RLG00000031704

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014526
Physical Location & Seq
Reverse (-)
7594408 .. 7596118
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031704

Sequence Viewer

Length: 1029 bp
ATGTCTTCTTCTTGTTCTTCTCCTTCTTCTTGGTTTACATTGACATCTTGTTTGACCATTTTCTTCCTGCTTAGAACTTCTGCAAGTTTTGCAGCAAAACCTCACCGCCAACTCTCAGTTGATTACTATGCGAAATCATGTCCCCAACTCGAAAAACTCATCGGGTCCATCACATCCCAACAGTTCAAAGAAGCACCAGTTTCTGGTCCAGCAACCATTCGCCTTTTCTTCCATGACTGCTTTGTAGAAGGCTGTGATGCGTCCATAACCATAAAGTCACAGCAGGGGAGCAAGGTATTGGCAGAGAAGGATGCACCAGATAATAAGGACCTGAGGGAGGAAGGCTTTGAAAGCGTGAGGAAAGCAAAGGCTTTGGTAGAAAGCAAGTGTCCTGGTGTTGTGTCTTGTGCTGACATTCTTGCAATTGAAGCCAGAGATTATGTCCACTTGGCAGGGGGTCCATACTATCAAGTTAAGAAAGGAAGGTGGGATGGAAGAATATCAATGGCCTCAAGAGTGGCTTCCAATATTCCCCAAGCAAATTTCACAGTGAATCAGCTACTCAAACTCTTCAATTCAAAAGGACTAACACTTGAAGACCTTGTTGTTCTTTCTGGTGCTCATACATTCGGGTATGCACATTGCCAGAACTTCGTAAGCAGGCTCTATGACTACAGAGGCTCGAAGCAGCCTGACCCGGTTATGGACCCGAGGCTCCAGAGGGCGCTAAGAATGTCATGCCCACATTATGGTGGGAATCCTGACATTGTTGCACCATTTGATGTCACTACTCCCTTTGTGTTTGATCATGCCTATTATGGTAATTTAGTGGCTAAGTTGGGCTTGCTAGCTTCAGACCAAGCTTTAGCTTTGGACCCAAGAACCAAACCCATTGTTCAAGCACTTGCAAAAGATAAAGCGAAGTTTTTCCAAGCTTTTGGGGTGGCTATGGAGAAAATGGGCTCAATAGGTGTGAAGAGGGGAAGAAAACATGGGGAGAGGAGAAAAGACTGTAGTATGCATATGTGA

Protein Analysis

343

Amino Acids

37.74

Weight (kDa)

