Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010956

Physical Location & Seq

Genomic Coordinates Reverse (-)

37449356 .. 37452602

Gene Structure 3247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1284500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCAATCTACATTCCACCACACCCACCTTTTAATCATTCTCTCGTCTCTCTCGTCTCTCCCACCTTTCTCAGGGGTTTTGCTTCTTCCTTACTTCTTCTTTTTACAACAACCGCCTTTTTCCTCCAAAATCTTGAGCACCCATTTCCCAGAAACAAAAAAAGAAAACTGTTTTCTTGGAGATTTCAAGCTGCTTCTCTGGTATTTTCGCTATCAGGTATGGGTTCCGGGCGTTGGTTTAGGGTGTTAATCGGCTTAAAGAAAGCAAAGGACGGCAATTCAAAACAGTTGAAGGGATCATCAGCTCATGGAAAATCAAGTTCCATAAAATTGAAAAAGTCGAGTTTTGCGAATGGTCAAAATCTTGGATTGCCAATTGAGGATATAGCTGCAATTCGGATTCAGACTGCTTTCCGTGCATATGCTGCTAGAAAAGCTTTACGCCGTTTGAAAGGGATTGTAAAATTGCAACTAATGATCCAAGCTTTTCCTATTACTAAGCAAGCTACAACTACATTGAGCTATCTTCATTCATGGAGTAAAATACAAGATGAGGTTAAAGCTCGCCGACTCTGTATGGTAACAGAAGGACGGATCAAGCAGAAGAAAATAGAGAGTCAGCAAAAACTTGAGGCAAAGCTTCATGACATAGAGGCGGATTGGTGTGGTGGCTCTGAAACAATGGATGAAGTTCTTGCAAGGATATATCAAAGAGAAGAAGCAGCAGTTAAGCGTGAGCGGGCTATGGCATATGCATTTTCTCATCAGTGGAGGGCCAACTGCAGTCAGAGCCAAATCTTGGGTAATTATGAGCTCGGTAAAGCTAATTGGGGTTGGAGCTGGAAGGACCGCTGGATTGCTGCTCGCCCCTGGGAAAGCCGTGTGCAGTCACCTAGCCCAAGGAAAGTGCAGAGTAAGCAAGCAAGCCCAGTTGGTAAGAATATAAATTCACCAACGCCAAAAGCTTCGGTTATAGTTAAACTTCCTTCGTCAAATGGTAAGGCAACTACAAAGGCTCAGAGATTGTCTTACTCAGCTGTCGAAGAAAAATCAGTGGCAAGTGCAGAGGGCATTAAAACTGAAGAACAAAACACTCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

368

Amino Acids

41.22

Weight (kDa)

