Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014526

Physical Location & Seq

Genomic Coordinates Forward (+)

43863293 .. 43865116

Gene Structure 1824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1306500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCCTGTCCTTACTTCCTCTTCTTCTTCTTCTTCGTTTGCATTCACTTGTTTGACCATTTTCTTGCTGCTTATTCTGCACAATAGTACTGCAATTTCCTCATCCAAAACCGCCGCCAATGTGACTCATCGAAGCCGCCAACTCTCGGTTAATTACTATGCCAGATCATGTCCTCAACTCGAACAACTTGTCGGATCCATCACATCCCAACAGTTCAAAGCATCGCCTGTGTCCGGCCCGGCAACCATTCGCCTTTTCTTCCACGACTGCTTTGTAGAAGGCTGCGACGCATCGATAATCATAAACTCAAAGCCGGGCAACAAAATGTTGGCCGAGAAGGATGCAGCTGATAACAAGGACCTGAGACAGGAAGGTTTTGAAAGCGTGATGAAAGCCAAGGCTGTGGTGGAGAGCAAATGTCCTGGTGTCGTGTCCTGTGCAGACATACTTGCAATTGCAGCCAGAGATTATGTCCACTTGGCAGGGGGTCCATACTATCAAGTTACGAAAGGGAGGTGGGATGGAAAAATATCAATGGCTTCAAGAGTGCCCTCTAATATTCCCCAAGCAAATTTCACAGTGGATCAGCTACTCGAACTCTTCAATTCAAAAGGGCTAACACTTGAAGACTTGGTTGTTCTTTCTGGTGCACATACATTTGGCTTTGCTCATTGCCGGAACTTTGTAAGCAGGCTGTATGACTACCGGGGCTCGAAGCAGCCCGACCCAGCTATCGACCAGAGACTCCTGAGGGCCCTAAGAATGTCATGCCCACATTTTGGTGGAAATGCCGACGTTGTTGCACCATTTGATGTGACTACGCCGTTTGTGTTTGATCATGCTTATTACGGGAATTTAGAGGCTAAACTGGGATTGCTAGCTTCAGACCAAGCTCTATCTTCGGATCCAAGAACCAAGCCAATTGTCCAGGCTCTGGCACAAGATAAACAAAAATTCTTTCAAGCTTTTGCGGTGGCCATGGAGAAAATGGGTTCAATAGGTGTGAAAAGAGGAAGAAAGCATGGGGAGAAAAGGAAGGATTGTAGCCTGCATATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

354

Amino Acids

38.6

Weight (kDa)

