Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0014526

Physical Location & Seq

Genomic Coordinates Reverse (-)

5979589 .. 5982092

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG072800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTCTTCTTCTTGTTCTTCTCCTTCTTCTTCTTGGTTTACATTGACATCTTGTTTGACCATTTTCTTCCTGCTTAGTACTTCTGCAAGTTTTGCAGCAAAACCTCACCGCCAACTCTCAGTTGATTACTATGCGAAATCATGTCCCCAACTCGAAAAACTCATCGGGTCCATCACATCCCAACAGTTCAAAGAAGCACCAGTTTCTGGTCCAGCAACCATTCGCCTTTTCTTCCATGACTGCTTTGTAGAAGGCTGTGATGCGTCCATAACCATAAAGTCCCAGCAGGGGAGCAAGGTGTTGGCAGAGAAGGATGCACCAGATAATAAGGACCTGAGGGAGGAAGGCTTTGAAAGTGTGAGGAAAGCAAAGGCTTTGGTAGAAAGCAAGTGTCCTGGTGTTGTGTCTTGTGCTGACATACTTGCAATTGAAGCCAGAGATTATGTCCACTTGGCAGGGGGTCCATACTATCAAGTTAAGAAAGGAAGGTGGGATGGAAGAATATCAATGGCCTCAAGAGTGGCTTCCAATATTCCCCAAGCAAATTTCACAGTGAATCAGCTACTCAAACTCTTCAATTCAAAAGGACTAACACTTGAAGACCTTGTTGTTCTTTCTGGTGCTCATACATTCGGGTATGCACATTGCCAGAACTTCGCAAGCAGGCTCTATGACTACAGAGGCTCGAAGCAGCCTGACCCGGTTATGGACCCGAGGCTCCTAAGGGCGCTAAGAATGTCATGCCCACATTATGGTGGAAATCCTGACATTGTTGCACCATTTGACGTCACTACTCCCTTTGTGTTTGATCATGCCTATTATGGTAATTTAGTGGCTAAGTTGGGCTTGCTAGCTTCAGACCAAGCTTTAGCTTTGGACCCAAGAACCAAACTCATTGTTCAAGCATTTGCAAAAGATAAAGCGAAGTTTTTCCAAGCTTTTGGGGTGGCTATGGAGAAAATGGGCTCAATAGGTGTGAAGAGGGGAAGAAAACATGGGGAGAGAAGAAAAGACTGTAGTATGCATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

343

Amino Acids

37.76

Weight (kDa)