10.34

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33990
fragaria_vesca	FvH4_3g08170 FvH4_3g08170 FvH4_3g08170 FvH4_3g08170
malus_domestica	MD05G1305200.v1.1 MD10G1284500.v1.1
prunus_persica	Prupe.4G057000_v2.0.a1 Prupe.4G057000_v2.0.a1
pyrus_communis	pycom05g28240 pycom10g23760
rosa_chinensis	RchiOBHm_Chr5g0010021
rosa_laevigata	RLG00000031719
rosa_multiflora	Rmu_sc0002275.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066150
rosa_samantha	Rh5AG079400 Rh5BG074200 Rh5CG086800 Rh5DG074900
rosa_wichuraiana	Rw5G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	799
AccBSI	CCGCTC	1 cut(s)	739
AciI	CCGC	4 cut(s)	114, 656, 739, 850
AclWI	GGATC	3 cut(s)	304, 472, 602
AcsI	RAATTY	1 cut(s)	946
AcuI	CTGAAG	1 cut(s)	1101
AfiI	CCNNNNNNNGG	3 cut(s)	72, 234, 799
AgsI	TTSAA	5 cut(s)	188, 282, 292, 334, 451
AjnI	CCWGG	1 cut(s)	869
Alw21I	GWGCWC	2 cut(s)	141, 816
Alw26I	GTCTC	2 cut(s)	52, 61
AlwI	GGATC	3 cut(s)	304, 472, 602
AoxI	GGCC	1 cut(s)	774
ApeKI	GCWGC	5 cut(s)	191, 389, 425, 722, 860
ApoI	RAATTY	1 cut(s)	946
AspS9I	GGNCC	2 cut(s)	774, 847
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	882, 942
AvaII	GGWCC	1 cut(s)	847
BanII	GRGCYC	1 cut(s)	816
Bbv12I	GWGCWC	2 cut(s)	141, 816
BbvI	GCAGC	5 cut(s)	178, 376, 412, 734, 847
BceAI	ACGGC	3 cut(s)	289, 429, 864
BciT130I	CCWGG	1 cut(s)	871
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	52, 61
BfaI	CTAG	2 cut(s)	429, 894
BfmI	CTRYAG	1 cut(s)	781
BisI	GCNGC	5 cut(s)	192, 390, 426, 723, 861
BlsI	GCNGC	5 cut(s)	193, 391, 427, 724, 862
Bme1390I	CCNGG	2 cut(s)	229, 871
Bme18I	GGWCC	1 cut(s)	847
BmgT120I	GGNCC	2 cut(s)	774, 847
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	2 cut(s)	229, 871
BmrI	ACTGGG	1 cut(s)	923
BmuI	ACTGGG	1 cut(s)	923
BpuEI	CTTGAG	2 cut(s)	155, 650
BpuMI	CCSGG	1 cut(s)	229
BsaJI	CCNNGG	3 cut(s)	869, 870, 899
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 234, 799
Bse1I	ACTGG	1 cut(s)	929
BseBI	CCWGG	1 cut(s)	871
BseDI	CCNNGG	3 cut(s)	869, 870, 899
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	3 cut(s)	72, 234, 799
BseMII	CTCAG	3 cut(s)	85, 1031, 1047
BseNI	ACTGG	1 cut(s)	929
BseXI	GCAGC	5 cut(s)	178, 376, 412, 734, 847
BsgI	GTGCAG	3 cut(s)	905, 929, 1083
BshFI	GGCC	1 cut(s)	776
BsiHKAI	GWGCWC	2 cut(s)	141, 816
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	3 cut(s)	72, 234, 799
BsmAI	GTCTC	2 cut(s)	52, 61
BsmBI	CGTCTC	2 cut(s)	52, 61
BsnI	GGCC	1 cut(s)	776
Bsp1286I	GDGCHC	2 cut(s)	141, 816
Bsp143I	GATC	3 cut(s)	296, 477, 594
BspACI	CCGC	4 cut(s)	114, 656, 739, 850
BspANI	GGCC	1 cut(s)	776
BspCNI	CTCAG	3 cut(s)	84, 1030, 1046
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	785
