Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010956

Physical Location & Seq

Genomic Coordinates Reverse (-)

4801572 .. 4805080

Gene Structure 3509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08170.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGATCTGGAAATTGGTTCAAGGCATTAACCAGCTTAAGGAAAGCAAAATTTGGCAGTTCAAAACGAGTGAAGGGATCCACCATAAACTTTGCAAATGGTACAACAAATAAAAAACTTGGTTCCCTTGACATGCCAGTTGAAGATATAGCTGCAATACGAATTCAGACTGCTTTCCGTGCACATGTGGCTAGGAAAGCTTTACGCCGTTTGAAAGGGATTGTAAGATTGCAAATGCTGACCCAGCAATACCCTGTTAGAAAGCAAGCTACAACTACATTGAGTTATCTGCATTCATGGAGCAGAATACAGACTGATATTAGAACTCGCCGGCTCTGTATGGTAACTGAAGGAAGGATCAAACAGAAGAAAATAGAGAATCAAAATAAACTCGAGGCAAAACTTCATGACATAGAGGTTGAATGGAGTAGTGGCTCTGAGACCATGGATGATATACTTGCAAGGATATATCAGAGGGAAGAAGCAGCAGTTAAGCGTGAGCGCGCTATGGCATATGCGTTTTCTCATCAGTGGAGGGCCAATTGTAGTCAGAGCCAAAGCTTGGGAAGTTATGAACTTGGCAAAGCTAACTGGGGTTGGAGCTGGAAGGAACGCTGGATTGCTGTTCGACCATGGGAAAGCCGTGTCCAGTCAGCTAGCCCAAAGAAAGTGCAGGCTAAGCAAGCTAGCAAAGTTGGCAAGAACATAAATTCACCAACGTCAAACACTTCGGCTATAGTTAAACTCCCTTCACCAAATGGTAAGGGAACTCCAAGAGCTCGGAGATTGTCTTACACATCCAATGAAGAAAAACCAGTTCCACATGCAGAGGGCGTTAAAGCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

283

Amino Acids

31.93

Weight (kDa)

