fsp4HI	GCNGC	4 cut(s)	171, 504, 642, 837
FspBI	CTAG	2 cut(s)	210, 675
GlaI	GCGC	2 cut(s)	515, 632
GluI	GCNGC	4 cut(s)	171, 504, 642, 837
HaeII	RGCGCY	1 cut(s)	634
HaeIII	GGCC	2 cut(s)	36, 557
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	2 cut(s)	516, 633
Hin1II	CATG	3 cut(s)	92, 318, 428
Hin6I	GCGC	2 cut(s)	514, 631
HinP1I	GCGC	2 cut(s)	514, 631
HincII	GTYRAC	1 cut(s)	401
HindII	GTYRAC	1 cut(s)	401
HindIII	AAGCTT	3 cut(s)	264, 419, 577
HinfI	GANTC	3 cut(s)	181, 351, 397
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	2 cut(s)	663, 723
Hpy166II	GTNNAC	2 cut(s)	123, 401
Hpy188I	TCNGA	6 cut(s)	180, 186, 457, 570, 801, 878
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	2 cut(s)	123, 401
HpyAV	CCTTC	4 cut(s)	67, 362, 619, 777
HpyCH4III	ACNGT	3 cut(s)	59, 69, 563
HpyCH4V	TGCA	8 cut(s)	173, 200, 250, 479, 536, 667, 691, 845
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 206, 697, 842
HpyF3I	CTNAG	3 cut(s)	333, 814, 875
Hsp92II	CATG	3 cut(s)	92, 318, 428
HspAI	GCGC	2 cut(s)	514, 631
Kzo9I	GATC	2 cut(s)	77, 375
LmnI	GCTCC	4 cut(s)	107, 318, 618, 628
LpnPI	CCDG	8 cut(s)	22, 285, 314, 607, 619, 637, 664, 723
Lsp1109I	GCAGC	3 cut(s)	157, 515, 628
MaeI	CTAG	2 cut(s)	210, 675
MaeIII	GTNAC	4 cut(s)	219, 274, 361, 669
MalI	GATC	2 cut(s)	79, 377
MbiI	CCGCTC	1 cut(s)	520
MboI	GATC	2 cut(s)	77, 375
MboII	GAAGA	6 cut(s)	72, 299, 397, 509, 836, 875
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	1 cut(s)	77
MluCI	AATT	7 cut(s)	110, 156, 174, 471, 586, 607, 727
MlyI	GAGTC	2 cut(s)	345, 406
MnlI	CCTC	5 cut(s)	154, 328, 406, 427, 546
Mph1103I	ATGCAT	1 cut(s)	538
MseI	TTAA	5 cut(s)	21, 339, 510, 759, 855
MspA1I	CMGCKG	2 cut(s)	818, 836
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	2 cut(s)	10, 652
MunI	CAATTG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	652
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	4 cut(s)	197, 206, 697, 842
NciI	CCSGG	1 cut(s)	10
NdeI	CATATG	2 cut(s)	202, 532
NdeII	GATC	2 cut(s)	77, 375
NlaIII	CATG	3 cut(s)	92, 318, 428
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	669
NsiI	ATGCAT	1 cut(s)	538
PagI	TCATGA	1 cut(s)	424
PasI	CCCWGGG	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	181
PflFI	GACNNNGTC	1 cut(s)	118
PflMI	CCANNNNNTGG	1 cut(s)	580
PkrI	GCNGC	4 cut(s)	172, 505, 643, 838
PleI	GAGTC	2 cut(s)	345, 405
PpsI	GAGTC	2 cut(s)	345, 405
Psp6I	CCWGG	1 cut(s)	650
PspGI	CCWGG	1 cut(s)	650
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	2 cut(s)	35, 555
PstI	CTGCAG	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	77
PsyI	GACNNNGTC	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	818
SaqAI	TTAA	5 cut(s)	21, 339, 510, 759, 855
SatI	GCNGC	4 cut(s)	171, 504, 642, 837
Sau3AI	GATC	2 cut(s)	77, 375
Sau96I	GGNCC	2 cut(s)	35, 555
SchI	GAGTC	2 cut(s)	345, 406
ScrFI	CCNGG	2 cut(s)	10, 652
SfcI	CTRYAG	2 cut(s)	562, 843
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	7 cut(s)	110, 156, 174, 471, 586, 607, 727
SsiI	CCGC	5 cut(s)	189, 437, 520, 749, 836
SspI	AATATT	1 cut(s)	145
SspMI	CTAG	2 cut(s)	210, 675
StyD4I	CCNGG	2 cut(s)	8, 650
TaaI	ACNGT	3 cut(s)	59, 69, 563
TaqI	TCGA	1 cut(s)	822
TasI	AATT	7 cut(s)	110, 156, 174, 471, 586, 607, 727
TauI	GCSGC	1 cut(s)	839
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	5 cut(s)	21, 339, 510, 759, 855
Tru9I	TTAA	5 cut(s)	21, 339, 510, 759, 855
TscAI	CASTG	1 cut(s)	554
TseFI	GTSAC	1 cut(s)	669
TseI	GCWGC	3 cut(s)	170, 503, 641
Tsp45I	GTSAC	1 cut(s)	669
TspDTI	ATGAA	7 cut(s)	299, 303, 413, 441, 483, 606, 759
TspGWI	ACGGA	2 cut(s)	185, 388
TspRI	CASTG	1 cut(s)	554
Tth111I	GACNNNGTC	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	580
XapI	RAATTY	2 cut(s)	471, 727
XmiI	GTMKAC	1 cut(s)	122
XspI	CTAG	2 cut(s)	210, 675
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.