9.06

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	68 - 315	6.3e-80	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34060
fragaria_vesca	FvH4_2g10460 FvH4_2g10460
malus_domestica	MD05G1306500.v1.1
prunus_persica	Prupe.4G056100_v2.0.a1
pyrus_communis	pycom05g28360
rosa_chinensis	RchiOBHm_Chr5g0009831
rosa_laevigata	RLG00000031704
rosa_multiflora	Rmu_sc0021291.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066360
rosa_rugosa	Rorug04G0446300 Rorug04G0446300
rosa_samantha	Rh5AG077700 Rh5BG072800 Rh5CG085200 Rh5DG073300
rosa_wichuraiana	Rw5G007160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	779, 934
AciI	CCGC	4 cut(s)	111, 114, 136, 971
AclWI	GGATC	5 cut(s)	189, 202, 591, 899, 912
AcoI	YGGCCR	2 cut(s)	330, 975
AcsI	RAATTY	3 cut(s)	571, 853, 953
AcuI	CTGAAG	1 cut(s)	867
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	5 cut(s)	145, 233, 367, 779, 934
AgsI	TTSAA	8 cut(s)	217, 380, 543, 604, 609, 626, 962, 996
AjnI	CCWGG	2 cut(s)	421, 927
AluBI	AGCT	6 cut(s)	347, 589, 731, 881, 893, 965
AluI	AGCT	6 cut(s)	347, 589, 731, 881, 893, 965
Alw21I	GWGCWC	1 cut(s)	652
Alw26I	GTCTC	2 cut(s)	358, 736
Alw44I	GTGCAC	1 cut(s)	648
AlwI	GGATC	5 cut(s)	189, 202, 591, 899, 912
AlwNI	CAGNNNCTG	1 cut(s)	934
AoxI	GGCC	4 cut(s)	235, 330, 753, 975
ApaI	GGGCCC	1 cut(s)	757
ApaLI	GTGCAC	1 cut(s)	648
ApeKI	GCWGC	5 cut(s)	67, 282, 344, 458, 718
ApoI	RAATTY	3 cut(s)	571, 853, 953
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspS9I	GGNCC	5 cut(s)	236, 358, 488, 753, 754
AsuC2I	CCSGG	3 cut(s)	239, 315, 707
AsuNHI	GCTAGC	1 cut(s)	877
AvaII	GGWCC	2 cut(s)	358, 488
AxyI	CCTNAGG	1 cut(s)	749
BaeGI	GKGCMC	3 cut(s)	552, 652, 757
BalI	TGGCCA	1 cut(s)	977
BamHI	GGATCC	2 cut(s)	194, 904
BanII	GRGCYC	2 cut(s)	713, 757
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	1 cut(s)	652
BbvI	GCAGC	5 cut(s)	54, 269, 356, 470, 730
BccI	CCATC	2 cut(s)	206, 515
BceAI	ACGGC	1 cut(s)	808
BcgI	CGANNNNNNTGC	4 cut(s)	323, 357, 782, 816
BciT130I	CCWGG	2 cut(s)	423, 929
BclI	TGATCA	1 cut(s)	835
BcnI	CCSGG	3 cut(s)	239, 315, 707
BcoDI	GTCTC	2 cut(s)	358, 736
BfaI	CTAG	1 cut(s)	878
BisI	GCNGC	7 cut(s)	68, 114, 136, 283, 345, 459, 719
BlsI	GCNGC	7 cut(s)	69, 115, 137, 284, 346, 460, 720
BmcAI	AGTACT	1 cut(s)	88
Bme1390I	CCNGG	5 cut(s)	239, 315, 423, 707, 929
Bme18I	GGWCC	2 cut(s)	358, 488
BmgT120I	GGNCC	5 cut(s)	236, 358, 488, 753, 754
BmiI	GGNNCC	4 cut(s)	196, 489, 755, 906
BmrFI	CCNGG	5 cut(s)	239, 315, 423, 707, 929
BmrI	ACTGGG	1 cut(s)	878
BmsI	GCATC	3 cut(s)	230, 299, 331
BmtI	GCTAGC	1 cut(s)	881
BmuI	ACTGGG	1 cut(s)	878
BpiI	GAAGAC	1 cut(s)	633
BpuMI	CCSGG	3 cut(s)	239, 315, 707
