Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021291.1

Orthogroup ID

OG0014526

Physical Location & Seq

Genomic Coordinates Reverse (-)

2239 .. 7626

Gene Structure 5388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021291.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

atgcaagctcgggtcgacccgcctctccaatccatctgggtctacaccgcattgacatttcggagccggaaccacccgaaaggcgacatcttggaccgaattgcagccgcaaaggacttgtttcagctattcttctcttgctcagctccctgcggttgctcaaaaagcatcgcgctgctcgttccggtggtgcggttggcacacgacgttgttttggatttgtttaagagggaattggggttgaagaaagagaagaaagtgacgaaggaggggaagaatttggtgggagtgattatggctgggacttcaggggaggtgttgaagatagagttgaggacttgggctgttgacgggagcgcctgccttgacgagaatcgtaatctggggcgttggagggagatgacgaagtctttgggaacttctgcaagttttgcagcaaaacctcatcgccaactctcagttgattactatgcgaaatcatgtccccaactcgaaaaactcatcgggtccatcacatcccaacagttcaaagaagcaccagtttctggtccagcaaccattcgccttttcttccatgactgctttgtagaaggctgtgatgcgtccataaccataaagtcacagcaggggagcaaggtgttggcagagaaggatgcaccagataataaggacctgagggaggaaggctttgaaagtgtgaggaaagcaaaggctttggtagaaagcaagtgtcctggtgttgtgtcttgtgctgacattcttgcaattgaagccagagattatgtccacttggcagggggtccatactatcaagttacgaaaggaaggtgggatggaagaatatcaatggcctcaagagtggcttccaatattccccaagcaaatttcacagtgaatcagctactcaaactcttcaattcaaaaggactaacacttgaagaccttgttgttctttctggtgctcatacattcgggtatgcacattgccagaacttcgtaagcaggctctatgactacagaggctcgaagcagcctgacccggttatggacccgaggctccagagggcgctaagaatgtcatgcccacattatggtgggaatcctgacattgttgcaccatttgatgtcactactccctttgtgtttgatcatgcctattatggtaatttagtggctaagttgggcttgctagcttcagaccaagctttagctttggacccaagaaccaaacccattgttcaagcacttgcaaaagataaagcgaagtttttccaagcttttggggtggctatggagaaaatgggctcaataggtgtgaagaggggaagaaaacatggggagagaagaaaagactgtagtatgcatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

456

Amino Acids

50.36

Weight (kDa)

