Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010956

Physical Location & Seq

Genomic Coordinates Forward (+)

6251076 .. 6254343

Gene Structure 3268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG074200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGATCTGGAAATTGGTTCAAGGCATTAACCAGCTTAAGGAAAGCAAAGTTTGGCAGTTCAAAACGAGTGAAGGGATCCACCATAAACTTGAAAAATCTTTCAGGGAAAGAATCAAACTTTGCAAATGGGACAACCAATAAAAAACTTGGCTCCCTTGACATGCCAGTTGAAGATATAGCTGCAATTCGAATTCAGACTGCTTTCCGTGCACATGTGGCTAGGAAAGCTTTACGTCGTTTGAAAGGGATTGTAAGATTGCAAATGCTGACCCAAGCTTACCCTGTTAGAAAGCAAGCTACAACTACGTTGAGTTATCTGCATTTATGGAGCAGAATACAGACTGATATTAGAACTCGCCGGCTCTGTATGGTAACCGAAGGAAGGATCAAACAGAAGAAATTAGAGAATCAAAATAAACTTGAGGCAAAACTTCATGACATAGAGGTGGAATGGAGTGGTGGCTCTGAAACCATGGATGATATACTTTCAAGGATATATCAGAGGGAAGAAGCAGCAGTTAAGCGTGAGCGGGCTATGGCATATGCCTTTTCTCATCAGGTACACCCTATTCTTTGGAGGGCCAATTGCAGTCAGAGCCAAAGCTTGGGAAGTTATGAACTTGGCAAAGCTAACTGGGGTTGGAGCTGGAAGGAACGCTGGATTGCGGCTCGACCATGGGAAAGCCGTGTGCAGTCACCTAGCCCAAAGAAAGTGCAGACTAAGCAAGCTAGCAAAGTTGGCAAGAACATAAATTCACCAACGCCAAAAACTTCGGTCTCAGTTAAACTCCCTTCACCAAATGGTAAGGGAACTCCAAGAGCTCGGAAATTGTCTTACACAGCCAATGAAGAAAAGCCAGTTCCACATGCAGAGGGCATTAAGGCAGAAGAGGCAAACAATCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

303

Amino Acids

34.22

Weight (kDa)

