Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014526

Physical Location & Seq

Genomic Coordinates Forward (+)

29114470 .. 29115930

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28360.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGCCTGTCCTTACTTCCTCTTCTTCTGTTTCTTCTTCGTTTGCATTCACTTGTTTGACCATTTTCTTGCTGCTTATTCTGCACAATAGTACCGCAATTTCCTCATCCAAAACCGCCGCCAATGTGACTCATCAAAGCCGCCAACTCTCGGTTAATTACTATGCCAGATCATGTCCTCAACTCGAACAACTTGTCGGATCCATCACATCCCAACAGTTCAAAGCATCGCCTGTGTCCGGCCCGGCAACCATTCGCCTTTTCTTCCACGACTGCTTTGTAGAAGTAATCACAACTCCACGCAACAATAATGCACATCTGTTTGGTTTAATAATGTGCATGCATGGCTGCGACGCATCGATAATCATAAACTCAGAGCCGGGCAACAAAATGTTGGCCGAGAAGGATGCAGCTGATAACAAGGACCTGAGACAGGAAGCTTTTGAAAGCGTGATGAAAGCCAAAGCTGTGGTGGAGAGCCGATGTCCTGGTGTCGTGTCTTGTGCAGACATACTTGCAATTGCAGCCAGAGATTATGTCCACTTGGCAGGGGGTCCATACTATCAAGTTAAGAAAGGGAGGTGGGATGGAAAAATATCAATGGCTTCGAGAGTGCCCTCTAATATTCCCCAAGCAAATTTCACAGTGGATCAGCTACTCAAACTCTTCAATTCAAAAGGGCTAACACTTGAAGACTTGGTTGTTCTTTCTGGTGCACATACATTCGGCTTTGCTCATTGCCAGAACTTTGTAAGCAGGCTGTATGACTACCGGGGCTCGAAGCAGCCCGACCCAGTTATCGACCCGAGACTCCTGAGGGCCCTAAGAATGTCATGCCCACATTATGGTGGAAATGCCGACGTCGTTGCACCATTTGATGTGACTACGCCGTTTGTGTTTGATCATGCTTATTACGGGAATTTAGAGGCTAAACTGGGATTGCTAGCTTCAGACCAAGCTCTATCTTTGGACCCAAGAACCAAGCCAATTGTCCAGGCTCTGGCACAAGATAAACAAAGATTCTTTCACGCTTTTGCGACGGCCATGGAGAAAATGGGTTCAATAGGTGTGAAAAGAGGAAGAAAGCATGGGGAGAAAAGGAAGGATTGTAGCCTGCATATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

375

Amino Acids

41.05

Weight (kDa)

