AT2G34090

Uncharacterised protein family UPF0052

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004211
Physical Location & Seq
Reverse (-)
14396016 .. 14399275
3260 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34090.3

Sequence Viewer

Length: 1338 bp
ATGGCGGAGATTTGCTATTTTGGGGGTCTAGTCCATTATAAATCACCATCTCTTCCTTTGTCTCTTCATTCTCTCTTCCGCAGCAAGAAGCCACATTACTACAATTCCACTTCTCTCATGGCTGAATGTCTCTCCTCCTCCACCGTGGAGCCTCCTTCTCTCCTCGTCTTCTCAGGTGGTACTGGATTTAATGGTGTGGTTGAAGAGTTGAAGAAGTTAACAACACGAGTCGCTCATGTTCTTCCTGTCTCTGATGATGGTGGAAGTACTGCTGAGATTGTTCGTGTTCTCGGAGGGCCAGCGGTTGGTGATATACGTTCGAGGTGTTTAAGGCTGTCTGATGAGAGTACTTCAGAGGCACTTGCTGTTAGGCGGTTGCTTGGCCATCGCTTACCTATTGATGCACATCAGGCCAAGAAAGATTGGTACGATATTGTAGAAGGTAATCATTCTCTGTGGGATGGTGTATCAAGACCCTACAGTGAAACAATTCGCGCTTTCTTGATATACTTTCAGAATGAGATTCATAGGCGACCTAATGAGAGATTTTGCTTCAGTAATGGAAGCATTGGGAACTTCTTCTTTGCAGGAGCAAGGATATTTTTCCAGTCTTTAGATGCTGCAATTTTTCTGTTTTCACGTGTTTCAGAGATTCCTTGTGACAGTTTGGTCCTCCCAGTGATATCAACCAATGATAGGCTAACACTAGGATGTGAATTACAGGATGGGACTATAATACGCGGACAGAACGAAATTTCTCACCCGACCACTGGGACTACGCAGACAGTTGACAAGAGACATTGTTCTACTTCCGCTCTCCCATCGAAGATAAAGAGAGTGTTTTACATGTCAAGTGAAGGCAATAATCTGCTTCATGAGGTCTTCCCACCAGTTAACCCAACTGTCCTAGAGCAGTTGAGAAGCGTGGACTGTATCGTTTACGCAATGGGATCCCTGTTCACTTCCATTTGCCCATCACTGGTTTTGCTTGGTGTTGGGGAGATTATCTCTTCCAGGTCATGTCGTAAGGTACTTCTTTTGAACGGTAGCCAAGACCGAGAAACAAGCAGGTTCACCGCTTCCTGCTTTGTGACTGCTATCGCTGACGCTCTCAACAGAACTCATGGAGATACTAATATTCGGCTCAAGAATCCCCCTGGATATTACATCAACACTCTCTTGGTCCCGAAAGATGGAGAAATAGCAGTAGATCTCAAACAATTGTCTGAACAAGGGATATATGATGTTAGAGTCGTGGAGAGTGTTGGTGACCCGAAGCACGGTATCTTGTTCAACCCGAGCTCACTGATAAACACACTGGCCGGTTTGGTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0052

Protein Analysis

445

Amino Acids

48.93

Weight (kDa)