9.13

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	60 - 306	2e-78	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34060
fragaria_vesca	FvH4_2g10460 FvH4_2g10460
malus_domestica	MD05G1306500.v1.1
prunus_persica	Prupe.4G056100_v2.0.a1
pyrus_communis	pycom05g28360
rosa_chinensis	RchiOBHm_Chr5g0009831
rosa_laevigata	RLG00000031704
rosa_multiflora	Rmu_sc0021291.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066360
rosa_rugosa	Rorug04G0446300 Rorug04G0446300
rosa_samantha	Rh5AG077700 Rh5BG072800 Rh5CG085200 Rh5DG073300
rosa_wichuraiana	Rw5G007160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	789
AccB7I	CCANNNNNTGG	2 cut(s)	206, 752
AciI	CCGC	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	840
AcyI	GRCGYC	1 cut(s)	786
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	5 cut(s)	206, 288, 340, 706, 752
AgsI	TTSAA	7 cut(s)	190, 353, 431, 577, 582, 599, 902
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	5 cut(s)	562, 854, 866, 872, 938
AluI	AGCT	5 cut(s)	562, 854, 866, 872, 938
Alw21I	GWGCWC	1 cut(s)	625
AlwNI	CAGNNNCTG	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	712
AoxI	GGCC	1 cut(s)	510
ApeKI	GCWGC	2 cut(s)	95, 691
ApoI	RAATTY	1 cut(s)	544
ArsI	GACNNNNNNTTYG	2 cut(s)	37, 69
Asp700I	GAANNNNTTC	1 cut(s)	929
AspLEI	GCGC	1 cut(s)	730
AspS9I	GGNCC	6 cut(s)	168, 209, 331, 461, 709, 877
AsuC2I	CCSGG	1 cut(s)	701
AsuHPI	GGTGA	1 cut(s)	98
AsuNHI	GCTAGC	1 cut(s)	850
AvaI	CYCGRG	1 cut(s)	712
AvaII	GGWCC	6 cut(s)	168, 209, 331, 461, 709, 877
AxyI	CCTNAGG	2 cut(s)	335, 722
BanII	GRGCYC	1 cut(s)	968
BbsI	GAAGAC	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	2 cut(s)	107, 703
BccI	CCATC	2 cut(s)	179, 488
BciT130I	CCWGG	1 cut(s)	396
BclI	TGATCA	1 cut(s)	808
BcnI	CCSGG	1 cut(s)	701
BfaI	CTAG	1 cut(s)	851
BfmI	CTRYAG	2 cut(s)	676, 1015
BfoI	RGCGCY	1 cut(s)	731
BisI	GCNGC	2 cut(s)	96, 692
BlsI	GCNGC	2 cut(s)	97, 693
BmcAI	AGTACT	1 cut(s)	79
Bme1390I	CCNGG	2 cut(s)	396, 701
Bme18I	GGWCC	6 cut(s)	168, 209, 331, 461, 709, 877
BmeT110I	CYCGRG	1 cut(s)	712
BmgT120I	GGNCC	6 cut(s)	168, 209, 331, 461, 709, 877
BmiI	GGNNCC	5 cut(s)	169, 462, 711, 719, 879
BmrFI	CCNGG	2 cut(s)	396, 701
BmsI	GCATC	2 cut(s)	250, 304
BmtI	GCTAGC	1 cut(s)	854
BpiI	GAAGAC	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	499
BpuMI	CCSGG	1 cut(s)	701
BsaHI	GRCGYC	1 cut(s)	786
BsaJI	CCNNGG	1 cut(s)	713
Bsc4I	CCNNNNNNNGG	5 cut(s)	206, 288, 340, 706, 752
Bse1I	ACTGG	1 cut(s)	200
Bse21I	CCTNAGG	2 cut(s)	335, 722
Bse3DI	GCAATG	1 cut(s)	643
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	713
BseGI	GGATG	3 cut(s)	176, 319, 499
BseLI	CCNNNNNNNGG	5 cut(s)	206, 288, 340, 706, 752
BseMI	GCAATG	1 cut(s)	643
BseMII	CTCAG	2 cut(s)	132, 326
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	107, 703
BseYI	CCCAGC	1 cut(s)	282
BshFI	GGCC	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	625
BsiHKCI	CYCGRG	1 cut(s)	712
BsiSI	CCGG	1 cut(s)	701
BslFI	GGGAC	2 cut(s)	129, 265