9.3

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34060
fragaria_vesca	FvH4_2g10460 FvH4_2g10460
malus_domestica	MD05G1306500.v1.1
prunus_persica	Prupe.4G056100_v2.0.a1
pyrus_communis	pycom05g28360
rosa_chinensis	RchiOBHm_Chr5g0009831
rosa_laevigata	RLG00000031704
rosa_multiflora	Rmu_sc0021291.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066360
rosa_rugosa	Rorug04G0446300 Rorug04G0446300
rosa_samantha	Rh5AG077700 Rh5BG072800 Rh5CG085200 Rh5DG073300
rosa_wichuraiana	Rw5G007160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	545, 1091
AccI	GTMKAC	2 cut(s)	15, 42
AccII	CGCG	1 cut(s)	173
AciI	CCGC	5 cut(s)	20, 48, 108, 153, 193
AcsI	RAATTY	2 cut(s)	277, 883
AcuI	CTGAAG	2 cut(s)	291, 1179
AfiI	CCNNNNNNNGG	4 cut(s)	545, 679, 1045, 1091
AgsI	TTSAA	9 cut(s)	244, 322, 529, 692, 770, 916, 921, 938, 1241
AjnI	CCWGG	1 cut(s)	733
AluBI	AGCT	8 cut(s)	8, 127, 146, 901, 1193, 1205, 1211, 1277
AluI	AGCT	8 cut(s)	8, 127, 146, 901, 1193, 1205, 1211, 1277
Alw21I	GWGCWC	1 cut(s)	964
AlwNI	CAGNNNCTG	1 cut(s)	545
Ama87I	CYCGRG	2 cut(s)	9, 1051
AoxI	GGCC	1 cut(s)	849
ApeKI	GCWGC	4 cut(s)	104, 175, 434, 1030
ApoI	RAATTY	2 cut(s)	277, 883
ArsI	GACNNNNNNTTYG	2 cut(s)	394, 426
Asp700I	GAANNNNTTC	1 cut(s)	1268
AspLEI	GCGC	3 cut(s)	175, 359, 1069
AspS9I	GGNCC	7 cut(s)	94, 507, 548, 670, 800, 1048, 1216
AsuC2I	CCSGG	1 cut(s)	1040
AsuNHI	GCTAGC	1 cut(s)	1189
AvaI	CYCGRG	2 cut(s)	9, 1051
AvaII	GGWCC	7 cut(s)	94, 507, 548, 670, 800, 1048, 1216
AxyI	CCTNAGG	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	1307
BbsI	GAAGAC	1 cut(s)	945
Bbv12I	GWGCWC	1 cut(s)	964
BbvI	GCAGC	4 cut(s)	116, 162, 446, 1042
BccI	CCATC	3 cut(s)	41, 518, 827
BciT130I	CCWGG	1 cut(s)	735
BclI	TGATCA	1 cut(s)	1147
BcnI	CCSGG	1 cut(s)	1040
BfaI	CTAG	1 cut(s)	1190
BfmI	CTRYAG	2 cut(s)	1015, 1354
BfoI	RGCGCY	2 cut(s)	360, 1070
BisI	GCNGC	5 cut(s)	105, 108, 176, 435, 1031
BlpI	GCTNAGC	1 cut(s)	142
BlsI	GCNGC	5 cut(s)	106, 109, 177, 436, 1032
Bme1390I	CCNGG	2 cut(s)	735, 1040
Bme18I	GGWCC	7 cut(s)	94, 507, 548, 670, 800, 1048, 1216
BmeT110I	CYCGRG	2 cut(s)	9, 1051
BmgT120I	GGNCC	7 cut(s)	94, 507, 548, 670, 800, 1048, 1216
BmiI	GGNNCC	7 cut(s)	65, 71, 508, 801, 1050, 1058, 1218
BmrFI	CCNGG	2 cut(s)	735, 1040
BmsI	GCATC	3 cut(s)	177, 589, 643
BmtI	GCTAGC	1 cut(s)	1193
BpiI	GAAGAC	1 cut(s)	945
BpmI	CTGGAG	1 cut(s)	1043
Bpu1102I	GCTNAGC	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	838
BpuMI	CCSGG	1 cut(s)	1040
BsaJI	CCNNGG	1 cut(s)	1052
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	4 cut(s)	545, 679, 1045, 1091
Bse1I	ACTGG	1 cut(s)	539
Bse21I	CCTNAGG	1 cut(s)	674
Bse3DI	GCAATG	1 cut(s)	982
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	1 cut(s)	1052
BseGI	GGATG	3 cut(s)	515, 658, 838
BseLI	CCNNNNNNNGG	4 cut(s)	545, 679, 1045, 1091
BseMI	GCAATG	1 cut(s)	982
BseMII	CTCAG	3 cut(s)	156, 471, 665
BseNI	ACTGG	1 cut(s)	539
BseXI	GCAGC	4 cut(s)	116, 162, 446, 1042
BseYI	CCCAGC	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	851
BsiHKAI	GWGCWC	1 cut(s)	964
BsiHKCI	CYCGRG	2 cut(s)	9, 1051
BsiSI	CCGG	3 cut(s)	67, 185, 1040
BslFI	GGGAC	2 cut(s)	316, 468
BslI	CCNNNNNNNGG	4 cut(s)	545, 679, 1045, 1091
BsmFI	GGGAC	2 cut(s)	316, 468
BsnI	GGCC	1 cut(s)	851
BsoBI	CYCGRG	2 cut(s)	9, 1051
Bsp1286I	GDGCHC	2 cut(s)	964, 1307
Bsp143I	GATC	1 cut(s)	1147
Bsp1720I	GCTNAGC	1 cut(s)	142
