Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002275.1

Orthogroup ID

OG0010956

Physical Location & Seq

Genomic Coordinates Forward (+)

38933 .. 41105

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002275.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atgggatctggaaattggttcaaggcattaaccagcttaaggaaagcaaagtttggcagttcaaaacgagtgaagggatccaccataaacttgaaaaatctttcagggaaagaatcaaactttgcaaatggtacaaccaataaaaaacttggctcccttgacatgccagttgaagatatagctgcaattcgaattcagactgctttccgtgcacatgtggctaggaaagctttacgtcgtttgaaagggattgtaagattgcaaatgctgacccaagcttaccctgttagaaagcaagctacaactactttgagttatctgcatttatggagcagaatacagactgatattagaactcgccggctctgtatggtaaccgaaggaaggatcaaacagaagaaattagagaatcaaaataaacttgaggcaaaacttcatgacatagaggtggaatggagtggtggctctgaaaccatggatgatatactttcaaggatatatcagagggaagaagcagcagttaagcgtgagcgggctatggcatatgccttttctcatcagtggagggccaattgcagtcagagccaaagcttgggaagttatgaacttggcaaagctaactggggttggagctggaaggaacgctggattgctgctcgaccatgggaaagccgtgtgcagtcacctagcccaaagaaagtgcagactaagcaagctagcaaagttggcaagaacataaattcaccaacaccaaaaacttcggtctcagttaaactcccttcaccaaatggtaagggaactccaagagctcggaaattgtcttacacagccaatgaagaaaagccagttccacatgcagagggcattaaggcagaagaggcaaacaatcagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

298

Amino Acids

33.66

Weight (kDa)