BspPI	GGATC	3 cut(s)	304, 472, 602
BsrBI	CCGCTC	1 cut(s)	739
BsrI	ACTGG	1 cut(s)	929
BssECI	CCNNGG	3 cut(s)	869, 870, 899
BssMI	GATC	3 cut(s)	296, 477, 594
BssT1I	CCWWGG	1 cut(s)	899
Bst2UI	CCWGG	1 cut(s)	871
Bst4CI	ACNGT	2 cut(s)	171, 288
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	6 cut(s)	504, 565, 741, 865, 921, 925
BstDEI	CTNAG	5 cut(s)	71, 498, 1017, 1033, 1095
BstENI	CCTNNNNNAGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	691
BstKTI	GATC	3 cut(s)	299, 480, 597
BstMAI	GTCTC	2 cut(s)	52, 61
BstMBI	GATC	3 cut(s)	296, 477, 594
BstMWI	GCNNNNNNNGC	5 cut(s)	416, 425, 434, 789, 916
BstNI	CCWGG	1 cut(s)	871
BstSCI	CCNGG	2 cut(s)	227, 869
BstSFI	CTRYAG	1 cut(s)	781
BstV1I	GCAGC	5 cut(s)	178, 376, 412, 734, 847
BsuRI	GGCC	1 cut(s)	776
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	2 cut(s)	773, 1059
Cac8I	GCNNGC	6 cut(s)	504, 565, 741, 865, 921, 925
CciI	TCATGA	1 cut(s)	643
Cfr13I	GGNCC	2 cut(s)	774, 847
CviAII	CATG	3 cut(s)	308, 534, 644
DdeI	CTNAG	5 cut(s)	71, 498, 1017, 1033, 1095
DpnI	GATC	3 cut(s)	298, 479, 596
DpnII	GATC	3 cut(s)	296, 477, 594
EciI	GGCGGA	1 cut(s)	671
Ecl136II	GAGCTC	1 cut(s)	814
Eco130I	CCWWGG	1 cut(s)	899
Eco24I	GRGCYC	1 cut(s)	816
Eco47I	GGWCC	1 cut(s)	847
Eco53kI	GAGCTC	1 cut(s)	814
Eco57I	CTGAAG	1 cut(s)	1101
EcoICRI	GAGCTC	1 cut(s)	814
EcoNI	CCTNNNNNAGG	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	869
EcoT14I	CCWWGG	1 cut(s)	899
EcoT22I	ATGCAT	1 cut(s)	757
EcoT38I	GRGCYC	1 cut(s)	816
ErhI	CCWWGG	1 cut(s)	899
Esp3I	CGTCTC	2 cut(s)	52, 61
FaeI	CATG	3 cut(s)	311, 537, 647
FatI	CATG	3 cut(s)	307, 533, 643
FauI	CCCGC	1 cut(s)	732
FauNDI	CATATG	2 cut(s)	421, 751
Fnu4HI	GCNGC	5 cut(s)	192, 390, 426, 723, 861
FokI	GGATG	1 cut(s)	698
FriOI	GRGCYC	1 cut(s)	816
Fsp4HI	GCNGC	5 cut(s)	192, 390, 426, 723, 861
FspBI	CTAG	2 cut(s)	429, 894
GluI	GCNGC	5 cut(s)	192, 390, 426, 723, 861
HaeIII	GGCC	1 cut(s)	776
HapII	CCGG	1 cut(s)	228
Hin1II	CATG	3 cut(s)	311, 537, 647
HindIII	AAGCTT	4 cut(s)	435, 483, 638, 963
HinfI	GANTC	3 cut(s)	400, 570, 616
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	882, 942
Hpy188I	TCNGA	6 cut(s)	399, 405, 676, 789, 1020, 1098
Hpy188III	TCNNGA	2 cut(s)	134, 644
HpyAV	CCTTC	4 cut(s)	286, 581, 838, 996
HpyCH4III	ACNGT	2 cut(s)	171, 288
HpyCH4V	TGCA	9 cut(s)	392, 419, 469, 698, 755, 783, 886, 910, 1064
HpyF10VI	GCNNNNNNNGC	5 cut(s)	416, 425, 434, 789, 916
HpyF3I	CTNAG	5 cut(s)	71, 498, 1017, 1033, 1095
Hsp92II	CATG	3 cut(s)	311, 537, 647
Kzo9I	GATC	3 cut(s)	296, 477, 594
LmnI	GCTCC	1 cut(s)	837
Lsp1109I	GCAGC	5 cut(s)	178, 376, 412, 734, 847
MaeI	CTAG	2 cut(s)	429, 894
MaeIII	GTNAC	2 cut(s)	580, 888