BspACI	CCGC	5 cut(s)	20, 48, 108, 153, 193
BspANI	GGCC	1 cut(s)	851
BspCNI	CTCAG	3 cut(s)	155, 470, 666
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	7 cut(s)	65, 71, 508, 801, 1050, 1058, 1218
BspOI	GCTAGC	1 cut(s)	1193
BsrDI	GCAATG	1 cut(s)	982
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	1 cut(s)	1052
BssMI	GATC	1 cut(s)	1147
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	3 cut(s)	525, 892, 1355
Bst6I	CTCTTC	2 cut(s)	917, 1313
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	5 cut(s)	6, 361, 1004, 1187, 1191
BstDEI	CTNAG	5 cut(s)	142, 457, 674, 1070, 1176
BstENI	CCTNNNNNAGG	1 cut(s)	677
BstF5I	GGATG	3 cut(s)	515, 658, 838
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	2 cut(s)	360, 1070
BstHHI	GCGC	3 cut(s)	175, 359, 1069
BstKTI	GATC	1 cut(s)	1150
BstMBI	GATC	1 cut(s)	1147
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 431, 770
BstNI	CCWGG	1 cut(s)	735
BstSCI	CCNGG	2 cut(s)	733, 1038
BstSFI	CTRYAG	2 cut(s)	1015, 1354
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	4 cut(s)	116, 162, 446, 1042
BstV2I	GAAGAC	1 cut(s)	945
BstXI	CCANNNNNNTGG	1 cut(s)	1280
Bsu36I	CCTNAGG	1 cut(s)	674
BsuRI	GGCC	1 cut(s)	851
BtgZI	GCGATG	2 cut(s)	154, 431
BtsCI	GGATG	3 cut(s)	515, 658, 838
BtsIMutI	CAGTG	1 cut(s)	897
Cac8I	GCNNGC	5 cut(s)	6, 361, 1004, 1187, 1191
CaiI	CAGNNNCTG	1 cut(s)	545
CfoI	GCGC	3 cut(s)	175, 359, 1069
Cfr13I	GGNCC	7 cut(s)	94, 507, 548, 670, 800, 1048, 1216
CseI	GACGC	1 cut(s)	591
CviAII	CATG	5 cut(s)	480, 575, 1080, 1151, 1334
DdeI	CTNAG	5 cut(s)	142, 457, 674, 1070, 1176
DpnI	GATC	1 cut(s)	1149
DpnII	GATC	1 cut(s)	1147
Eam1104I	CTCTTC	2 cut(s)	917, 1313
EarI	CTCTTC	2 cut(s)	917, 1313
Eco24I	GRGCYC	1 cut(s)	1307
Eco47I	GGWCC	7 cut(s)	94, 507, 548, 670, 800, 1048, 1216
Eco57I	CTGAAG	2 cut(s)	291, 1179
Eco81I	CCTNAGG	1 cut(s)	674
Eco88I	CYCGRG	2 cut(s)	9, 1051
EcoNI	CCTNNNNNAGG	1 cut(s)	677
EcoO109I	RGGNCCY	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	733
EcoT22I	ATGCAT	1 cut(s)	1365
EcoT38I	GRGCYC	1 cut(s)	1307
FaeI	CATG	5 cut(s)	483, 578, 1083, 1154, 1337
FalI	AAGNNNNNCTT	4 cut(s)	847, 879, 1169, 1201
FaqI	GGGAC	2 cut(s)	316, 468
FatI	CATG	5 cut(s)	479, 574, 1079, 1150, 1333
FauI	CCCGC	1 cut(s)	27
FauNDI	CATATG	1 cut(s)	1365
FbaI	TGATCA	1 cut(s)	1147
FblI	GTMKAC	2 cut(s)	15, 42
Fnu4HI	GCNGC	5 cut(s)	105, 108, 176, 435, 1031
FokI	GGATG	3 cut(s)	502, 665, 845
FriOI	GRGCYC	1 cut(s)	1307
Fsp4HI	GCNGC	5 cut(s)	105, 108, 176, 435, 1031
FspBI	CTAG	1 cut(s)	1190
GlaI	GCGC	3 cut(s)	174, 358, 1068
GluI	GCNGC	5 cut(s)	105, 108, 176, 435, 1031
GsaI	CCCAGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	1043
HaeII	RGCGCY	2 cut(s)	360, 1070
HaeIII	GGCC	1 cut(s)	851
HapII	CCGG	3 cut(s)	67, 185, 1040
HgaI	GACGC	1 cut(s)	591
HhaI	GCGC	3 cut(s)	175, 359, 1069
Hin1II	CATG	5 cut(s)	483, 578, 1083, 1154, 1337
Hin6I	GCGC	3 cut(s)	173, 357, 1067
HinP1I	GCGC	3 cut(s)	173, 357, 1067
HincII	GTYRAC	2 cut(s)	16, 349
HindII	GTYRAC	2 cut(s)	16, 349
HindIII	AAGCTT	2 cut(s)	1203, 1275
HinfI	GANTC	3 cut(s)	373, 895, 1099
HpaII	CCGG	3 cut(s)	67, 185, 1040
Hpy166II	GTNNAC	4 cut(s)	16, 43, 349, 787
Hpy188I	TCNGA	2 cut(s)	63, 1198
Hpy188III	TCNNGA	3 cut(s)	855, 1060, 1103
Hpy8I	GTNNAC	4 cut(s)	16, 43, 349, 787
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	5 cut(s)	259, 584, 643, 677, 819
HpyCH4III	ACNGT	3 cut(s)	525, 892, 1355