6.68

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CofD PF01933 91 - 445 1.8e-39 2-phospho-L-lactate transferase CofD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 39
AasI GACNNNNNNGTC 1 cut(s) 668
Acc36I ACCTGC 1 cut(s) 1059
AccB7I CCANNNNNTGG 1 cut(s) 305
AccBSI CCGCTC 1 cut(s) 815
AccII CGCG 2 cut(s) 495, 741
AciI CCGC 7 cut(s) 5, 79, 302, 373, 741, 813, 1077
AclWI GGATC 2 cut(s) 945, 958
AcoI YGGCCR 2 cut(s) 382, 1320
AcsI RAATTY 1 cut(s) 753
AcuI CTGAAG 2 cut(s) 336, 538
AcvI CACGTG 1 cut(s) 641
AfaI GTAC 5 cut(s) 181, 268, 349, 428, 1032
AfiI CCNNNNNNNGG 6 cut(s) 305, 696, 770, 979, 1193, 1280
AflIII ACRYGT 2 cut(s) 640, 846
AgsI TTSAA 4 cut(s) 203, 211, 1042, 1294
AjnI CCWGG 2 cut(s) 1013, 1156
AluBI AGCT 1 cut(s) 1302
AluI AGCT 1 cut(s) 1302
Alw21I GWGCWC 1 cut(s) 1304
Alw26I GTCTC 4 cut(s) 66, 134, 253, 790
AlwI GGATC 2 cut(s) 945, 958
Ama87I CYCGRG 1 cut(s) 1297
AoxI GGCC 4 cut(s) 296, 382, 411, 1320
ApeKI GCWGC 2 cut(s) 81, 620
ApoI RAATTY 1 cut(s) 753
Asp700I GAANNNNTTC 2 cut(s) 489, 578
AspLEI GCGC 1 cut(s) 497
AspS9I GGNCC 3 cut(s) 296, 670, 1183
AsuHPI GGTGA 5 cut(s) 36, 320, 752, 1066, 1280
AvaI CYCGRG 1 cut(s) 1297
AvaII GGWCC 2 cut(s) 670, 1183
BalI TGGCCA 1 cut(s) 384
BamHI GGATCC 1 cut(s) 950
BanII GRGCYC 1 cut(s) 1304
BarI GAAGNNNNNNTAC 2 cut(s) 80, 112
BauI CACGAG 1 cut(s) 225
BbrPI CACGTG 1 cut(s) 641
BbsI GAAGAC 2 cut(s) 160, 874
Bbv12I GWGCWC 1 cut(s) 1304
BbvI GCAGC 2 cut(s) 93, 607
BccI CCATC 8 cut(s) 55, 251, 393, 455, 719, 829, 982, 1187
BciT130I CCWGG 2 cut(s) 1015, 1158
BcoDI GTCTC 4 cut(s) 66, 134, 253, 790
BfaI CTAG 3 cut(s) 29, 707, 908
BfmI CTRYAG 1 cut(s) 478
BfuAI ACCTGC 1 cut(s) 1059
BglII AGATCT 1 cut(s) 1210
BisI GCNGC 2 cut(s) 82, 621
BlsI GCNGC 2 cut(s) 83, 622
BmcAI AGTACT 2 cut(s) 268, 349
Bme1390I CCNGG 2 cut(s) 1015, 1158
Bme18I GGWCC 2 cut(s) 670, 1183
BmeT110I CYCGRG 1 cut(s) 1297
BmgT120I GGNCC 3 cut(s) 296, 670, 1183
BmiI GGNNCC 3 cut(s) 150, 952, 1185
BmrFI CCNGG 2 cut(s) 1015, 1158
BmrI ACTGGG 2 cut(s) 671, 780
BmsI GCATC 2 cut(s) 391, 607
BmuI ACTGGG 2 cut(s) 671, 780
BpiI GAAGAC 2 cut(s) 160, 874
BplI GAGNNNNNCTC 2 cut(s) 992, 1024
BpuEI CTTGAG 1 cut(s) 1130
BsaAI YACGTR 1 cut(s) 641
BsaBI GATNNNNATC 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 144, 1156
