AT2G34060

peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014526
Physical Location & Seq
Forward (+)
14384797 .. 14386725
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34060.1

Sequence Viewer

Length: 1041 bp
ATGCATGTCATATCTCTTTCGTTATCCTCAATATTCTTTTTCCTCTTCCTCACATCAACCATTTTGATTTCTCCGGTACAACCCACAACCTCTAAGCCTCCGGCACCACGGCCCCACAGAGAGCTCTCCGCCGATTACTACTCCAAGAAATGTCCTCAGCTTGAAACTCTCGTCGGTTCCGTCACTTCTCAGCGGTTCAAAGAAGTCCCCATCTCAGCTCCAGCCACCATTCGCCTCTTCTTTCACGACTGCTTCGTTGAGGGTTGTGATGGGTCGATATTGATAGAAACAAAGAAAGGAAGCAAGAAATTAGCAGAGAGAGAAGCATATGAGAATAAGGAATTGAGAGAGGAAGGATTTGATAGTATCATCAAGGCGAAGGCCTTGGTTGAGTCTCATTGCCCTTCTCTCGTCTCTTGCTCTGATATTCTCGCTATTGCCGCTCGAGATTTCATTCATCTGGCAGGTGGGCCTTACTATCAAGTGAAAAAAGGAAGGTGGGACGGAAAAAGATCAACGGCAAAGAACGTCCCTCCAAACATACCTCGATCAAACTCCACCGTTGATCAACTCATCAAGCTCTTCGCGTCCAAAGGACTAACCGTAGAGGAACTCGTCGTCCTTTCTGGTTCCCACACCATCGGCTTCGCCCATTGTAAAAATTTCCTTGGTCGTCTCTACGACTACAAAGGCACAAAACGACCCGACCCGAGTCTTGACCAAAGATTACTAAAAGAGCTCCGGATGTCTTGTCCTTTTTCCGGCGGAAGCTCTGGAGTCGTCCTTCCGCTCGACGCTACAACTCCGTTTGTGTTTGATAATGGATATTTCACAGGTCTAGGAACCAACATGGGCCTTCTCGGGTCGGACCAAGCTTTGTTCCTTGACCCGAGGACGAAGCCCATTGCACTTGAGATGGCAAGAGATAAGCAGAAGTTTCTCAAGGCGTTTGGAGACGCTATGGATAAAATGGGTTCCATTGGTGTAAAGAGAGGGAAGAGACATGGGGAAATACGTACGGATTGTCGAGTCTTTTTATAG

Protein Analysis

346

Amino Acids

38.23

Weight (kDa)