10.51

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33990
fragaria_vesca	FvH4_3g08170 FvH4_3g08170 FvH4_3g08170 FvH4_3g08170
malus_domestica	MD05G1305200.v1.1 MD10G1284500.v1.1
prunus_persica	Prupe.4G057000_v2.0.a1 Prupe.4G057000_v2.0.a1
pyrus_communis	pycom05g28240 pycom10g23760
rosa_chinensis	RchiOBHm_Chr5g0010021
rosa_laevigata	RLG00000031719
rosa_multiflora	Rmu_sc0002275.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066150
rosa_samantha	Rh5AG079400 Rh5BG074200 Rh5CG086800 Rh5DG074900
rosa_wichuraiana	Rw5G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	562
AccII	CGCG	1 cut(s)	504
AclWI	GGATC	4 cut(s)	13, 72, 85, 365
AcsI	RAATTY	3 cut(s)	50, 162, 709
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	2 cut(s)	39, 562
AflII	CTTAAG	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	5 cut(s)	22, 63, 143, 214, 422
Alw21I	GWGCWC	2 cut(s)	184, 781
Alw26I	GTCTC	1 cut(s)	434
Alw44I	GTGCAC	1 cut(s)	180
AlwI	GGATC	4 cut(s)	13, 72, 85, 365
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	1 cut(s)	537
ApaLI	GTGCAC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	152, 485
ApoI	RAATTY	3 cut(s)	50, 162, 709
AspLEI	GCGC	2 cut(s)	504, 506
AspS9I	GGNCC	1 cut(s)	537
AsuHPI	GGTGA	2 cut(s)	705, 744
AsuNHI	GCTAGC	2 cut(s)	656, 686
AvaI	CYCGRG	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	781
Bbv12I	GWGCWC	2 cut(s)	184, 781
BbvI	GCAGC	2 cut(s)	139, 497
BceAI	ACGGC	2 cut(s)	192, 627
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	3 cut(s)	192, 657, 687
BfmI	CTRYAG	1 cut(s)	735
BfrI	CTTAAG	1 cut(s)	37
BisI	GCNGC	2 cut(s)	153, 486
BlpI	GCTNAGC	1 cut(s)	678
BlsI	GCNGC	2 cut(s)	154, 487
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	537
BmiI	GGNNCC	2 cut(s)	79, 124
BmrI	ACTGGG	1 cut(s)	601
BmtI	GCTAGC	2 cut(s)	660, 690
BmuI	ACTGGG	1 cut(s)	601
Bpu1102I	GCTNAGC	1 cut(s)	678
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	444, 632
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 562
Bse118I	RCCGGY	1 cut(s)	330
Bse1I	ACTGG	4 cut(s)	137, 596, 649, 815
BseDI	CCNNGG	2 cut(s)	444, 632
BseGI	GGATG	2 cut(s)	454, 797
BseLI	CCNNNNNNNGG	2 cut(s)	39, 562
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	4 cut(s)	137, 596, 649, 815
BsePI	GCGCGC	1 cut(s)	502
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	139, 497
BseYI	CCCAGC	1 cut(s)	243
BsgI	GTGCAG	1 cut(s)	692
Bsh1236I	CGCG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	539
BsiHKAI	GWGCWC	2 cut(s)	184, 781
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	331
BslI	CCNNNNNNNGG	2 cut(s)	39, 562
BsmAI	GTCTC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	539
Bso31I	GGTCTC	1 cut(s)	434
BsoBI	CYCGRG	1 cut(s)	392
Bsp1286I	GDGCHC	2 cut(s)	184, 781
Bsp143I	GATC	3 cut(s)	5, 77, 357
Bsp1720I	GCTNAGC	1 cut(s)	678
Bsp19I	CCATGG	2 cut(s)	444, 632
BspANI	GGCC	1 cut(s)	539
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	504
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	79, 124
BspOI	GCTAGC	2 cut(s)	660, 690
BspPI	GGATC	4 cut(s)	13, 72, 85, 365
BspTI	CTTAAG	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	434
BsrFI	RCCGGY	1 cut(s)	330
BsrI	ACTGG	4 cut(s)	137, 596, 649, 815
BssAI	RCCGGY	1 cut(s)	330
BssECI	CCNNGG	2 cut(s)	444, 632
BssHII	GCGCGC	1 cut(s)	502
BssMI	GATC	3 cut(s)	5, 77, 357
BssT1I	CCWWGG	2 cut(s)	444, 632
BstAFI	CTTAAG	1 cut(s)	37
BstC8I	GCNNGC	7 cut(s)	267, 332, 504, 658, 675, 684, 688
BstDEI	CTNAG	2 cut(s)	438, 678
BstDSI	CCRYGG	2 cut(s)	444, 632
BstF5I	GGATG	2 cut(s)	454, 797
BstFNI	CGCG	1 cut(s)	504
BstHHI	GCGC	2 cut(s)	504, 506
BstKTI	GATC	3 cut(s)	8, 80, 360
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	3 cut(s)	5, 77, 357
BstMWI	GCNNNNNNNGC	7 cut(s)	179, 188, 197, 244, 679, 683, 696
BstNSI	RCATGY	3 cut(s)	136, 188, 827
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	184
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	2 cut(s)	139, 497
BstX2I	RGATCY	2 cut(s)	5, 77
BstYI	RGATCY	2 cut(s)	5, 77
BsuRI	GGCC	1 cut(s)	539
BtgI	CCRYGG	2 cut(s)	444, 632
BtsCI	GGATG	2 cut(s)	454, 797
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	7 cut(s)	267, 332, 504, 658, 675, 684, 688
CciI	TCATGA	1 cut(s)	406
CfoI	GCGC	2 cut(s)	504, 506
Cfr10I	RCCGGY	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	537
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	7 cut(s)	133, 185, 297, 407, 445, 633, 824
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	2 cut(s)	438, 678