9.02

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34060
fragaria_vesca	FvH4_2g10460 FvH4_2g10460
malus_domestica	MD05G1306500.v1.1
prunus_persica	Prupe.4G056100_v2.0.a1
pyrus_communis	pycom05g28360
rosa_chinensis	RchiOBHm_Chr5g0009831
rosa_laevigata	RLG00000031704
rosa_multiflora	Rmu_sc0021291.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066360
rosa_rugosa	Rorug04G0446300 Rorug04G0446300
rosa_samantha	Rh5AG077700 Rh5BG072800 Rh5CG085200 Rh5DG073300
rosa_wichuraiana	Rw5G007160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	861
AccB7I	CCANNNNNTGG	2 cut(s)	842, 997
AciI	CCGC	4 cut(s)	93, 114, 117, 139
AclWI	GGATC	3 cut(s)	192, 205, 654
AcoI	YGGCCR	2 cut(s)	393, 1038
AcsI	RAATTY	2 cut(s)	634, 916
AcuI	CTGAAG	1 cut(s)	930
AcyI	GRCGYC	1 cut(s)	858
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	5 cut(s)	148, 236, 430, 842, 997
AgsI	TTSAA	6 cut(s)	220, 443, 667, 672, 689, 1059
AjnI	CCWGG	2 cut(s)	484, 990
AluBI	AGCT	6 cut(s)	410, 437, 464, 652, 944, 956
AluI	AGCT	6 cut(s)	410, 437, 464, 652, 944, 956
Alw21I	GWGCWC	1 cut(s)	715
Alw26I	GTCTC	2 cut(s)	421, 799
Alw44I	GTGCAC	1 cut(s)	711
AlwI	GGATC	3 cut(s)	192, 205, 654
AlwNI	CAGNNNCTG	1 cut(s)	997
Ama87I	CYCGRG	1 cut(s)	802
AoxI	GGCC	4 cut(s)	238, 393, 816, 1038
ApaI	GGGCCC	1 cut(s)	820
ApaLI	GTGCAC	1 cut(s)	711
ApeKI	GCWGC	5 cut(s)	70, 345, 407, 521, 781
ApoI	RAATTY	2 cut(s)	634, 916
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
AspS9I	GGNCC	6 cut(s)	239, 421, 551, 816, 817, 967
AsuC2I	CCSGG	3 cut(s)	242, 378, 770
AsuNHI	GCTAGC	1 cut(s)	940
AvaI	CYCGRG	1 cut(s)	802
AvaII	GGWCC	3 cut(s)	421, 551, 967
AxyI	CCTNAGG	1 cut(s)	812
BaeGI	GKGCMC	3 cut(s)	615, 715, 820
BaeI	ACNNNNGTAYC	2 cut(s)	73, 106
BamHI	GGATCC	1 cut(s)	197
BanII	GRGCYC	2 cut(s)	776, 820
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	715
BbvI	GCAGC	5 cut(s)	57, 332, 419, 533, 793
BccI	CCATC	2 cut(s)	209, 578
BceAI	ACGGC	2 cut(s)	871, 1053
BcgI	CGANNNNNNTGC	4 cut(s)	386, 420, 845, 879
BciT130I	CCWGG	2 cut(s)	486, 992
BclI	TGATCA	1 cut(s)	898
BcnI	CCSGG	3 cut(s)	242, 378, 770
BcoDI	GTCTC	2 cut(s)	421, 799
BfaI	CTAG	1 cut(s)	941
BisI	GCNGC	7 cut(s)	71, 117, 139, 346, 408, 522, 782
BlsI	GCNGC	7 cut(s)	72, 118, 140, 347, 409, 523, 783
Bme1390I	CCNGG	5 cut(s)	242, 378, 486, 770, 992
Bme18I	GGWCC	3 cut(s)	421, 551, 967
BmeT110I	CYCGRG	1 cut(s)	802
BmgT120I	GGNCC	6 cut(s)	239, 421, 551, 816, 817, 967
BmiI	GGNNCC	4 cut(s)	199, 552, 818, 969
BmrFI	CCNGG	5 cut(s)	242, 378, 486, 770, 992
BmrI	ACTGGG	2 cut(s)	785, 941
BmsI	GCATC	3 cut(s)	233, 362, 394
BmtI	GCTAGC	1 cut(s)	944
BmuI	ACTGGG	2 cut(s)	785, 941
BpiI	GAAGAC	1 cut(s)	696
BpuMI	CCSGG	3 cut(s)	242, 378, 770
Bsa29I	ATCGAT	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	858