Bsc4I CCNNNNNNNGG 6 cut(s) 305, 696, 770, 979, 1193, 1280
Bse118I RCCGGY 1 cut(s) 1322
Bse1I ACTGG 7 cut(s) 187, 607, 677, 775, 890, 984, 1323
Bse3DI GCAATG 1 cut(s) 951
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 2 cut(s) 1015, 1158
BseDI CCNNGG 2 cut(s) 144, 1156
BseGI GGATG 3 cut(s) 466, 716, 730
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 6 cut(s) 305, 696, 770, 979, 1193, 1280
BseMI GCAATG 1 cut(s) 951
BseMII CTCAG 2 cut(s) 186, 264
BseNI ACTGG 7 cut(s) 187, 607, 677, 775, 890, 984, 1323
BseRI GAGGAG 3 cut(s) 124, 127, 152
BseXI GCAGC 2 cut(s) 93, 607
Bsh1236I CGCG 2 cut(s) 495, 741
BshFI GGCC 4 cut(s) 298, 384, 413, 1322
BsiHKAI GWGCWC 1 cut(s) 1304
BsiHKCI CYCGRG 1 cut(s) 1297
BsiSI CCGG 1 cut(s) 1323
BslFI GGGAC 3 cut(s) 742, 787, 1169
BslI CCNNNNNNNGG 6 cut(s) 305, 696, 770, 979, 1193, 1280
BsmAI GTCTC 4 cut(s) 66, 134, 253, 790
BsmFI GGGAC 3 cut(s) 742, 787, 1169
BsnI GGCC 4 cut(s) 298, 384, 413, 1322
BsoBI CYCGRG 1 cut(s) 1297
Bsp1286I GDGCHC 1 cut(s) 1304
Bsp143I GATC 2 cut(s) 950, 1210
BspACI CCGC 7 cut(s) 5, 79, 302, 373, 741, 813, 1077
BspANI GGCC 4 cut(s) 298, 384, 413, 1322
BspCNI CTCAG 2 cut(s) 185, 265
BspFNI CGCG 2 cut(s) 495, 741
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 3 cut(s) 150, 952, 1185
BspMI ACCTGC 1 cut(s) 1059
BspPI GGATC 2 cut(s) 945, 958
BsrBI CCGCTC 1 cut(s) 815
BsrDI GCAATG 1 cut(s) 951
BsrFI RCCGGY 1 cut(s) 1322
BsrI ACTGG 7 cut(s) 187, 607, 677, 775, 890, 984, 1323
BssAI RCCGGY 1 cut(s) 1322
BssECI CCNNGG 2 cut(s) 144, 1156
BssMI GATC 2 cut(s) 950, 1210
BssSI CACGAG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 225
Bst2UI CCWGG 2 cut(s) 1015, 1158
Bst4CI ACNGT 8 cut(s) 145, 482, 665, 787, 904, 932, 1046, 1283
Bst6I CTCTTC 5 cut(s) 57, 69, 80, 198, 1015
BstBAI YACGTR 1 cut(s) 641
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 172, 273
BstDSI CCRYGG 1 cut(s) 144
BstEII GGTNACC 1 cut(s) 1268
BstF5I GGATG 3 cut(s) 466, 716, 730
BstFNI CGCG 2 cut(s) 495, 741
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 2 cut(s) 953, 1213
BstMAI GTCTC 4 cut(s) 66, 134, 253, 790
BstMBI GATC 2 cut(s) 950, 1210
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 2 cut(s) 1015, 1158
BstNSI RCATGY 1 cut(s) 850
BstPI GGTNACC 1 cut(s) 1268
BstSCI CCNGG 2 cut(s) 1013, 1156
BstSFI CTRYAG 1 cut(s) 478