BslI	CCNNNNNNNGG	5 cut(s)	206, 288, 340, 706, 752
BsmFI	GGGAC	2 cut(s)	129, 265
BsnI	GGCC	1 cut(s)	512
BsoBI	CYCGRG	1 cut(s)	712
Bsp1286I	GDGCHC	2 cut(s)	625, 968
Bsp143I	GATC	1 cut(s)	808
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	512
BspCNI	CTCAG	2 cut(s)	131, 327
BspLI	GGNNCC	5 cut(s)	169, 462, 711, 719, 879
BspOI	GCTAGC	1 cut(s)	854
BsrDI	GCAATG	1 cut(s)	643
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	713
BssMI	GATC	1 cut(s)	808
BssNI	GRCGYC	1 cut(s)	786
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	3 cut(s)	186, 553, 1016
Bst6I	CTCTTC	2 cut(s)	578, 974
BstACI	GRCGYC	1 cut(s)	786
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	4 cut(s)	661, 665, 848, 852
BstDEI	CTNAG	6 cut(s)	74, 118, 335, 722, 731, 837
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstF5I	GGATG	3 cut(s)	176, 319, 499
BstH2I	RGCGCY	1 cut(s)	731
BstHHI	GCGC	1 cut(s)	730
BstKTI	GATC	1 cut(s)	811
BstMBI	GATC	1 cut(s)	808
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 431
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	394, 699
BstSFI	CTRYAG	2 cut(s)	676, 1015
BstV1I	GCAGC	2 cut(s)	107, 703
BstV2I	GAAGAC	1 cut(s)	606
BstXI	CCANNNNNNTGG	1 cut(s)	941
Bsu36I	CCTNAGG	2 cut(s)	335, 722
BsuRI	GGCC	1 cut(s)	512
BtsCI	GGATG	3 cut(s)	176, 319, 499
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	4 cut(s)	661, 665, 848, 852
CaiI	CAGNNNCTG	1 cut(s)	206
CfoI	GCGC	1 cut(s)	730
Cfr13I	GGNCC	6 cut(s)	168, 209, 331, 461, 709, 877
CseI	GACGC	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	5 cut(s)	141, 236, 741, 812, 995
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	6 cut(s)	74, 118, 335, 722, 731, 837
DpnI	GATC	1 cut(s)	810
DpnII	GATC	1 cut(s)	808
Eam1104I	CTCTTC	2 cut(s)	578, 974
EarI	CTCTTC	2 cut(s)	578, 974
Eco24I	GRGCYC	1 cut(s)	968
Eco47I	GGWCC	6 cut(s)	168, 209, 331, 461, 709, 877
Eco57I	CTGAAG	1 cut(s)	840
Eco81I	CCTNAGG	2 cut(s)	335, 722
Eco88I	CYCGRG	1 cut(s)	712
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	394
EcoT22I	ATGCAT	1 cut(s)	1026
EcoT38I	GRGCYC	1 cut(s)	968
FaeI	CATG	5 cut(s)	144, 239, 744, 815, 998
FalI	AAGNNNNNCTT	4 cut(s)	508, 540, 830, 862
FaqI	GGGAC	2 cut(s)	129, 265
FatI	CATG	5 cut(s)	140, 235, 740, 811, 994
FauNDI	CATATG	1 cut(s)	1026
FbaI	TGATCA	1 cut(s)	808
Fnu4HI	GCNGC	2 cut(s)	96, 692
FokI	GGATG	3 cut(s)	163, 326, 506
FriOI	GRGCYC	1 cut(s)	968
Fsp4HI	GCNGC	2 cut(s)	96, 692
FspBI	CTAG	1 cut(s)	851
GlaI	GCGC	1 cut(s)	729
GluI	GCNGC	2 cut(s)	96, 692
GsaI	CCCAGC	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	731
HaeIII	GGCC	1 cut(s)	512
HapII	CCGG	1 cut(s)	701
HgaI	GACGC	1 cut(s)	252
HhaI	GCGC	1 cut(s)	730
Hin1I	GRCGYC	1 cut(s)	786
Hin1II	CATG	5 cut(s)	144, 239, 744, 815, 998
Hin6I	GCGC	1 cut(s)	728
HinP1I	GCGC	1 cut(s)	728
HindIII	AAGCTT	2 cut(s)	864, 936
HinfI	GANTC	1 cut(s)	556
HpaII	CCGG	1 cut(s)	701
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	39, 448
Hpy188I	TCNGA	1 cut(s)	859
Hpy188III	TCNNGA	2 cut(s)	516, 764