BsaJI	CCNNGG	2 cut(s)	769, 1041
Bsc4I	CCNNNNNNNGG	5 cut(s)	148, 236, 430, 842, 997
Bse1I	ACTGG	2 cut(s)	791, 936
Bse21I	CCTNAGG	1 cut(s)	812
Bse3DI	GCAATG	1 cut(s)	733
BseBI	CCWGG	2 cut(s)	486, 992
BseCI	ATCGAT	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	769, 1041
BseGI	GGATG	4 cut(s)	104, 206, 409, 589
BseLI	CCNNNNNNNGG	5 cut(s)	148, 236, 430, 842, 997
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	3 cut(s)	384, 416, 803
BseNI	ACTGG	2 cut(s)	791, 936
BseSI	GKGCMC	3 cut(s)	615, 715, 820
BseXI	GCAGC	5 cut(s)	57, 332, 419, 533, 793
BsgI	GTGCAG	2 cut(s)	65, 522
BshFI	GGCC	4 cut(s)	240, 395, 818, 1040
BshVI	ATCGAT	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	715
BsiHKCI	CYCGRG	1 cut(s)	802
BsiSI	CCGG	4 cut(s)	237, 242, 377, 769
BslI	CCNNNNNNNGG	5 cut(s)	148, 236, 430, 842, 997
BsmAI	GTCTC	2 cut(s)	421, 799
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	4 cut(s)	240, 395, 818, 1040
BsoBI	CYCGRG	1 cut(s)	802
Bsp120I	GGGCCC	1 cut(s)	816
Bsp1286I	GDGCHC	4 cut(s)	615, 715, 776, 820
Bsp143I	GATC	4 cut(s)	167, 197, 646, 898
Bsp19I	CCATGG	1 cut(s)	1041
BspACI	CCGC	4 cut(s)	93, 114, 117, 139
BspANI	GGCC	4 cut(s)	240, 395, 818, 1040
BspCNI	CTCAG	3 cut(s)	383, 417, 804
BspDI	ATCGAT	1 cut(s)	356
BspLI	GGNNCC	4 cut(s)	199, 552, 818, 969
BspOI	GCTAGC	1 cut(s)	944
BspPI	GGATC	3 cut(s)	192, 205, 654
BsrDI	GCAATG	1 cut(s)	733
BsrI	ACTGG	2 cut(s)	791, 936
BssECI	CCNNGG	2 cut(s)	769, 1041
BssMI	GATC	4 cut(s)	167, 197, 646, 898
BssNI	GRCGYC	1 cut(s)	858
BssT1I	CCWWGG	1 cut(s)	1041
Bst2UI	CCWGG	2 cut(s)	486, 992
Bst4CI	ACNGT	2 cut(s)	216, 643
Bst6I	CTCTTC	2 cut(s)	25, 668
BstACI	GRCGYC	1 cut(s)	858
BstC8I	GCNNGC	4 cut(s)	338, 755, 942, 1112
BstDEI	CTNAG	4 cut(s)	370, 425, 812, 821
BstDSI	CCRYGG	1 cut(s)	1041
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	4 cut(s)	104, 206, 409, 589
BstKTI	GATC	4 cut(s)	170, 200, 649, 901
BstMAI	GTCTC	2 cut(s)	421, 799
BstMBI	GATC	4 cut(s)	167, 197, 646, 898
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 342, 521
BstNI	CCWGG	2 cut(s)	486, 992
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	5 cut(s)	240, 376, 484, 768, 990
BstSLI	GKGCMC	3 cut(s)	615, 715, 820
BstV1I	GCAGC	5 cut(s)	57, 332, 419, 533, 793
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	197
Bsu15I	ATCGAT	1 cut(s)	356
Bsu36I	CCTNAGG	1 cut(s)	812
BsuRI	GGCC	4 cut(s)	240, 395, 818, 1040
BsuTUI	ATCGAT	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	1041
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	4 cut(s)	104, 206, 409, 589
BtsIMutI	CAGTG	1 cut(s)	648
Cac8I	GCNNGC	4 cut(s)	338, 755, 942, 1112
CaiI	CAGNNNCTG	1 cut(s)	997
Cfr13I	GGNCC	6 cut(s)	239, 421, 551, 816, 817, 967
ClaI	ATCGAT	1 cut(s)	356