9.28

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 60 - 309 8.7e-77 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34060
fragaria_vesca FvH4_2g10460 FvH4_2g10460
malus_domestica MD05G1306500.v1.1
prunus_persica Prupe.4G056100_v2.0.a1
pyrus_communis pycom05g28360
rosa_chinensis RchiOBHm_Chr5g0009831
rosa_laevigata RLG00000031704
rosa_multiflora Rmu_sc0021291.1_g000001
rosa_roxburghii Rroxscaffold_1G00066360
rosa_rugosa Rorug04G0446300 Rorug04G0446300
rosa_samantha Rh5AG077700 Rh5BG072800 Rh5CG085200 Rh5DG073300
rosa_wichuraiana Rw5G007160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 455
Acc36I ACCTGC 1 cut(s) 455
AccB1I GGYRCC 1 cut(s) 103
AccBSI CCGCTC 2 cut(s) 443, 790
AccII CGCG 1 cut(s) 587
AccIII TCCGGA 1 cut(s) 741
AciI CCGC 5 cut(s) 129, 193, 441, 765, 788
AcsI RAATTY 1 cut(s) 661
AfaI GTAC 2 cut(s) 78, 1018
AfiI CCNNNNNNNGG 1 cut(s) 761
AgsI TTSAA 2 cut(s) 164, 199
AloI GAACNNNNNNTCC 2 cut(s) 603, 635
AluBI AGCT 7 cut(s) 124, 160, 218, 580, 739, 771, 875
AluI AGCT 7 cut(s) 124, 160, 218, 580, 739, 771, 875
Alw21I GWGCWC 2 cut(s) 126, 741
Alw26I GTCTC 5 cut(s) 399, 418, 680, 948, 994
Ama87I CYCGRG 4 cut(s) 444, 709, 860, 889
Aor13HI TCCGGA 1 cut(s) 741
AoxI GGCC 4 cut(s) 110, 381, 470, 853
ApoI RAATTY 1 cut(s) 661
AspS9I GGNCC 4 cut(s) 111, 470, 853, 868
AvaI CYCGRG 4 cut(s) 444, 709, 860, 889
AvaII GGWCC 1 cut(s) 868
BanI GGYRCC 1 cut(s) 103
BanII GRGCYC 2 cut(s) 126, 741
Bbv12I GWGCWC 2 cut(s) 126, 741
BbvCI CCTCAGC 1 cut(s) 156
BccI CCATC 4 cut(s) 218, 263, 647, 910
BceAI ACGGC 2 cut(s) 125, 534
BclI TGATCA 1 cut(s) 565
BcoDI GTCTC 5 cut(s) 399, 418, 680, 948, 994
BfaI CTAG 1 cut(s) 839
BfuAI ACCTGC 1 cut(s) 455
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme18I GGWCC 1 cut(s) 868
BmeT110I CYCGRG 4 cut(s) 444, 709, 860, 889
BmgT120I GGNCC 4 cut(s) 111, 470, 853, 868
BmiI GGNNCC 6 cut(s) 105, 113, 178, 631, 844, 976
BoxI GACNNNNGTC 1 cut(s) 711
BpmI CTGGAG 2 cut(s) 204, 795
Bpu10I CCTNAGC 1 cut(s) 156
BpuEI CTTGAG 2 cut(s) 926, 932
BsaAI YACGTR 1 cut(s) 1016
BsaJI CCNNGG 4 cut(s) 107, 384, 667, 890
BsaWI WCCGGW 2 cut(s) 73, 741
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse3DI GCAATG 2 cut(s) 397, 903
BseAI TCCGGA 1 cut(s) 741
BseDI CCNNGG 4 cut(s) 107, 384, 667, 890
BseGI GGATG 1 cut(s) 750
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMI GCAATG 2 cut(s) 397, 903
BseMII CTCAG 3 cut(s) 170, 203, 228
Bsh1236I CGCG 1 cut(s) 587
BshFI GGCC 4 cut(s) 112, 383, 472, 855
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 2 cut(s) 126, 741
BsiHKCI CYCGRG 4 cut(s) 444, 709, 860, 889
BsiSI CCGG 4 cut(s) 74, 101, 742, 762
BsiWI CGTACG 1 cut(s) 1016
BslFI GGGAC 3 cut(s) 191, 515, 515
BslI CCNNNNNNNGG 1 cut(s) 761
BsmAI GTCTC 5 cut(s) 399, 418, 680, 948, 994
BsmBI CGTCTC 3 cut(s) 418, 680, 948
BsmFI GGGAC 3 cut(s) 191, 515, 515
BsnI GGCC 4 cut(s) 112, 383, 472, 855