9.2

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 59 - 305 9e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34060
fragaria_vesca FvH4_2g10460 FvH4_2g10460
malus_domestica MD05G1306500.v1.1
prunus_persica Prupe.4G056100_v2.0.a1
pyrus_communis pycom05g28360
rosa_chinensis RchiOBHm_Chr5g0009831
rosa_laevigata RLG00000031704
rosa_multiflora Rmu_sc0021291.1_g000001
rosa_roxburghii Rroxscaffold_1G00066360
rosa_rugosa Rorug04G0446300 Rorug04G0446300
rosa_samantha Rh5AG077700 Rh5BG072800 Rh5CG085200 Rh5DG073300
rosa_wichuraiana Rw5G007160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 203, 749
AciI CCGC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 541
AcuI CTGAAG 1 cut(s) 837
AfiI CCNNNNNNNGG 4 cut(s) 203, 337, 703, 749
AgsI TTSAA 7 cut(s) 187, 350, 428, 574, 579, 596, 899
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 5 cut(s) 559, 851, 863, 869, 935
AluI AGCT 5 cut(s) 559, 851, 863, 869, 935
Alw21I GWGCWC 1 cut(s) 622
AlwNI CAGNNNCTG 1 cut(s) 203
Ama87I CYCGRG 1 cut(s) 709
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 2 cut(s) 92, 688
ApoI RAATTY 1 cut(s) 541
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
Asp700I GAANNNNTTC 1 cut(s) 926
AspLEI GCGC 1 cut(s) 727
AspS9I GGNCC 6 cut(s) 165, 206, 328, 458, 706, 874
AsuC2I CCSGG 1 cut(s) 698
AsuHPI GGTGA 1 cut(s) 95
AsuNHI GCTAGC 1 cut(s) 847
AvaI CYCGRG 1 cut(s) 709
AvaII GGWCC 6 cut(s) 165, 206, 328, 458, 706, 874
AxyI CCTNAGG 1 cut(s) 332
BanII GRGCYC 1 cut(s) 965
BbsI GAAGAC 1 cut(s) 603
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 2 cut(s) 104, 700
BccI CCATC 2 cut(s) 176, 485
BciT130I CCWGG 1 cut(s) 393
BclI TGATCA 1 cut(s) 805
BcnI CCSGG 1 cut(s) 698
BfaI CTAG 1 cut(s) 848
BfmI CTRYAG 2 cut(s) 673, 1012
BfoI RGCGCY 1 cut(s) 728
BisI GCNGC 2 cut(s) 93, 689
BlsI GCNGC 2 cut(s) 94, 690
Bme1390I CCNGG 2 cut(s) 393, 698
Bme18I GGWCC 6 cut(s) 165, 206, 328, 458, 706, 874
BmeT110I CYCGRG 1 cut(s) 709
BmgT120I GGNCC 6 cut(s) 165, 206, 328, 458, 706, 874
BmiI GGNNCC 5 cut(s) 166, 459, 708, 716, 876
BmrFI CCNGG 2 cut(s) 393, 698
BmsI GCATC 2 cut(s) 247, 301
BmtI GCTAGC 1 cut(s) 851
BpiI GAAGAC 1 cut(s) 603
BpmI CTGGAG 1 cut(s) 701
BpuEI CTTGAG 1 cut(s) 496
BpuMI CCSGG 1 cut(s) 698
BsaJI CCNNGG 1 cut(s) 710
Bsc4I CCNNNNNNNGG 4 cut(s) 203, 337, 703, 749
Bse1I ACTGG 1 cut(s) 197
Bse21I CCTNAGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 640
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 710
BseGI GGATG 3 cut(s) 173, 316, 496
BseLI CCNNNNNNNGG 4 cut(s) 203, 337, 703, 749
BseMI GCAATG 1 cut(s) 640
BseMII CTCAG 2 cut(s) 129, 323
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 1015
BseXI GCAGC 2 cut(s) 104, 700
BshFI GGCC 1 cut(s) 509
BsiHKAI GWGCWC 1 cut(s) 622
BsiHKCI CYCGRG 1 cut(s) 709
BsiSI CCGG 1 cut(s) 698
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 4 cut(s) 203, 337, 703, 749
BsmFI GGGAC 1 cut(s) 126
BsnI GGCC 1 cut(s) 509
BsoBI CYCGRG 1 cut(s) 709
Bsp1286I GDGCHC 2 cut(s) 622, 965
Bsp143I GATC 1 cut(s) 805
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 2 cut(s) 128, 324
BspLI GGNNCC 5 cut(s) 166, 459, 708, 716, 876
BspOI GCTAGC 1 cut(s) 851
BsrDI GCAATG 1 cut(s) 640
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 710
BssMI GATC 1 cut(s) 805
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 3 cut(s) 183, 550, 1013
Bst6I CTCTTC 2 cut(s) 575, 971
BstAPI GCANNNNNTGC 1 cut(s) 89
BstC8I GCNNGC 3 cut(s) 662, 845, 849
BstDEI CTNAG 5 cut(s) 71, 115, 332, 728, 834
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 3 cut(s) 173, 316, 496
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 1 cut(s) 808
BstMBI GATC 1 cut(s) 805
BstMWI GCNNNNNNNGC 3 cut(s) 89, 351, 428
BstNI CCWGG 1 cut(s) 393
BstSCI CCNGG 2 cut(s) 391, 696
BstSFI CTRYAG 2 cut(s) 673, 1012
BstV1I GCAGC 2 cut(s) 104, 700
BstV2I GAAGAC 1 cut(s) 603
BstXI CCANNNNNNTGG 1 cut(s) 938
Bsu36I CCTNAGG 1 cut(s) 332
BsuRI GGCC 1 cut(s) 509
BtsCI GGATG 3 cut(s) 173, 316, 496
BtsIMutI CAGTG 1 cut(s) 555
Cac8I GCNNGC 3 cut(s) 662, 845, 849
CaiI CAGNNNCTG 1 cut(s) 203
CfoI GCGC 1 cut(s) 727
Cfr13I GGNCC 6 cut(s) 165, 206, 328, 458, 706, 874
CseI GACGC 1 cut(s) 249