BstUI CGCG 2 cut(s) 495, 741
BstV1I GCAGC 2 cut(s) 93, 607
BstV2I GAAGAC 2 cut(s) 160, 874
BstX2I RGATCY 2 cut(s) 950, 1210
BstYI RGATCY 2 cut(s) 950, 1210
BsuRI GGCC 4 cut(s) 298, 384, 413, 1322
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 371
BtsCI GGATG 3 cut(s) 466, 716, 730
BtsIMutI CAGTG 6 cut(s) 487, 684, 768, 977, 1304, 1316
BveI ACCTGC 1 cut(s) 1059
Cac8I GCNNGC 1 cut(s) 300
CciI TCATGA 1 cut(s) 874
CfoI GCGC 1 cut(s) 497
Cfr10I RCCGGY 1 cut(s) 1322
Cfr13I GGNCC 3 cut(s) 296, 670, 1183
CseI GACGC 1 cut(s) 1115
Csp6I GTAC 5 cut(s) 180, 267, 348, 427, 1031
CviAII CATG 6 cut(s) 118, 236, 847, 875, 1020, 1124
CviQI GTAC 5 cut(s) 180, 267, 348, 427, 1031
DdeI CTNAG 2 cut(s) 172, 273
DpnI GATC 2 cut(s) 952, 1212
DpnII GATC 2 cut(s) 950, 1210
DrdI GACNNNNNNGTC 1 cut(s) 668
DseDI GACNNNNNNGTC 1 cut(s) 668
EaeI YGGCCR 2 cut(s) 382, 1320
Eam1104I CTCTTC 5 cut(s) 57, 69, 80, 198, 1015
EarI CTCTTC 5 cut(s) 57, 69, 80, 198, 1015
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 1302
Eco24I GRGCYC 1 cut(s) 1304
Eco32I GATATC 1 cut(s) 684
Eco47I GGWCC 2 cut(s) 670, 1183
Eco53kI GAGCTC 1 cut(s) 1302
Eco57I CTGAAG 2 cut(s) 336, 538
Eco72I CACGTG 1 cut(s) 641
Eco88I CYCGRG 1 cut(s) 1297
Eco91I GGTNACC 1 cut(s) 1268
EcoICRI GAGCTC 1 cut(s) 1302
EcoO65I GGTNACC 1 cut(s) 1268
EcoRII CCWGG 2 cut(s) 1013, 1156
EcoRV GATATC 1 cut(s) 684
EcoT38I GRGCYC 1 cut(s) 1304
FaeI CATG 6 cut(s) 121, 239, 850, 878, 1023, 1127
FaqI GGGAC 3 cut(s) 742, 787, 1169
FatI CATG 6 cut(s) 117, 235, 846, 874, 1019, 1123
Fnu4HI GCNGC 2 cut(s) 82, 621
FokI GGATG 3 cut(s) 473, 723, 737
FriOI GRGCYC 1 cut(s) 1304
Fsp4HI GCNGC 2 cut(s) 82, 621
FspBI CTAG 3 cut(s) 29, 707, 908
GlaI GCGC 1 cut(s) 496
GluI GCNGC 2 cut(s) 82, 621
HaeIII GGCC 4 cut(s) 298, 384, 413, 1322
HapII CCGG 1 cut(s) 1323
HgaI GACGC 1 cut(s) 1115
HhaI GCGC 1 cut(s) 497
Hin1II CATG 6 cut(s) 121, 239, 850, 878, 1023, 1127
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HincII GTYRAC 3 cut(s) 219, 790, 895
HindII GTYRAC 3 cut(s) 219, 790, 895
HinfI GANTC 5 cut(s) 228, 523, 652, 1150, 1251
HpaI GTTAAC 2 cut(s) 219, 895
HpaII CCGG 1 cut(s) 1323
HphI GGTGA 5 cut(s) 36, 320, 752, 1066, 1280
Hpy166II GTNNAC 7 cut(s) 219, 790, 895, 928, 940, 960, 1074
Hpy188I TCNGA 7 cut(s) 253, 293, 340, 355, 516, 649, 1228