10.42

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33990
fragaria_vesca	FvH4_3g08170 FvH4_3g08170 FvH4_3g08170 FvH4_3g08170
malus_domestica	MD05G1305200.v1.1 MD10G1284500.v1.1
prunus_persica	Prupe.4G057000_v2.0.a1 Prupe.4G057000_v2.0.a1
pyrus_communis	pycom05g28240 pycom10g23760
rosa_chinensis	RchiOBHm_Chr5g0010021
rosa_laevigata	RLG00000031719
rosa_multiflora	Rmu_sc0002275.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066150
rosa_samantha	Rh5AG079400 Rh5BG074200 Rh5CG086800 Rh5DG074900
rosa_wichuraiana	Rw5G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccBSI	CCGCTC	1 cut(s)	532
AciI	CCGC	2 cut(s)	532, 668
AclWI	GGATC	4 cut(s)	13, 72, 85, 395
AcsI	RAATTY	2 cut(s)	192, 754
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	3 cut(s)	39, 384, 607
AflII	CTTAAG	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	6 cut(s)	22, 63, 94, 173, 244, 492
Alw21I	GWGCWC	2 cut(s)	214, 826
Alw26I	GTCTC	1 cut(s)	784
Alw44I	GTGCAC	1 cut(s)	210
AlwI	GGATC	4 cut(s)	13, 72, 85, 395
AoxI	GGCC	1 cut(s)	582
ApaLI	GTGCAC	1 cut(s)	210
ApeKI	GCWGC	2 cut(s)	182, 515
ApoI	RAATTY	2 cut(s)	192, 754
AspS9I	GGNCC	1 cut(s)	582
AsuHPI	GGTGA	3 cut(s)	690, 750, 789
AsuII	TTCGAA	1 cut(s)	190
AsuNHI	GCTAGC	1 cut(s)	731
BaeGI	GKGCMC	1 cut(s)	214
BamHI	GGATCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	826
Bbv12I	GWGCWC	2 cut(s)	214, 826
BbvI	GCAGC	2 cut(s)	169, 527
BceAI	ACGGC	1 cut(s)	672
BcoDI	GTCTC	1 cut(s)	784
BfaI	CTAG	3 cut(s)	222, 702, 732
BfrI	CTTAAG	1 cut(s)	37
BisI	GCNGC	3 cut(s)	183, 516, 669
BlsI	GCNGC	3 cut(s)	184, 517, 670
BmgT120I	GGNCC	1 cut(s)	582
BmiI	GGNNCC	2 cut(s)	79, 154
BmrI	ACTGGG	1 cut(s)	646
BmtI	GCTAGC	1 cut(s)	735
BmuI	ACTGGG	1 cut(s)	646
Bpu14I	TTCGAA	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	784
BsaJI	CCNNGG	2 cut(s)	474, 677
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 384, 607
Bse118I	RCCGGY	1 cut(s)	360
Bse1I	ACTGG	3 cut(s)	167, 641, 860
BseDI	CCNNGG	2 cut(s)	474, 677
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	3 cut(s)	39, 384, 607
BseMII	CTCAG	1 cut(s)	795
BseNI	ACTGG	3 cut(s)	167, 641, 860
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	2 cut(s)	169, 527
BsgI	GTGCAG	2 cut(s)	713, 737
BshFI	GGCC	1 cut(s)	584
BsiHKAI	GWGCWC	2 cut(s)	214, 826
BsiSI	CCGG	1 cut(s)	361
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	3 cut(s)	39, 384, 607
BsmAI	GTCTC	1 cut(s)	784
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	584
Bso31I	GGTCTC	1 cut(s)	784
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	214, 826
Bsp143I	GATC	3 cut(s)	5, 77, 387
Bsp19I	CCATGG	2 cut(s)	474, 677
BspACI	CCGC	2 cut(s)	532, 668
BspANI	GGCC	1 cut(s)	584
BspCNI	CTCAG	1 cut(s)	794
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	79, 154
BspOI	GCTAGC	1 cut(s)	735
BspPI	GGATC	4 cut(s)	13, 72, 85, 395
BspT104I	TTCGAA	1 cut(s)	190
BspTI	CTTAAG	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	784
BsrBI	CCGCTC	1 cut(s)	532
BsrFI	RCCGGY	1 cut(s)	360
BsrI	ACTGG	3 cut(s)	167, 641, 860
BssAI	RCCGGY	1 cut(s)	360
BssECI	CCNNGG	2 cut(s)	474, 677
BssMI	GATC	3 cut(s)	5, 77, 387
BssT1I	CCWWGG	2 cut(s)	474, 677
Bst6I	CTCTTC	1 cut(s)	885
BstAFI	CTTAAG	1 cut(s)	37
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	5 cut(s)	297, 362, 534, 729, 733
BstDEI	CTNAG	2 cut(s)	723, 781
BstDSI	CCRYGG	2 cut(s)	474, 677
BstEII	GGTNACC	1 cut(s)	373
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	3 cut(s)	8, 80, 390
BstMAI	GTCTC	1 cut(s)	784
BstMBI	GATC	3 cut(s)	5, 77, 387
BstMWI	GCNNNNNNNGC	7 cut(s)	209, 218, 227, 597, 724, 741, 893
BstNSI	RCATGY	3 cut(s)	166, 218, 872
BstPI	GGTNACC	1 cut(s)	373
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	169, 527
BstX2I	RGATCY	2 cut(s)	5, 77
BstYI	RGATCY	2 cut(s)	5, 77
BsuRI	GGCC	1 cut(s)	584
BtgI	CCRYGG	2 cut(s)	474, 677
BtsCI	GGATG	1 cut(s)	484
Cac8I	GCNNGC	5 cut(s)	297, 362, 534, 729, 733
CciI	TCATGA	1 cut(s)	436
Cfr10I	RCCGGY	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	582
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	6 cut(s)	163, 215, 437, 475, 678, 869
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	2 cut(s)	723, 781
DpnI	GATC	3 cut(s)	7, 79, 389
DpnII	GATC	3 cut(s)	5, 77, 387
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
Ecl136II	GAGCTC	1 cut(s)	824