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	7 cut(s)	171, 337, 341, 831, 902, 1042, 1085
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	4 cut(s)	370, 425, 812, 821
DpnI	GATC	4 cut(s)	169, 199, 648, 900
DpnII	GATC	4 cut(s)	167, 197, 646, 898
EaeI	YGGCCR	2 cut(s)	393, 1038
Eam1104I	CTCTTC	2 cut(s)	25, 668
EarI	CTCTTC	2 cut(s)	25, 668
Eco130I	CCWWGG	1 cut(s)	1041
Eco24I	GRGCYC	2 cut(s)	776, 820
Eco47I	GGWCC	3 cut(s)	421, 551, 967
Eco57I	CTGAAG	1 cut(s)	930
Eco81I	CCTNAGG	1 cut(s)	812
Eco88I	CYCGRG	1 cut(s)	802
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoO109I	RGGNCCY	3 cut(s)	421, 816, 817
EcoRII	CCWGG	2 cut(s)	484, 990
EcoT14I	CCWWGG	1 cut(s)	1041
EcoT22I	ATGCAT	1 cut(s)	342
EcoT38I	GRGCYC	2 cut(s)	776, 820
ErhI	CCWWGG	1 cut(s)	1041
FaeI	CATG	7 cut(s)	174, 340, 344, 834, 905, 1045, 1088
FatI	CATG	7 cut(s)	170, 336, 340, 830, 901, 1041, 1084
FauNDI	CATATG	1 cut(s)	1116
FbaI	TGATCA	1 cut(s)	898
Fnu4HI	GCNGC	7 cut(s)	71, 117, 139, 346, 408, 522, 782
FokI	GGATG	4 cut(s)	91, 193, 416, 596
FriOI	GRGCYC	2 cut(s)	776, 820
Fsp4HI	GCNGC	7 cut(s)	71, 117, 139, 346, 408, 522, 782
FspBI	CTAG	1 cut(s)	941
GluI	GCNGC	7 cut(s)	71, 117, 139, 346, 408, 522, 782
HaeIII	GGCC	4 cut(s)	240, 395, 818, 1040
HapII	CCGG	4 cut(s)	237, 242, 377, 769
HgaI	GACGC	1 cut(s)	359
Hin1I	GRCGYC	1 cut(s)	858
Hin1II	CATG	7 cut(s)	174, 340, 344, 834, 905, 1045, 1088
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	3 cut(s)	127, 807, 1017
HpaII	CCGG	4 cut(s)	237, 242, 377, 769
Hpy166II	GTNNAC	2 cut(s)	538, 713
Hpy188I	TCNGA	3 cut(s)	197, 373, 949
Hpy188III	TCNNGA	2 cut(s)	606, 811
Hpy8I	GTNNAC	2 cut(s)	538, 713
Hpy99I	CGWCG	4 cut(s)	353, 860, 863, 1039
HpyAV	CCTTC	2 cut(s)	394, 1093
HpyCH4III	ACNGT	2 cut(s)	216, 643
HpyCH4IV	ACGT	1 cut(s)	858
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 342, 521
HpyF3I	CTNAG	4 cut(s)	370, 425, 812, 821
HpySE526I	ACGT	1 cut(s)	858
Hsp92I	GRCGYC	1 cut(s)	858
Hsp92II	CATG	7 cut(s)	174, 340, 344, 834, 905, 1045, 1088
Ksp22I	TGATCA	1 cut(s)	898
Kzo9I	GATC	4 cut(s)	167, 197, 646, 898
Lsp1109I	GCAGC	5 cut(s)	57, 332, 419, 533, 793
LweI	GCATC	3 cut(s)	233, 362, 394
MaeI	CTAG	1 cut(s)	941
MaeII	ACGT	1 cut(s)	858
MaeIII	GTNAC	2 cut(s)	124, 877
MalI	GATC	4 cut(s)	169, 199, 648, 900
MboI	GATC	4 cut(s)	167, 197, 646, 898
MboII	GAAGA	8 cut(s)	12, 15, 24, 27, 253, 655, 701, 1089
MfeI	CAATTG	2 cut(s)	516, 984
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	4 cut(s)	615, 715, 776, 820
MluCI	AATT	7 cut(s)	96, 154, 516, 634, 667, 916, 984
MlyI	GAGTC	2 cut(s)	121, 801
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	8 cut(s)	28, 112, 186, 570, 625, 807, 916, 1067
Mph1103I	ATGCAT	1 cut(s)	342
MseI	TTAA	3 cut(s)	153, 326, 567
MslI	CAYNNNNRTG	1 cut(s)	843