Bsa29I	ATCGAT	1 cut(s)	293
BsaJI	CCNNGG	3 cut(s)	396, 706, 978
Bsc4I	CCNNNNNNNGG	5 cut(s)	145, 233, 367, 779, 934
Bse1I	ACTGG	1 cut(s)	873
Bse21I	CCTNAGG	1 cut(s)	749
Bse3DI	GCAATG	1 cut(s)	670
BseBI	CCWGG	2 cut(s)	423, 929
BseCI	ATCGAT	1 cut(s)	293
BseDI	CCNNGG	3 cut(s)	396, 706, 978
BseGI	GGATG	4 cut(s)	101, 203, 346, 526
BseLI	CCNNNNNNNGG	5 cut(s)	145, 233, 367, 779, 934
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	2 cut(s)	353, 740
BseNI	ACTGG	1 cut(s)	873
BseSI	GKGCMC	3 cut(s)	552, 652, 757
BseXI	GCAGC	5 cut(s)	54, 269, 356, 470, 730
BseYI	CCCAGC	1 cut(s)	727
BsgI	GTGCAG	2 cut(s)	62, 459
BshFI	GGCC	4 cut(s)	237, 332, 755, 977
BshVI	ATCGAT	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	652
BsiSI	CCGG	5 cut(s)	234, 239, 314, 676, 706
BslI	CCNNNNNNNGG	5 cut(s)	145, 233, 367, 779, 934
BsmAI	GTCTC	2 cut(s)	358, 736
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	4 cut(s)	237, 332, 755, 977
Bsp120I	GGGCCC	1 cut(s)	753
Bsp1286I	GDGCHC	4 cut(s)	552, 652, 713, 757
Bsp143I	GATC	5 cut(s)	164, 194, 583, 835, 904
Bsp19I	CCATGG	1 cut(s)	978
BspACI	CCGC	4 cut(s)	111, 114, 136, 971
BspANI	GGCC	4 cut(s)	237, 332, 755, 977
BspCNI	CTCAG	2 cut(s)	354, 741
BspDI	ATCGAT	1 cut(s)	293
BspLI	GGNNCC	4 cut(s)	196, 489, 755, 906
BspOI	GCTAGC	1 cut(s)	881
BspPI	GGATC	5 cut(s)	189, 202, 591, 899, 912
BsrDI	GCAATG	1 cut(s)	670
BsrI	ACTGG	1 cut(s)	873
BssECI	CCNNGG	3 cut(s)	396, 706, 978
BssMI	GATC	5 cut(s)	164, 194, 583, 835, 904
BssT1I	CCWWGG	2 cut(s)	396, 978
Bst2UI	CCWGG	2 cut(s)	423, 929
Bst4CI	ACNGT	2 cut(s)	213, 580
Bst6I	CTCTTC	2 cut(s)	25, 605
BstC8I	GCNNGC	3 cut(s)	692, 879, 1049
BstDEI	CTNAG	3 cut(s)	362, 749, 758
BstDSI	CCRYGG	1 cut(s)	978
BstENI	CCTNNNNNAGG	1 cut(s)	365
BstF5I	GGATG	4 cut(s)	101, 203, 346, 526
BstKTI	GATC	5 cut(s)	167, 197, 586, 838, 907
BstMAI	GTCTC	2 cut(s)	358, 736
BstMBI	GATC	5 cut(s)	164, 194, 583, 835, 904
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 458
BstNI	CCWGG	2 cut(s)	423, 929
BstSCI	CCNGG	5 cut(s)	237, 313, 421, 705, 927
BstSLI	GKGCMC	3 cut(s)	552, 652, 757
BstV1I	GCAGC	5 cut(s)	54, 269, 356, 470, 730
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	2 cut(s)	194, 904
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	2 cut(s)	194, 904
Bsu15I	ATCGAT	1 cut(s)	293
Bsu36I	CCTNAGG	1 cut(s)	749
BsuRI	GGCC	4 cut(s)	237, 332, 755, 977
BsuTUI	ATCGAT	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	978
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	4 cut(s)	101, 203, 346, 526
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	3 cut(s)	692, 879, 1049
CaiI	CAGNNNCTG	1 cut(s)	934
Cfr13I	GGNCC	5 cut(s)	236, 358, 488, 753, 754