DpnI	GATC	3 cut(s)	7, 79, 359
DpnII	GATC	3 cut(s)	5, 77, 357
Ecl136II	GAGCTC	1 cut(s)	779
Eco130I	CCWWGG	2 cut(s)	444, 632
Eco24I	GRGCYC	1 cut(s)	781
Eco31I	GGTCTC	1 cut(s)	434
Eco53kI	GAGCTC	1 cut(s)	779
Eco57I	CTGAAG	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	779
EcoRI	GAATTC	1 cut(s)	162
EcoT14I	CCWWGG	2 cut(s)	444, 632
EcoT38I	GRGCYC	1 cut(s)	781
ErhI	CCWWGG	2 cut(s)	444, 632
FaeI	CATG	7 cut(s)	136, 188, 300, 410, 448, 636, 827
FatI	CATG	7 cut(s)	132, 184, 296, 406, 444, 632, 823
FauNDI	CATATG	1 cut(s)	514
Fnu4HI	GCNGC	2 cut(s)	153, 486
FokI	GGATG	2 cut(s)	461, 784
FriOI	GRGCYC	1 cut(s)	781
Fsp4HI	GCNGC	2 cut(s)	153, 486
FspBI	CTAG	3 cut(s)	192, 657, 687
GlaI	GCGC	2 cut(s)	503, 505
GluI	GCNGC	2 cut(s)	153, 486
GsaI	CCCAGC	1 cut(s)	247
HaeIII	GGCC	1 cut(s)	539
HapII	CCGG	1 cut(s)	331
HhaI	GCGC	2 cut(s)	504, 506
Hin1II	CATG	7 cut(s)	136, 188, 300, 410, 448, 636, 827
Hin6I	GCGC	2 cut(s)	502, 504
HinP1I	GCGC	2 cut(s)	502, 504
HindIII	AAGCTT	2 cut(s)	198, 559
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	2 cut(s)	705, 744
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	5 cut(s)	168, 439, 474, 552, 783
Hpy188III	TCNNGA	2 cut(s)	9, 407
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	5 cut(s)	67, 344, 348, 601, 759
HpyCH4IV	ACGT	1 cut(s)	719
HpyCH4V	TGCA	8 cut(s)	95, 155, 182, 232, 292, 461, 673, 827
HpyF10VI	GCNNNNNNNGC	7 cut(s)	179, 188, 197, 244, 679, 683, 696
HpyF3I	CTNAG	2 cut(s)	438, 678
HpySE526I	ACGT	1 cut(s)	719
Hsp92II	CATG	7 cut(s)	136, 188, 300, 410, 448, 636, 827
HspAI	GCGC	2 cut(s)	502, 504
KroI	GCCGGC	1 cut(s)	330
KroNI	GCCGGC	1 cut(s)	332
Kzo9I	GATC	3 cut(s)	5, 77, 357
LmnI	GCTCC	2 cut(s)	300, 600
Lsp1109I	GCAGC	2 cut(s)	139, 497
MaeI	CTAG	3 cut(s)	192, 657, 687
MaeII	ACGT	1 cut(s)	719
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	3 cut(s)	7, 79, 359
MboI	GATC	3 cut(s)	5, 77, 357
MboII	GAAGA	4 cut(s)	155, 379, 491, 818
MfeI	CAATTG	1 cut(s)	541
MflI	RGATCY	2 cut(s)	5, 77
MhlI	GDGCHC	2 cut(s)	184, 781
MluCI	AATT	5 cut(s)	13, 50, 162, 541, 709
MmeI	TCCRAC	1 cut(s)	578
MnlI	CCTC	5 cut(s)	388, 409, 468, 528, 823
MroNI	GCCGGC	1 cut(s)	330
MseI	TTAA	5 cut(s)	29, 38, 492, 741, 837
MspCI	CTTAAG	1 cut(s)	37
MspI	CCGG	1 cut(s)	331
MunI	CAATTG	1 cut(s)	541
Mva1269I	GAATGC	1 cut(s)	292
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	7 cut(s)	179, 188, 197, 244, 679, 683, 696
NaeI	GCCGGC	1 cut(s)	332
NcoI	CCATGG	2 cut(s)	444, 632
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	3 cut(s)	5, 77, 357
NgoMIV	GCCGGC	1 cut(s)	330
NheI	GCTAGC	2 cut(s)	656, 686
NlaIII	CATG	7 cut(s)	136, 188, 300, 410, 448, 636, 827
NlaIV	GGNNCC	2 cut(s)	79, 124
NspI	RCATGY	3 cut(s)	136, 188, 827
PaeR7I	CTCGAG	1 cut(s)	392
PagI	TCATGA	1 cut(s)	406
PauI	GCGCGC	1 cut(s)	502
PciI	ACATGT	1 cut(s)	184
PctI	GAATGC	1 cut(s)	292
PdiI	GCCGGC	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	379
PflMI	CCANNNNNTGG	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	154, 487
PscI	ACATGT	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	781
PspFI	CCCAGC	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	79, 124
PspPI	GGNCC	1 cut(s)	537
PspXI	VCTCGAGB	1 cut(s)	392
PsuI	RGATCY	2 cut(s)	5, 77
PteI	GCGCGC	1 cut(s)	502
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
SacI	GAGCTC	1 cut(s)	781
SaqAI	TTAA	5 cut(s)	29, 38, 492, 741, 837
SatI	GCNGC	2 cut(s)	153, 486
Sau3AI	GATC	3 cut(s)	5, 77, 357
Sau96I	GGNCC	1 cut(s)	537
SduI	GDGCHC	2 cut(s)	184, 781
SfcI	CTRYAG	1 cut(s)	735
Sfr274I	CTCGAG	1 cut(s)	392
SlaI	CTCGAG	1 cut(s)	392
SmlI	CTYRAG	2 cut(s)	37, 392
SmoI	CTYRAG	2 cut(s)	37, 392
Sse9I	AATT	5 cut(s)	13, 50, 162, 541, 709
SspMI	CTAG	3 cut(s)	192, 657, 687
SstI	GAGCTC	1 cut(s)	781
StyI	CCWWGG	2 cut(s)	444, 632
TaiI	ACGT	1 cut(s)	722
TaqI	TCGA	2 cut(s)	393, 628
TasI	AATT	5 cut(s)	13, 50, 162, 541, 709
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	5 cut(s)	29, 38, 492, 741, 837
Tru9I	TTAA	5 cut(s)	29, 38, 492, 741, 837
TscAI	CASTG	1 cut(s)	536
TseI	GCWGC	2 cut(s)	152, 485
TspDTI	ATGAA	4 cut(s)	285, 395, 588, 819
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	536
Van91I	CCANNNNNTGG	1 cut(s)	562
Vha464I	CTTAAG	1 cut(s)	37
VneI	GTGCAC	1 cut(s)	180
XapI	RAATTY	3 cut(s)	50, 162, 709
XceI	RCATGY	3 cut(s)	136, 188, 827
XhoI	CTCGAG	1 cut(s)	392
XspI	CTAG	3 cut(s)	192, 657, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.