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	4 cut(s)	237, 242, 377, 769
MspR9I	CCNGG	5 cut(s)	242, 378, 486, 770, 992
MunI	CAATTG	2 cut(s)	516, 984
Mva1269I	GAATGC	1 cut(s)	44
MvaI	CCWGG	2 cut(s)	486, 992
MwoI	GCNNNNNNNGC	3 cut(s)	79, 342, 521
NciI	CCSGG	3 cut(s)	242, 378, 770
NcoI	CCATGG	1 cut(s)	1041
NdeI	CATATG	1 cut(s)	1116
NdeII	GATC	4 cut(s)	167, 197, 646, 898
NheI	GCTAGC	1 cut(s)	940
NlaIII	CATG	7 cut(s)	174, 340, 344, 834, 905, 1045, 1088
NlaIV	GGNNCC	4 cut(s)	199, 552, 818, 969
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	2 cut(s)	124, 877
NsiI	ATGCAT	1 cut(s)	342
NspI	RCATGY	1 cut(s)	340
PaeI	GCATGC	1 cut(s)	340
PctI	GAATGC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	1017
PflMI	CCANNNNNTGG	2 cut(s)	842, 997
PkrI	GCNGC	7 cut(s)	72, 118, 140, 347, 409, 523, 783
PleI	GAGTC	2 cut(s)	121, 801
PpsI	GAGTC	2 cut(s)	121, 801
PpuMI	RGGWCCY	1 cut(s)	421
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	2 cut(s)	484, 990
PspGI	CCWGG	2 cut(s)	484, 990
PspN4I	GGNNCC	4 cut(s)	199, 552, 818, 969
PspOMI	GGGCCC	1 cut(s)	816
PspPI	GGNCC	6 cut(s)	239, 421, 551, 816, 817, 967
PspPPI	RGGWCCY	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	997
PsuI	RGATCY	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	843
SaqAI	TTAA	3 cut(s)	153, 326, 567
SatI	GCNGC	7 cut(s)	71, 117, 139, 346, 408, 522, 782
Sau3AI	GATC	4 cut(s)	167, 197, 646, 898
Sau96I	GGNCC	6 cut(s)	239, 421, 551, 816, 817, 967
SchI	GAGTC	2 cut(s)	121, 801
ScrFI	CCNGG	5 cut(s)	242, 378, 486, 770, 992
SduI	GDGCHC	4 cut(s)	615, 715, 776, 820
SfaNI	GCATC	3 cut(s)	233, 362, 394
SinI	GGWCC	3 cut(s)	421, 551, 967
SmiMI	CAYNNNNRTG	1 cut(s)	843
SphI	GCATGC	1 cut(s)	340
Sse9I	AATT	7 cut(s)	96, 154, 516, 634, 667, 916, 984
SsiI	CCGC	4 cut(s)	93, 114, 117, 139
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	1 cut(s)	941
StyD4I	CCNGG	5 cut(s)	240, 376, 484, 768, 990
StyI	CCWWGG	1 cut(s)	1041
TaaI	ACNGT	2 cut(s)	216, 643
TaiI	ACGT	1 cut(s)	861
TaqI	TCGA	5 cut(s)	183, 356, 605, 776, 798
TasI	AATT	7 cut(s)	96, 154, 516, 634, 667, 916, 984
TauI	GCSGC	2 cut(s)	119, 141
TfiI	GAWTC	1 cut(s)	1017
Tru1I	TTAA	3 cut(s)	153, 326, 567
Tru9I	TTAA	3 cut(s)	153, 326, 567
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	2 cut(s)	124, 877
TseI	GCWGC	5 cut(s)	70, 345, 407, 521, 781
Tsp45I	GTSAC	2 cut(s)	124, 877
TspDTI	ATGAA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	648
Van91I	CCANNNNNTGG	2 cut(s)	842, 997
VneI	GTGCAC	1 cut(s)	711
VpaK11BI	GGWCC	3 cut(s)	421, 551, 967
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	2 cut(s)	634, 916
XceI	RCATGY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	2 cut(s)	466, 1048
XspI	CTAG	1 cut(s)	941
ZraI	GACGTC	1 cut(s)	859
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.