Eco130I	CCWWGG	2 cut(s)	474, 677
Eco24I	GRGCYC	1 cut(s)	826
Eco31I	GGTCTC	1 cut(s)	784
Eco53kI	GAGCTC	1 cut(s)	824
Eco91I	GGTNACC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	824
EcoO65I	GGTNACC	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	192
EcoT14I	CCWWGG	2 cut(s)	474, 677
EcoT38I	GRGCYC	1 cut(s)	826
ErhI	CCWWGG	2 cut(s)	474, 677
FaeI	CATG	6 cut(s)	166, 218, 440, 478, 681, 872
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	6 cut(s)	162, 214, 436, 474, 677, 868
FauI	CCCGC	1 cut(s)	525
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	3 cut(s)	183, 516, 669
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	826
Fsp4HI	GCNGC	3 cut(s)	183, 516, 669
FspBI	CTAG	3 cut(s)	222, 702, 732
GluI	GCNGC	3 cut(s)	183, 516, 669
HaeIII	GGCC	1 cut(s)	584
HapII	CCGG	1 cut(s)	361
Hin1II	CATG	6 cut(s)	166, 218, 440, 478, 681, 872
HindIII	AAGCTT	3 cut(s)	228, 276, 604
HinfI	GANTC	2 cut(s)	113, 409
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	3 cut(s)	690, 750, 789
Hpy166II	GTNNAC	2 cut(s)	212, 565
Hpy188I	TCNGA	6 cut(s)	198, 469, 504, 597, 828, 906
Hpy188III	TCNNGA	2 cut(s)	9, 437
Hpy8I	GTNNAC	2 cut(s)	212, 565
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	5 cut(s)	67, 374, 378, 646, 804
HpyCH4IV	ACGT	2 cut(s)	235, 308
HpyCH4V	TGCA	9 cut(s)	125, 185, 212, 262, 322, 591, 694, 718, 872
HpyF10VI	GCNNNNNNNGC	7 cut(s)	209, 218, 227, 597, 724, 741, 893
HpyF3I	CTNAG	2 cut(s)	723, 781
HpySE526I	ACGT	2 cut(s)	235, 308
Hsp92II	CATG	6 cut(s)	166, 218, 440, 478, 681, 872
KroI	GCCGGC	1 cut(s)	360
KroNI	GCCGGC	1 cut(s)	362
Kzo9I	GATC	3 cut(s)	5, 77, 387
LmnI	GCTCC	3 cut(s)	158, 330, 645
Lsp1109I	GCAGC	2 cut(s)	169, 527
MaeI	CTAG	3 cut(s)	222, 702, 732
MaeII	ACGT	2 cut(s)	235, 308
MaeIII	GTNAC	2 cut(s)	373, 696
MalI	GATC	3 cut(s)	7, 79, 389
MbiI	CCGCTC	1 cut(s)	532
MboI	GATC	3 cut(s)	5, 77, 387
MboII	GAAGA	5 cut(s)	185, 409, 521, 863, 902
MfeI	CAATTG	1 cut(s)	586
MflI	RGATCY	2 cut(s)	5, 77
MhlI	GDGCHC	2 cut(s)	214, 826
MluCI	AATT	7 cut(s)	13, 186, 192, 401, 586, 754, 830
MmeI	TCCRAC	1 cut(s)	623
MnlI	CCTC	6 cut(s)	418, 439, 498, 573, 868, 886
MroNI	GCCGGC	1 cut(s)	360
MseI	TTAA	5 cut(s)	29, 38, 522, 786, 882
MslI	CAYNNNNRTG	1 cut(s)	446
MspCI	CTTAAG	1 cut(s)	37
MspI	CCGG	1 cut(s)	361
MunI	CAATTG	1 cut(s)	586
MwoI	GCNNNNNNNGC	7 cut(s)	209, 218, 227, 597, 724, 741, 893
NaeI	GCCGGC	1 cut(s)	362
NcoI	CCATGG	2 cut(s)	474, 677
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	3 cut(s)	5, 77, 387
NgoMIV	GCCGGC	1 cut(s)	360
NheI	GCTAGC	1 cut(s)	731
NlaIII	CATG	6 cut(s)	166, 218, 440, 478, 681, 872
NlaIV	GGNNCC	2 cut(s)	79, 154
NmuCI	GTSAC	1 cut(s)	696
NspI	RCATGY	3 cut(s)	166, 218, 872
NspV	TTCGAA	1 cut(s)	190
PagI	TCATGA	1 cut(s)	436
PciI	ACATGT	1 cut(s)	214
PdiI	GCCGGC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	113, 409
PflMI	CCANNNNNTGG	1 cut(s)	607
PkrI	GCNGC	3 cut(s)	184, 517, 670
PscI	ACATGT	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	826
PspEI	GGTNACC	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	79, 154
PspPI	GGNCC	1 cut(s)	582
PsuI	RGATCY	2 cut(s)	5, 77
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	1 cut(s)	826
SaqAI	TTAA	5 cut(s)	29, 38, 522, 786, 882
SatI	GCNGC	3 cut(s)	183, 516, 669
Sau3AI	GATC	3 cut(s)	5, 77, 387
Sau96I	GGNCC	1 cut(s)	582
SduI	GDGCHC	2 cut(s)	214, 826
SfuI	TTCGAA	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	37, 422
SmoI	CTYRAG	2 cut(s)	37, 422
Sse9I	AATT	7 cut(s)	13, 186, 192, 401, 586, 754, 830
SsiI	CCGC	2 cut(s)	532, 668
SspMI	CTAG	3 cut(s)	222, 702, 732
SstI	GAGCTC	1 cut(s)	826
StyI	CCWWGG	2 cut(s)	474, 677
TaiI	ACGT	2 cut(s)	238, 311
TaqI	TCGA	2 cut(s)	190, 673
TaqII	GACCGA	1 cut(s)	766
TasI	AATT	7 cut(s)	13, 186, 192, 401, 586, 754, 830
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	2 cut(s)	113, 409
Tru1I	TTAA	5 cut(s)	29, 38, 522, 786, 882
Tru9I	TTAA	5 cut(s)	29, 38, 522, 786, 882
TseFI	GTSAC	1 cut(s)	696
TseI	GCWGC	2 cut(s)	182, 515
Tsp45I	GTSAC	1 cut(s)	696
TspDTI	ATGAA	3 cut(s)	425, 633, 864
TspGWI	ACGGA	1 cut(s)	197
Van91I	CCANNNNNTGG	1 cut(s)	607
Vha464I	CTTAAG	1 cut(s)	37
VneI	GTGCAC	1 cut(s)	210
XapI	RAATTY	2 cut(s)	192, 754
XceI	RCATGY	3 cut(s)	166, 218, 872
XspI	CTAG	3 cut(s)	222, 702, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.