MalI	GATC	3 cut(s)	298, 479, 596
MbiI	CCGCTC	1 cut(s)	739
MboI	GATC	3 cut(s)	296, 477, 594
MboII	GAAGA	7 cut(s)	78, 89, 518, 616, 728, 1055, 1094
MfeI	CAATTG	1 cut(s)	375
MhlI	GDGCHC	2 cut(s)	141, 816
MluCI	AATT	8 cut(s)	277, 329, 375, 393, 464, 805, 826, 946
MlyI	GAGTC	2 cut(s)	564, 625
MmeI	TCCRAC	1 cut(s)	815
MnlI	CCTC	7 cut(s)	134, 373, 547, 625, 646, 765, 1060
Mph1103I	ATGCAT	1 cut(s)	757
MseI	TTAA	7 cut(s)	33, 248, 257, 558, 729, 978, 1074
MspA1I	CMGCKG	2 cut(s)	852, 1037
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	229, 871
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	871
MwoI	GCNNNNNNNGC	5 cut(s)	416, 425, 434, 789, 916
NciI	CCSGG	1 cut(s)	229
NdeI	CATATG	2 cut(s)	421, 751
NdeII	GATC	3 cut(s)	296, 477, 594
NlaIII	CATG	3 cut(s)	311, 537, 647
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	888
NsiI	ATGCAT	1 cut(s)	757
PagI	TCATGA	1 cut(s)	643
PasI	CCCWGGG	1 cut(s)	870
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 347
PfeI	GAWTC	1 cut(s)	400
PflMI	CCANNNNNTGG	1 cut(s)	799
PkrI	GCNGC	5 cut(s)	193, 391, 427, 724, 862
PleI	GAGTC	2 cut(s)	564, 624
PpsI	GAGTC	2 cut(s)	564, 624
Psp124BI	GAGCTC	1 cut(s)	816
Psp6I	CCWGG	1 cut(s)	869
PspGI	CCWGG	1 cut(s)	869
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	774, 847
PstI	CTGCAG	1 cut(s)	785
PvuII	CAGCTG	1 cut(s)	1037
SacI	GAGCTC	1 cut(s)	816
SaqAI	TTAA	7 cut(s)	33, 248, 257, 558, 729, 978, 1074
SatI	GCNGC	5 cut(s)	192, 390, 426, 723, 861
Sau3AI	GATC	3 cut(s)	296, 477, 594
Sau96I	GGNCC	2 cut(s)	774, 847
SchI	GAGTC	2 cut(s)	564, 625
ScrFI	CCNGG	2 cut(s)	229, 871
SduI	GDGCHC	2 cut(s)	141, 816
SfcI	CTRYAG	1 cut(s)	781
SinI	GGWCC	1 cut(s)	847
SmlI	CTYRAG	2 cut(s)	134, 629
SmoI	CTYRAG	2 cut(s)	134, 629
Sse9I	AATT	8 cut(s)	277, 329, 375, 393, 464, 805, 826, 946
SsiI	CCGC	4 cut(s)	114, 656, 739, 850
SspMI	CTAG	2 cut(s)	429, 894
SstI	GAGCTC	1 cut(s)	816
StyD4I	CCNGG	2 cut(s)	227, 869
StyI	CCWWGG	1 cut(s)	899
TaaI	ACNGT	2 cut(s)	171, 288
TaqI	TCGA	2 cut(s)	341, 1041
TasI	AATT	8 cut(s)	277, 329, 375, 393, 464, 805, 826, 946
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	7 cut(s)	33, 248, 257, 558, 729, 978, 1074
Tru9I	TTAA	7 cut(s)	33, 248, 257, 558, 729, 978, 1074
TscAI	CASTG	2 cut(s)	773, 1059
TseFI	GTSAC	1 cut(s)	888
TseI	GCWGC	5 cut(s)	191, 389, 425, 722, 860
Tsp45I	GTSAC	1 cut(s)	888
TspDTI	ATGAA	4 cut(s)	518, 522, 632, 702
TspGWI	ACGGA	2 cut(s)	404, 607
TspRI	CASTG	2 cut(s)	773, 1059
Van91I	CCANNNNNTGG	1 cut(s)	799
VpaK11BI	GGWCC	1 cut(s)	847
XagI	CCTNNNNNAGG	1 cut(s)	70
XapI	RAATTY	1 cut(s)	946
XspI	CTAG	2 cut(s)	429, 894
Zsp2I	ATGCAT	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.