BsoBI CYCGRG 4 cut(s) 444, 709, 860, 889
Bsp1286I GDGCHC 2 cut(s) 126, 741
Bsp13I TCCGGA 1 cut(s) 741
Bsp143I GATC 3 cut(s) 512, 548, 565
BspACI CCGC 5 cut(s) 129, 193, 441, 765, 788
BspANI GGCC 4 cut(s) 112, 383, 472, 855
BspCNI CTCAG 3 cut(s) 169, 202, 227
BspEI TCCGGA 1 cut(s) 741
BspFNI CGCG 1 cut(s) 587
BspLI GGNNCC 6 cut(s) 105, 113, 178, 631, 844, 976
BspMI ACCTGC 1 cut(s) 455
BspQI GCTCTTC 1 cut(s) 587
BspT107I GGYRCC 1 cut(s) 103
BsrBI CCGCTC 2 cut(s) 443, 790
BsrDI GCAATG 2 cut(s) 397, 903
BssECI CCNNGG 4 cut(s) 107, 384, 667, 890
BssMI GATC 3 cut(s) 512, 548, 565
BssT1I CCWWGG 2 cut(s) 384, 667
Bst4CI ACNGT 2 cut(s) 562, 604
Bst6I CTCTTC 4 cut(s) 50, 242, 587, 992
BstBAI YACGTR 1 cut(s) 1016
BstDEI CTNAG 4 cut(s) 93, 156, 189, 214
BstDSI CCRYGG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 750
BstFNI CGCG 1 cut(s) 587
BstKTI GATC 3 cut(s) 515, 551, 568
BstMAI GTCTC 5 cut(s) 399, 418, 680, 948, 994
BstMBI GATC 3 cut(s) 512, 548, 565
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 8
BstPAI GACNNNNGTC 1 cut(s) 711
BstSNI TACGTA 1 cut(s) 1016
BstUI CGCG 1 cut(s) 587
BsuRI GGCC 4 cut(s) 112, 383, 472, 855
BtgI CCRYGG 1 cut(s) 107
BtsCI GGATG 1 cut(s) 750
BveI ACCTGC 1 cut(s) 455
Cfr13I GGNCC 4 cut(s) 111, 470, 853, 868
CseI GACGC 3 cut(s) 576, 803, 965
Csp6I GTAC 2 cut(s) 77, 1017
CviAII CATG 3 cut(s) 5, 850, 1004
CviQI GTAC 2 cut(s) 77, 1017
DdeI CTNAG 4 cut(s) 93, 156, 189, 214
DpnI GATC 3 cut(s) 514, 550, 567
DpnII GATC 3 cut(s) 512, 548, 565
Eam1104I CTCTTC 4 cut(s) 50, 242, 587, 992
EarI CTCTTC 4 cut(s) 50, 242, 587, 992
EciI GGCGGA 2 cut(s) 118, 780
Ecl136II GAGCTC 2 cut(s) 124, 739
Eco105I TACGTA 1 cut(s) 1016
Eco130I CCWWGG 2 cut(s) 384, 667
Eco147I AGGCCT 1 cut(s) 383
Eco24I GRGCYC 2 cut(s) 126, 741
Eco47I GGWCC 1 cut(s) 868
Eco53kI GAGCTC 2 cut(s) 124, 739
Eco88I CYCGRG 4 cut(s) 444, 709, 860, 889
EcoICRI GAGCTC 2 cut(s) 124, 739
EcoT14I CCWWGG 2 cut(s) 384, 667
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 126, 741
ErhI CCWWGG 2 cut(s) 384, 667
Esp3I CGTCTC 3 cut(s) 418, 680, 948
FaeI CATG 3 cut(s) 8, 853, 1007
FaiI YATR 9 cut(s) 6, 11, 328, 330, 542, 851, 962, 1005, 1039
FaqI GGGAC 3 cut(s) 191, 515, 515
FatI CATG 3 cut(s) 4, 849, 1003
FauNDI CATATG 1 cut(s) 328
FbaI TGATCA 1 cut(s) 565
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 1 cut(s) 757
FriOI GRGCYC 2 cut(s) 126, 741
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 1 cut(s) 839
GluI GCNGC 1 cut(s) 441
GsuI CTGGAG 2 cut(s) 204, 795
HaeIII GGCC 4 cut(s) 112, 383, 472, 855
HapII CCGG 4 cut(s) 74, 101, 742, 762
HgaI GACGC 3 cut(s) 576, 803, 965
Hin1II CATG 3 cut(s) 8, 853, 1007
HindIII AAGCTT 1 cut(s) 873
HinfI GANTC 4 cut(s) 392, 712, 777, 1029
HpaII CCGG 4 cut(s) 74, 101, 742, 762
Hpy188I TCNGA 2 cut(s) 424, 868
Hpy188III TCNNGA 5 cut(s) 245, 446, 716, 742, 774
Hpy99I CGWCG 3 cut(s) 176, 620, 797