ClaI	ATCGAT	1 cut(s)	293
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	5 cut(s)	168, 768, 839, 979, 1022
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	3 cut(s)	362, 749, 758
DpnI	GATC	5 cut(s)	166, 196, 585, 837, 906
DpnII	GATC	5 cut(s)	164, 194, 583, 835, 904
EaeI	YGGCCR	2 cut(s)	330, 975
Eam1104I	CTCTTC	2 cut(s)	25, 605
EarI	CTCTTC	2 cut(s)	25, 605
Eco130I	CCWWGG	2 cut(s)	396, 978
Eco24I	GRGCYC	2 cut(s)	713, 757
Eco47I	GGWCC	2 cut(s)	358, 488
Eco57I	CTGAAG	1 cut(s)	867
Eco81I	CCTNAGG	1 cut(s)	749
EcoNI	CCTNNNNNAGG	1 cut(s)	365
EcoO109I	RGGNCCY	3 cut(s)	358, 753, 754
EcoRII	CCWGG	2 cut(s)	421, 927
EcoT14I	CCWWGG	2 cut(s)	396, 978
EcoT38I	GRGCYC	2 cut(s)	713, 757
ErhI	CCWWGG	2 cut(s)	396, 978
FaeI	CATG	5 cut(s)	171, 771, 842, 982, 1025
FatI	CATG	5 cut(s)	167, 767, 838, 978, 1021
FauNDI	CATATG	1 cut(s)	1053
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	7 cut(s)	68, 114, 136, 283, 345, 459, 719
FokI	GGATG	4 cut(s)	88, 190, 353, 533
FriOI	GRGCYC	2 cut(s)	713, 757
Fsp4HI	GCNGC	7 cut(s)	68, 114, 136, 283, 345, 459, 719
FspBI	CTAG	1 cut(s)	878
GluI	GCNGC	7 cut(s)	68, 114, 136, 283, 345, 459, 719
GsaI	CCCAGC	1 cut(s)	731
HaeIII	GGCC	4 cut(s)	237, 332, 755, 977
HapII	CCGG	5 cut(s)	234, 239, 314, 676, 706
HgaI	GACGC	1 cut(s)	296
Hin1II	CATG	5 cut(s)	171, 771, 842, 982, 1025
HindIII	AAGCTT	1 cut(s)	963
HinfI	GANTC	2 cut(s)	124, 744
HpaII	CCGG	5 cut(s)	234, 239, 314, 676, 706
Hpy166II	GTNNAC	2 cut(s)	475, 650
Hpy188I	TCNGA	3 cut(s)	194, 886, 904
Hpy188III	TCNNGA	2 cut(s)	543, 748
Hpy8I	GTNNAC	2 cut(s)	475, 650
Hpy99I	CGWCG	2 cut(s)	290, 797
HpyAV	CCTTC	4 cut(s)	272, 331, 365, 1030
HpyCH4III	ACNGT	2 cut(s)	213, 580
HpyCH4IV	ACGT	1 cut(s)	795
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 458
HpyF3I	CTNAG	3 cut(s)	362, 749, 758
HpySE526I	ACGT	1 cut(s)	795
Hsp92II	CATG	5 cut(s)	171, 771, 842, 982, 1025
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	5 cut(s)	164, 194, 583, 835, 904
Lsp1109I	GCAGC	5 cut(s)	54, 269, 356, 470, 730
LweI	GCATC	3 cut(s)	230, 299, 331
MaeI	CTAG	1 cut(s)	878
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	3 cut(s)	121, 502, 814
MalI	GATC	5 cut(s)	166, 196, 585, 837, 906
MboI	GATC	5 cut(s)	164, 194, 583, 835, 904
MfeI	CAATTG	2 cut(s)	453, 921
MflI	RGATCY	2 cut(s)	194, 904
MhlI	GDGCHC	4 cut(s)	552, 652, 713, 757
MlsI	TGGCCA	1 cut(s)	977
MluCI	AATT	8 cut(s)	93, 151, 453, 571, 604, 853, 921, 953
MluNI	TGGCCA	1 cut(s)	977
MlyI	GAGTC	2 cut(s)	118, 738
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	8 cut(s)	28, 109, 183, 507, 562, 744, 853, 1004
Mox20I	TGGCCA	1 cut(s)	977
MscI	TGGCCA	1 cut(s)	977