HpyCH4IV	ACGT	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 431, 770
HpyF3I	CTNAG	5 cut(s)	142, 457, 674, 1070, 1176
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	5 cut(s)	483, 578, 1083, 1154, 1337
HspAI	GCGC	3 cut(s)	173, 357, 1067
Ksp22I	TGATCA	1 cut(s)	1147
Kzo9I	GATC	1 cut(s)	1147
LmnI	GCTCC	5 cut(s)	63, 151, 354, 630, 1062
Lsp1109I	GCAGC	4 cut(s)	116, 162, 446, 1042
LweI	GCATC	3 cut(s)	177, 589, 643
MaeI	CTAG	1 cut(s)	1190
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	4 cut(s)	259, 618, 814, 1126
MalI	GATC	1 cut(s)	1149
MboI	GATC	1 cut(s)	1147
MfeI	CAATTG	1 cut(s)	765
MhlI	GDGCHC	2 cut(s)	964, 1307
MluCI	AATT	7 cut(s)	99, 233, 277, 765, 883, 916, 1165
MmeI	TCCRAC	1 cut(s)	371
Mph1103I	ATGCAT	1 cut(s)	1365
MroXI	GAANNNNTTC	1 cut(s)	1268
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	1092
MspI	CCGG	3 cut(s)	67, 185, 1040
MspR9I	CCNGG	2 cut(s)	735, 1040
MunI	CAATTG	1 cut(s)	765
MvaI	CCWGG	1 cut(s)	735
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	165, 431, 770
NciI	CCSGG	1 cut(s)	1040
NdeI	CATATG	1 cut(s)	1365
NdeII	GATC	1 cut(s)	1147
NheI	GCTAGC	1 cut(s)	1189
NlaIII	CATG	5 cut(s)	483, 578, 1083, 1154, 1337
NlaIV	GGNNCC	7 cut(s)	65, 71, 508, 801, 1050, 1058, 1218
NmuCI	GTSAC	3 cut(s)	259, 618, 1126
NsiI	ATGCAT	1 cut(s)	1365
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	1268
PfeI	GAWTC	3 cut(s)	373, 895, 1099
PflFI	GACNNNGTC	1 cut(s)	406
PflMI	CCANNNNNTGG	2 cut(s)	545, 1091
PkrI	GCNGC	5 cut(s)	106, 109, 177, 436, 1032
PpuMI	RGGWCCY	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	670
Psp6I	CCWGG	1 cut(s)	733
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	7 cut(s)	65, 71, 508, 801, 1050, 1058, 1218
PspPI	GGNCC	7 cut(s)	94, 507, 548, 670, 800, 1048, 1216
PspPPI	RGGWCCY	1 cut(s)	670
PstNI	CAGNNNCTG	1 cut(s)	545
PsyI	GACNNNGTC	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	1092
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	5 cut(s)	105, 108, 176, 435, 1031
Sau3AI	GATC	1 cut(s)	1147
Sau96I	GGNCC	7 cut(s)	94, 507, 548, 670, 800, 1048, 1216
ScrFI	CCNGG	2 cut(s)	735, 1040
SduI	GDGCHC	2 cut(s)	964, 1307
SfaNI	GCATC	3 cut(s)	177, 589, 643
SfcI	CTRYAG	2 cut(s)	1015, 1354
SinI	GGWCC	7 cut(s)	94, 507, 548, 670, 800, 1048, 1216
SmiMI	CAYNNNNRTG	1 cut(s)	1092
SmlI	CTYRAG	1 cut(s)	853
SmoI	CTYRAG	1 cut(s)	853
Sse9I	AATT	7 cut(s)	99, 233, 277, 765, 883, 916, 1165
SsiI	CCGC	5 cut(s)	20, 48, 108, 153, 193
SspI	AATATT	1 cut(s)	871
SspMI	CTAG	1 cut(s)	1190
StyD4I	CCNGG	2 cut(s)	733, 1038
TaaI	ACNGT	3 cut(s)	525, 892, 1355
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	3 cut(s)	15, 492, 1025
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	7 cut(s)	99, 233, 277, 765, 883, 916, 1165
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	3 cut(s)	373, 895, 1099
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	897
TseFI	GTSAC	3 cut(s)	259, 618, 1126
TseI	GCWGC	4 cut(s)	104, 175, 434, 1030
Tsp45I	GTSAC	3 cut(s)	259, 618, 1126
TspRI	CASTG	1 cut(s)	897
Tth111I	GACNNNGTC	1 cut(s)	406
Van91I	CCANNNNNTGG	2 cut(s)	545, 1091
VpaK11BI	GGWCC	7 cut(s)	94, 507, 548, 670, 800, 1048, 1216
XagI	CCTNNNNNAGG	1 cut(s)	677
XapI	RAATTY	2 cut(s)	277, 883
XmiI	GTMKAC	2 cut(s)	15, 42
XmnI	GAANNNNTTC	1 cut(s)	1268
XspI	CTAG	1 cut(s)	1190
Zsp2I	ATGCAT	1 cut(s)	1365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.