HpyAV CCTTC 6 cut(s) 347, 373, 414, 489, 794, 866
HpyCH4III ACNGT 2 cut(s) 562, 604
HpyCH4IV ACGT 2 cut(s) 528, 1015
HpyCH4V TGCA 2 cut(s) 4, 908
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 4 cut(s) 93, 156, 189, 214
HpySE526I ACGT 2 cut(s) 528, 1015
Hsp92II CATG 3 cut(s) 8, 853, 1007
Kpn2I TCCGGA 1 cut(s) 741
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 3 cut(s) 512, 548, 565
LguI GCTCTTC 1 cut(s) 587
LmnI GCTCC 2 cut(s) 223, 744
MaeI CTAG 1 cut(s) 839
MaeII ACGT 2 cut(s) 528, 1015
MaeIII GTNAC 1 cut(s) 181
MalI GATC 3 cut(s) 514, 550, 567
MbiI CCGCTC 2 cut(s) 443, 790
MboI GATC 3 cut(s) 512, 548, 565
MboII GAAGA 4 cut(s) 37, 229, 574, 1009
MhlI GDGCHC 2 cut(s) 126, 741
MluCI AATT 3 cut(s) 308, 341, 661
MlyI GAGTC 4 cut(s) 401, 721, 786, 1038
MmeI TCCRAC 1 cut(s) 846
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 741
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 4 cut(s) 74, 101, 742, 762
MvnI CGCG 1 cut(s) 587
MwoI GCNNNNNNNGC 1 cut(s) 440
NdeI CATATG 1 cut(s) 328
NdeII GATC 3 cut(s) 512, 548, 565
NlaIII CATG 3 cut(s) 8, 853, 1007
NlaIV GGNNCC 6 cut(s) 105, 113, 178, 631, 844, 976
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeR7I CTCGAG 1 cut(s) 444
PaqCI CACCTGC 1 cut(s) 455
PceI AGGCCT 1 cut(s) 383
PciSI GCTCTTC 1 cut(s) 587
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 252
Pfl23II CGTACG 1 cut(s) 1016
PkrI GCNGC 1 cut(s) 442
PleI GAGTC 4 cut(s) 400, 720, 785, 1037
PpsI GAGTC 4 cut(s) 400, 720, 785, 1037
Ppu21I YACGTR 1 cut(s) 1016
PshAI GACNNNNGTC 1 cut(s) 711
Psp124BI GAGCTC 2 cut(s) 126, 741
PspLI CGTACG 1 cut(s) 1016
PspN4I GGNNCC 6 cut(s) 105, 113, 178, 631, 844, 976
PspPI GGNCC 4 cut(s) 111, 470, 853, 868
RsaI GTAC 2 cut(s) 78, 1018
RsaNI GTAC 2 cut(s) 77, 1017
SacI GAGCTC 2 cut(s) 126, 741
SapI GCTCTTC 1 cut(s) 587
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 3 cut(s) 512, 548, 565
Sau96I GGNCC 4 cut(s) 111, 470, 853, 868
SchI GAGTC 4 cut(s) 401, 721, 786, 1038
SduI GDGCHC 2 cut(s) 126, 741
Sfr274I CTCGAG 1 cut(s) 444
SinI GGWCC 1 cut(s) 868
SlaI CTCGAG 1 cut(s) 444
SmlI CTYRAG 3 cut(s) 444, 911, 941
SmoI CTYRAG 3 cut(s) 444, 911, 941
SnaBI TACGTA 1 cut(s) 1016
Sse9I AATT 3 cut(s) 308, 341, 661
SseBI AGGCCT 1 cut(s) 383
SsiI CCGC 5 cut(s) 129, 193, 441, 765, 788
SspI AATATT 1 cut(s) 33
SspMI CTAG 1 cut(s) 839
SstI GAGCTC 2 cut(s) 126, 741
StuI AGGCCT 1 cut(s) 383
StyI CCWWGG 2 cut(s) 384, 667
TaaI ACNGT 2 cut(s) 562, 604
TaiI ACGT 2 cut(s) 531, 1018
TaqI TCGA 5 cut(s) 275, 445, 547, 792, 1027
TasI AATT 3 cut(s) 308, 341, 661
TauI GCSGC 1 cut(s) 443
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 442, 446
TspGWI ACGGA 4 cut(s) 169, 519, 795, 1034
VpaK11BI GGWCC 1 cut(s) 868
XapI RAATTY 1 cut(s) 661
XceI RCATGY 1 cut(s) 8
XhoI CTCGAG 1 cut(s) 444
XspI CTAG 1 cut(s) 839
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.