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	780
Msp20I	TGGCCA	1 cut(s)	977
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	5 cut(s)	234, 239, 314, 676, 706
MspR9I	CCNGG	5 cut(s)	239, 315, 423, 707, 929
MunI	CAATTG	2 cut(s)	453, 921
Mva1269I	GAATGC	1 cut(s)	41
MvaI	CCWGG	2 cut(s)	423, 929
MwoI	GCNNNNNNNGC	2 cut(s)	76, 458
NciI	CCSGG	3 cut(s)	239, 315, 707
NcoI	CCATGG	1 cut(s)	978
NdeI	CATATG	1 cut(s)	1053
NdeII	GATC	5 cut(s)	164, 194, 583, 835, 904
NheI	GCTAGC	1 cut(s)	877
NlaIII	CATG	5 cut(s)	171, 771, 842, 982, 1025
NlaIV	GGNNCC	4 cut(s)	196, 489, 755, 906
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	2 cut(s)	121, 814
PctI	GAATGC	1 cut(s)	41
PflMI	CCANNNNNTGG	2 cut(s)	779, 934
PkrI	GCNGC	7 cut(s)	69, 115, 137, 284, 346, 460, 720
PleI	GAGTC	2 cut(s)	118, 738
PpsI	GAGTC	2 cut(s)	118, 738
PpuMI	RGGWCCY	1 cut(s)	358
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	2 cut(s)	421, 927
PspFI	CCCAGC	1 cut(s)	727
PspGI	CCWGG	2 cut(s)	421, 927
PspN4I	GGNNCC	4 cut(s)	196, 489, 755, 906
PspOMI	GGGCCC	1 cut(s)	753
PspPI	GGNCC	5 cut(s)	236, 358, 488, 753, 754
PspPPI	RGGWCCY	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	934
PsuI	RGATCY	2 cut(s)	194, 904
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	780
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	7 cut(s)	68, 114, 136, 283, 345, 459, 719
Sau3AI	GATC	5 cut(s)	164, 194, 583, 835, 904
Sau96I	GGNCC	5 cut(s)	236, 358, 488, 753, 754
ScaI	AGTACT	1 cut(s)	88
SchI	GAGTC	2 cut(s)	118, 738
ScrFI	CCNGG	5 cut(s)	239, 315, 423, 707, 929
SduI	GDGCHC	4 cut(s)	552, 652, 713, 757
SfaNI	GCATC	3 cut(s)	230, 299, 331
SinI	GGWCC	2 cut(s)	358, 488
SmiMI	CAYNNNNRTG	1 cut(s)	780
Sse9I	AATT	8 cut(s)	93, 151, 453, 571, 604, 853, 921, 953
SsiI	CCGC	4 cut(s)	111, 114, 136, 971
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	1 cut(s)	878
StyD4I	CCNGG	5 cut(s)	237, 313, 421, 705, 927
StyI	CCWWGG	2 cut(s)	396, 978
TaaI	ACNGT	2 cut(s)	213, 580
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	6 cut(s)	130, 180, 293, 594, 713, 735
TasI	AATT	8 cut(s)	93, 151, 453, 571, 604, 853, 921, 953
TatI	WGTACW	1 cut(s)	86
TauI	GCSGC	2 cut(s)	116, 138
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	2 cut(s)	121, 814
TseI	GCWGC	5 cut(s)	67, 282, 344, 458, 718
Tsp45I	GTSAC	2 cut(s)	121, 814
TspDTI	ATGAA	1 cut(s)	404
TspRI	CASTG	1 cut(s)	585
Van91I	CCANNNNNTGG	2 cut(s)	779, 934
VneI	GTGCAC	1 cut(s)	648
VpaK11BI	GGWCC	2 cut(s)	358, 488
XagI	CCTNNNNNAGG	1 cut(s)	365
XapI	RAATTY	3 cut(s)	571, 853, 953
XcmI	CCANNNNNNNNNTGG	2 cut(s)	403, 985
XspI	CTAG	1 cut(s)	878
ZrmI	AGTACT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.