10.42

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33990
fragaria_vesca	FvH4_3g08170 FvH4_3g08170 FvH4_3g08170 FvH4_3g08170
malus_domestica	MD05G1305200.v1.1 MD10G1284500.v1.1
prunus_persica	Prupe.4G057000_v2.0.a1 Prupe.4G057000_v2.0.a1
pyrus_communis	pycom05g28240 pycom10g23760
rosa_chinensis	RchiOBHm_Chr5g0010021
rosa_laevigata	RLG00000031719
rosa_multiflora	Rmu_sc0002275.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066150
rosa_samantha	Rh5AG079400 Rh5BG074200 Rh5CG086800 Rh5DG074900
rosa_wichuraiana	Rw5G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	592
AccBSI	CCGCTC	1 cut(s)	532
AciI	CCGC	1 cut(s)	532
AclWI	GGATC	4 cut(s)	13, 72, 85, 395
AcsI	RAATTY	2 cut(s)	192, 739
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	3 cut(s)	39, 384, 592
AflII	CTTAAG	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	6 cut(s)	22, 63, 94, 173, 244, 492
Alw21I	GWGCWC	2 cut(s)	214, 811
Alw26I	GTCTC	1 cut(s)	769
Alw44I	GTGCAC	1 cut(s)	210
AlwI	GGATC	4 cut(s)	13, 72, 85, 395
AoxI	GGCC	1 cut(s)	567
ApaLI	GTGCAC	1 cut(s)	210
ApeKI	GCWGC	3 cut(s)	182, 515, 653
ApoI	RAATTY	2 cut(s)	192, 739
AspS9I	GGNCC	1 cut(s)	567
AsuHPI	GGTGA	3 cut(s)	675, 735, 774
AsuII	TTCGAA	1 cut(s)	190
AsuNHI	GCTAGC	1 cut(s)	716
BaeGI	GKGCMC	1 cut(s)	214
BamHI	GGATCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	811
Bbv12I	GWGCWC	2 cut(s)	214, 811
BbvI	GCAGC	3 cut(s)	169, 527, 640
BceAI	ACGGC	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	769
BfaI	CTAG	3 cut(s)	222, 687, 717
BfrI	CTTAAG	1 cut(s)	37
BisI	GCNGC	3 cut(s)	183, 516, 654
BlsI	GCNGC	3 cut(s)	184, 517, 655
BmgT120I	GGNCC	1 cut(s)	567
BmiI	GGNNCC	2 cut(s)	79, 154
BmrI	ACTGGG	1 cut(s)	631
BmtI	GCTAGC	1 cut(s)	720
BmuI	ACTGGG	1 cut(s)	631
Bpu14I	TTCGAA	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	769
BsaJI	CCNNGG	2 cut(s)	474, 662
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 384, 592
Bse118I	RCCGGY	1 cut(s)	360
Bse1I	ACTGG	3 cut(s)	167, 626, 845
BseDI	CCNNGG	2 cut(s)	474, 662
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	3 cut(s)	39, 384, 592
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	3 cut(s)	167, 626, 845
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	3 cut(s)	169, 527, 640
BsgI	GTGCAG	2 cut(s)	698, 722
BshFI	GGCC	1 cut(s)	569
BsiHKAI	GWGCWC	2 cut(s)	214, 811
BsiSI	CCGG	1 cut(s)	361
BslI	CCNNNNNNNGG	3 cut(s)	39, 384, 592
BsmAI	GTCTC	1 cut(s)	769
BsnI	GGCC	1 cut(s)	569
Bso31I	GGTCTC	1 cut(s)	769
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	214, 811
Bsp143I	GATC	3 cut(s)	5, 77, 387
Bsp19I	CCATGG	2 cut(s)	474, 662
BspACI	CCGC	1 cut(s)	532
BspANI	GGCC	1 cut(s)	569
BspCNI	CTCAG	1 cut(s)	779
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	79, 154
BspOI	GCTAGC	1 cut(s)	720
BspPI	GGATC	4 cut(s)	13, 72, 85, 395
BspT104I	TTCGAA	1 cut(s)	190
BspTI	CTTAAG	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	769
BsrBI	CCGCTC	1 cut(s)	532
BsrFI	RCCGGY	1 cut(s)	360
BsrI	ACTGG	3 cut(s)	167, 626, 845
BssAI	RCCGGY	1 cut(s)	360
BssECI	CCNNGG	2 cut(s)	474, 662
BssMI	GATC	3 cut(s)	5, 77, 387
BssT1I	CCWWGG	2 cut(s)	474, 662
Bst6I	CTCTTC	1 cut(s)	870
BstAFI	CTTAAG	1 cut(s)	37
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	5 cut(s)	297, 362, 534, 714, 718
BstDEI	CTNAG	2 cut(s)	708, 766
BstDSI	CCRYGG	2 cut(s)	474, 662
BstEII	GGTNACC	1 cut(s)	373
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	3 cut(s)	8, 80, 390
BstMAI	GTCTC	1 cut(s)	769
BstMBI	GATC	3 cut(s)	5, 77, 387
BstMWI	GCNNNNNNNGC	7 cut(s)	209, 218, 227, 582, 709, 726, 878
BstNSI	RCATGY	3 cut(s)	166, 218, 857
BstPI	GGTNACC	1 cut(s)	373
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	3 cut(s)	169, 527, 640
BstX2I	RGATCY	2 cut(s)	5, 77
BstYI	RGATCY	2 cut(s)	5, 77
BsuRI	GGCC	1 cut(s)	569
BtgI	CCRYGG	2 cut(s)	474, 662
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	566
Cac8I	GCNNGC	5 cut(s)	297, 362, 534, 714, 718
CciI	TCATGA	1 cut(s)	436
Cfr10I	RCCGGY	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	567
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	6 cut(s)	163, 215, 437, 475, 663, 854
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	2 cut(s)	708, 766
DpnI	GATC	3 cut(s)	7, 79, 389
DpnII	GATC	3 cut(s)	5, 77, 387
Eam1104I	CTCTTC	1 cut(s)	870
EarI	CTCTTC	1 cut(s)	870
Ecl136II	GAGCTC	1 cut(s)	809
Eco130I	CCWWGG	2 cut(s)	474, 662