CviAII CATG 5 cut(s) 138, 233, 738, 809, 992
DdeI CTNAG 5 cut(s) 71, 115, 332, 728, 834
DpnI GATC 1 cut(s) 807
DpnII GATC 1 cut(s) 805
Eam1104I CTCTTC 2 cut(s) 575, 971
EarI CTCTTC 2 cut(s) 575, 971
Eco24I GRGCYC 1 cut(s) 965
Eco47I GGWCC 6 cut(s) 165, 206, 328, 458, 706, 874
Eco57I CTGAAG 1 cut(s) 837
Eco81I CCTNAGG 1 cut(s) 332
Eco88I CYCGRG 1 cut(s) 709
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 391
EcoT22I ATGCAT 1 cut(s) 1023
EcoT38I GRGCYC 1 cut(s) 965
FaeI CATG 5 cut(s) 141, 236, 741, 812, 995
FalI AAGNNNNNCTT 4 cut(s) 505, 537, 827, 859
FaqI GGGAC 1 cut(s) 126
FatI CATG 5 cut(s) 137, 232, 737, 808, 991
FauNDI CATATG 1 cut(s) 1023
FbaI TGATCA 1 cut(s) 805
Fnu4HI GCNGC 2 cut(s) 93, 689
FokI GGATG 3 cut(s) 160, 323, 503
FriOI GRGCYC 1 cut(s) 965
Fsp4HI GCNGC 2 cut(s) 93, 689
FspBI CTAG 1 cut(s) 848
GlaI GCGC 1 cut(s) 726
GluI GCNGC 2 cut(s) 93, 689
GsuI CTGGAG 1 cut(s) 701
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 1 cut(s) 509
HapII CCGG 1 cut(s) 698
HgaI GACGC 1 cut(s) 249
HhaI GCGC 1 cut(s) 727
Hin1II CATG 5 cut(s) 141, 236, 741, 812, 995
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HindIII AAGCTT 2 cut(s) 861, 933
HinfI GANTC 2 cut(s) 553, 757
HpaII CCGG 1 cut(s) 698
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 36, 445
Hpy188I TCNGA 1 cut(s) 856
Hpy188III TCNNGA 3 cut(s) 513, 718, 761
Hpy8I GTNNAC 2 cut(s) 36, 445
HpyAV CCTTC 5 cut(s) 33, 242, 301, 335, 477
HpyCH4III ACNGT 3 cut(s) 183, 550, 1013
HpyCH4V TGCA 8 cut(s) 83, 92, 314, 422, 638, 773, 908, 1021
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 351, 428
HpyF3I CTNAG 5 cut(s) 71, 115, 332, 728, 834
Hsp92II CATG 5 cut(s) 141, 236, 741, 812, 995
HspAI GCGC 1 cut(s) 725
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 1 cut(s) 805
LmnI GCTCC 2 cut(s) 288, 720
Lsp1109I GCAGC 2 cut(s) 104, 700
LweI GCATC 2 cut(s) 247, 301
MaeI CTAG 1 cut(s) 848
MaeIII GTNAC 2 cut(s) 276, 784
MalI GATC 1 cut(s) 807
MboI GATC 1 cut(s) 805
MboII GAAGA 9 cut(s) 9, 18, 55, 220, 507, 562, 608, 988, 996
MfeI CAATTG 1 cut(s) 423
MhlI GDGCHC 2 cut(s) 622, 965
MluCI AATT 4 cut(s) 423, 541, 574, 823
Mph1103I ATGCAT 1 cut(s) 1023
MroXI GAANNNNTTC 1 cut(s) 926
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 1 cut(s) 750
MspI CCGG 1 cut(s) 698
MspR9I CCNGG 2 cut(s) 393, 698
MunI CAATTG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 3 cut(s) 89, 351, 428
NciI CCSGG 1 cut(s) 698
NdeI CATATG 1 cut(s) 1023
NdeII GATC 1 cut(s) 805
NheI GCTAGC 1 cut(s) 847
NlaIII CATG 5 cut(s) 141, 236, 741, 812, 995
NlaIV GGNNCC 5 cut(s) 166, 459, 708, 716, 876
NmuCI GTSAC 2 cut(s) 276, 784
NsiI ATGCAT 1 cut(s) 1023
PdmI GAANNNNTTC 1 cut(s) 926
PfeI GAWTC 2 cut(s) 553, 757
PflMI CCANNNNNTGG 2 cut(s) 203, 749
PkrI GCNGC 2 cut(s) 94, 690
PpuMI RGGWCCY 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 5 cut(s) 166, 459, 708, 716, 876
PspPI GGNCC 6 cut(s) 165, 206, 328, 458, 706, 874
PspPPI RGGWCCY 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 750
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 2 cut(s) 93, 689
Sau3AI GATC 1 cut(s) 805
Sau96I GGNCC 6 cut(s) 165, 206, 328, 458, 706, 874
ScrFI CCNGG 2 cut(s) 393, 698
SduI GDGCHC 2 cut(s) 622, 965
SfaNI GCATC 2 cut(s) 247, 301
SfcI CTRYAG 2 cut(s) 673, 1012
SinI GGWCC 6 cut(s) 165, 206, 328, 458, 706, 874
SmiMI CAYNNNNRTG 1 cut(s) 750
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
Sse9I AATT 4 cut(s) 423, 541, 574, 823
SsiI CCGC 1 cut(s) 106
SspI AATATT 1 cut(s) 529
SspMI CTAG 1 cut(s) 848
StyD4I CCNGG 2 cut(s) 391, 696
TaaI ACNGT 3 cut(s) 183, 550, 1013
TaqI TCGA 2 cut(s) 150, 683
TasI AATT 4 cut(s) 423, 541, 574, 823
TfiI GAWTC 2 cut(s) 553, 757
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 1 cut(s) 555
TseFI GTSAC 2 cut(s) 276, 784
TseI GCWGC 2 cut(s) 92, 688
Tsp45I GTSAC 2 cut(s) 276, 784
TspRI CASTG 1 cut(s) 555
Van91I CCANNNNNTGG 2 cut(s) 203, 749
VpaK11BI GGWCC 6 cut(s) 165, 206, 328, 458, 706, 874
XagI CCTNNNNNAGG 1 cut(s) 335
XapI RAATTY 1 cut(s) 541
XmnI GAANNNNTTC 1 cut(s) 926
XspI CTAG 1 cut(s) 848
Zsp2I ATGCAT 1 cut(s) 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.