Hpy8I	GTNNAC	2 cut(s)	39, 448
HpyAV	CCTTC	5 cut(s)	33, 245, 304, 338, 480
HpyCH4III	ACNGT	3 cut(s)	186, 553, 1016
HpyCH4IV	ACGT	1 cut(s)	786
HpyCH4V	TGCA	8 cut(s)	86, 95, 317, 425, 641, 776, 911, 1024
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 431
HpyF3I	CTNAG	6 cut(s)	74, 118, 335, 722, 731, 837
HpySE526I	ACGT	1 cut(s)	786
Hsp92I	GRCGYC	1 cut(s)	786
Hsp92II	CATG	5 cut(s)	144, 239, 744, 815, 998
HspAI	GCGC	1 cut(s)	728
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	1 cut(s)	808
LmnI	GCTCC	2 cut(s)	291, 723
Lsp1109I	GCAGC	2 cut(s)	107, 703
LweI	GCATC	2 cut(s)	250, 304
MaeI	CTAG	1 cut(s)	851
MaeII	ACGT	1 cut(s)	786
MaeIII	GTNAC	1 cut(s)	787
MalI	GATC	1 cut(s)	810
MboI	GATC	1 cut(s)	808
MfeI	CAATTG	1 cut(s)	426
MhlI	GDGCHC	2 cut(s)	625, 968
MluCI	AATT	4 cut(s)	426, 544, 577, 826
MnlI	CCTC	8 cut(s)	114, 330, 334, 354, 523, 674, 708, 975
Mph1103I	ATGCAT	1 cut(s)	1026
MroXI	GAANNNNTTC	1 cut(s)	929
MseI	TTAA	1 cut(s)	477
MslI	CAYNNNNRTG	1 cut(s)	753
MspI	CCGG	1 cut(s)	701
MspR9I	CCNGG	2 cut(s)	396, 701
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	2 cut(s)	92, 431
NciI	CCSGG	1 cut(s)	701
NdeI	CATATG	1 cut(s)	1026
NdeII	GATC	1 cut(s)	808
NheI	GCTAGC	1 cut(s)	850
NlaIII	CATG	5 cut(s)	144, 239, 744, 815, 998
NlaIV	GGNNCC	5 cut(s)	169, 462, 711, 719, 879
NmuCI	GTSAC	1 cut(s)	787
NsiI	ATGCAT	1 cut(s)	1026
PdmI	GAANNNNTTC	1 cut(s)	929
PfeI	GAWTC	1 cut(s)	556
PflMI	CCANNNNNTGG	2 cut(s)	206, 752
PkrI	GCNGC	2 cut(s)	97, 693
PpuMI	RGGWCCY	1 cut(s)	331
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	5 cut(s)	169, 462, 711, 719, 879
PspPI	GGNCC	6 cut(s)	168, 209, 331, 461, 709, 877
PspPPI	RGGWCCY	1 cut(s)	331
PstNI	CAGNNNCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	753
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	2 cut(s)	96, 692
Sau3AI	GATC	1 cut(s)	808
Sau96I	GGNCC	6 cut(s)	168, 209, 331, 461, 709, 877
ScaI	AGTACT	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	396, 701
SduI	GDGCHC	2 cut(s)	625, 968
SfaNI	GCATC	2 cut(s)	250, 304
SfcI	CTRYAG	2 cut(s)	676, 1015
SinI	GGWCC	6 cut(s)	168, 209, 331, 461, 709, 877
SmiMI	CAYNNNNRTG	1 cut(s)	753
SmlI	CTYRAG	1 cut(s)	514
SmoI	CTYRAG	1 cut(s)	514
Sse9I	AATT	4 cut(s)	426, 544, 577, 826
SsiI	CCGC	1 cut(s)	109
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	1 cut(s)	851
StyD4I	CCNGG	2 cut(s)	394, 699
TaaI	ACNGT	3 cut(s)	186, 553, 1016
TaiI	ACGT	1 cut(s)	789
TaqI	TCGA	2 cut(s)	153, 686
TasI	AATT	4 cut(s)	426, 544, 577, 826
TatI	WGTACW	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	1 cut(s)	787
TseI	GCWGC	2 cut(s)	95, 691
Tsp45I	GTSAC	1 cut(s)	787
TspRI	CASTG	1 cut(s)	558
Van91I	CCANNNNNTGG	2 cut(s)	206, 752
VpaK11BI	GGWCC	6 cut(s)	168, 209, 331, 461, 709, 877
XagI	CCTNNNNNAGG	1 cut(s)	338
XapI	RAATTY	1 cut(s)	544
XmnI	GAANNNNTTC	1 cut(s)	929
XspI	CTAG	1 cut(s)	851
ZraI	GACGTC	1 cut(s)	787
ZrmI	AGTACT	1 cut(s)	79
Zsp2I	ATGCAT	1 cut(s)	1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.