Eco24I	GRGCYC	1 cut(s)	811
Eco31I	GGTCTC	1 cut(s)	769
Eco53kI	GAGCTC	1 cut(s)	809
Eco91I	GGTNACC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	809
EcoO65I	GGTNACC	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	192
EcoT14I	CCWWGG	2 cut(s)	474, 662
EcoT38I	GRGCYC	1 cut(s)	811
ErhI	CCWWGG	2 cut(s)	474, 662
FaeI	CATG	6 cut(s)	166, 218, 440, 478, 666, 857
FatI	CATG	6 cut(s)	162, 214, 436, 474, 662, 853
FauI	CCCGC	1 cut(s)	525
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	3 cut(s)	183, 516, 654
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	811
Fsp4HI	GCNGC	3 cut(s)	183, 516, 654
FspBI	CTAG	3 cut(s)	222, 687, 717
GluI	GCNGC	3 cut(s)	183, 516, 654
HaeIII	GGCC	1 cut(s)	569
HapII	CCGG	1 cut(s)	361
Hin1II	CATG	6 cut(s)	166, 218, 440, 478, 666, 857
HindIII	AAGCTT	3 cut(s)	228, 276, 589
HinfI	GANTC	2 cut(s)	113, 409
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	3 cut(s)	675, 735, 774
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	6 cut(s)	198, 469, 504, 582, 813, 891
Hpy188III	TCNNGA	2 cut(s)	9, 437
Hpy8I	GTNNAC	1 cut(s)	212
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	5 cut(s)	67, 374, 378, 631, 789
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	9 cut(s)	125, 185, 212, 262, 322, 576, 679, 703, 857
HpyF10VI	GCNNNNNNNGC	7 cut(s)	209, 218, 227, 582, 709, 726, 878
HpyF3I	CTNAG	2 cut(s)	708, 766
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	6 cut(s)	166, 218, 440, 478, 666, 857
KroI	GCCGGC	1 cut(s)	360
KroNI	GCCGGC	1 cut(s)	362
Kzo9I	GATC	3 cut(s)	5, 77, 387
LmnI	GCTCC	3 cut(s)	158, 330, 630
LpnPI	CCDG	9 cut(s)	46, 90, 180, 297, 374, 607, 619, 631, 858
Lsp1109I	GCAGC	3 cut(s)	169, 527, 640
MaeI	CTAG	3 cut(s)	222, 687, 717
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	2 cut(s)	373, 681
MalI	GATC	3 cut(s)	7, 79, 389
MbiI	CCGCTC	1 cut(s)	532
MboI	GATC	3 cut(s)	5, 77, 387
MboII	GAAGA	5 cut(s)	185, 409, 521, 848, 887
MfeI	CAATTG	1 cut(s)	571
MflI	RGATCY	2 cut(s)	5, 77
MhlI	GDGCHC	2 cut(s)	214, 811
MluCI	AATT	7 cut(s)	13, 186, 192, 401, 571, 739, 815
MmeI	TCCRAC	1 cut(s)	608
MnlI	CCTC	6 cut(s)	418, 439, 498, 558, 853, 871
MroNI	GCCGGC	1 cut(s)	360
MseI	TTAA	5 cut(s)	29, 38, 522, 771, 867
MslI	CAYNNNNRTG	1 cut(s)	446
MspCI	CTTAAG	1 cut(s)	37
MspI	CCGG	1 cut(s)	361
MunI	CAATTG	1 cut(s)	571
MwoI	GCNNNNNNNGC	7 cut(s)	209, 218, 227, 582, 709, 726, 878
NaeI	GCCGGC	1 cut(s)	362
NcoI	CCATGG	2 cut(s)	474, 662
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	3 cut(s)	5, 77, 387
NgoMIV	GCCGGC	1 cut(s)	360
NheI	GCTAGC	1 cut(s)	716
NlaIII	CATG	6 cut(s)	166, 218, 440, 478, 666, 857
NlaIV	GGNNCC	2 cut(s)	79, 154
NmuCI	GTSAC	1 cut(s)	681
NspI	RCATGY	3 cut(s)	166, 218, 857
NspV	TTCGAA	1 cut(s)	190
PagI	TCATGA	1 cut(s)	436
PciI	ACATGT	1 cut(s)	214
PdiI	GCCGGC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	113, 409
PflMI	CCANNNNNTGG	1 cut(s)	592
PkrI	GCNGC	3 cut(s)	184, 517, 655
PscI	ACATGT	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	811
PspEI	GGTNACC	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	79, 154
PspPI	GGNCC	1 cut(s)	567
PsuI	RGATCY	2 cut(s)	5, 77
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	1 cut(s)	811
SaqAI	TTAA	5 cut(s)	29, 38, 522, 771, 867
SatI	GCNGC	3 cut(s)	183, 516, 654
Sau3AI	GATC	3 cut(s)	5, 77, 387
Sau96I	GGNCC	1 cut(s)	567
SduI	GDGCHC	2 cut(s)	214, 811
SfuI	TTCGAA	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	37, 422
SmoI	CTYRAG	2 cut(s)	37, 422
Sse9I	AATT	7 cut(s)	13, 186, 192, 401, 571, 739, 815
SsiI	CCGC	1 cut(s)	532
SspMI	CTAG	3 cut(s)	222, 687, 717
SstI	GAGCTC	1 cut(s)	811
StyI	CCWWGG	2 cut(s)	474, 662
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	2 cut(s)	190, 658
TaqII	GACCGA	1 cut(s)	751
TasI	AATT	7 cut(s)	13, 186, 192, 401, 571, 739, 815
TfiI	GAWTC	2 cut(s)	113, 409
Tru1I	TTAA	5 cut(s)	29, 38, 522, 771, 867
Tru9I	TTAA	5 cut(s)	29, 38, 522, 771, 867
TscAI	CASTG	1 cut(s)	566
TseFI	GTSAC	1 cut(s)	681
TseI	GCWGC	3 cut(s)	182, 515, 653
Tsp45I	GTSAC	1 cut(s)	681
TspDTI	ATGAA	3 cut(s)	425, 618, 849
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	566
Van91I	CCANNNNNTGG	1 cut(s)	592
Vha464I	CTTAAG	1 cut(s)	37
VneI	GTGCAC	1 cut(s)	210
XapI	RAATTY	2 cut(s)	192, 739
XceI	RCATGY	3 cut(s)	166, 218, 857
XspI	CTAG	3 cut(s)	222, 687, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.