Hpy188III TCNNGA 5 cut(s) 471, 502, 875, 1147, 1186
Hpy8I GTNNAC 7 cut(s) 219, 790, 895, 928, 940, 960, 1074
HpyAV CCTTC 3 cut(s) 165, 434, 851
HpyCH4III ACNGT 8 cut(s) 145, 482, 665, 787, 904, 932, 1046, 1283
HpyCH4IV ACGT 2 cut(s) 316, 640
HpyCH4V TGCA 3 cut(s) 404, 587, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 2 cut(s) 172, 273
HpySE526I ACGT 2 cut(s) 316, 640
Hsp92II CATG 6 cut(s) 121, 239, 850, 878, 1023, 1127
HspAI GCGC 1 cut(s) 495
KspAI GTTAAC 2 cut(s) 219, 895
Kzo9I GATC 2 cut(s) 950, 1210
LmnI GCTCC 2 cut(s) 148, 590
Lsp1109I GCAGC 2 cut(s) 93, 607
LweI GCATC 2 cut(s) 391, 607
MaeI CTAG 3 cut(s) 29, 707, 908
MaeII ACGT 2 cut(s) 316, 640
MaeIII GTNAC 3 cut(s) 659, 1090, 1268
MalI GATC 2 cut(s) 952, 1212
MbiI CCGCTC 1 cut(s) 815
MboI GATC 2 cut(s) 950, 1210
MfeI CAATTG 1 cut(s) 1220
MflI RGATCY 2 cut(s) 950, 1210
MhlI GDGCHC 1 cut(s) 1304
MlsI TGGCCA 1 cut(s) 384
MluCI AATT 6 cut(s) 103, 489, 624, 716, 753, 1220
MluNI TGGCCA 1 cut(s) 384
MlyI GAGTC 2 cut(s) 237, 1260
MnlI CCTC 9 cut(s) 145, 148, 162, 173, 287, 315, 349, 683, 871
Mox20I TGGCCA 1 cut(s) 384
MroXI GAANNNNTTC 2 cut(s) 489, 578
MscI TGGCCA 1 cut(s) 384
MseI TTAA 4 cut(s) 189, 218, 329, 894
MslI CAYNNNNRTG 1 cut(s) 709
Msp20I TGGCCA 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 1 cut(s) 1323
MspR9I CCNGG 2 cut(s) 1015, 1158
MunI CAATTG 1 cut(s) 1220
MvaI CCWGG 2 cut(s) 1015, 1158
MvnI CGCG 2 cut(s) 495, 741
MwoI GCNNNNNNNGC 1 cut(s) 410
NdeII GATC 2 cut(s) 950, 1210
NlaIII CATG 6 cut(s) 121, 239, 850, 878, 1023, 1127
NlaIV GGNNCC 3 cut(s) 150, 952, 1185
NmuCI GTSAC 3 cut(s) 659, 1090, 1268
NspI RCATGY 1 cut(s) 850
PagI TCATGA 1 cut(s) 874
PciI ACATGT 1 cut(s) 846
PdmI GAANNNNTTC 2 cut(s) 489, 578
PfeI GAWTC 3 cut(s) 523, 652, 1150
PflMI CCANNNNNTGG 1 cut(s) 305
PkrI GCNGC 2 cut(s) 83, 622
PleI GAGTC 2 cut(s) 236, 1259
PmaCI CACGTG 1 cut(s) 641
PmlI CACGTG 1 cut(s) 641
PpsI GAGTC 2 cut(s) 236, 1259
Ppu21I YACGTR 1 cut(s) 641
PscI ACATGT 1 cut(s) 846
PsiI TTATAA 1 cut(s) 39
Psp124BI GAGCTC 1 cut(s) 1304
Psp6I CCWGG 2 cut(s) 1013, 1156
PspCI CACGTG 1 cut(s) 641
PspEI GGTNACC 1 cut(s) 1268
PspGI CCWGG 2 cut(s) 1013, 1156
PspN4I GGNNCC 3 cut(s) 150, 952, 1185
PspPI GGNCC 3 cut(s) 296, 670, 1183
PsuI RGATCY 2 cut(s) 950, 1210
RsaI GTAC 5 cut(s) 181, 268, 349, 428, 1032
RsaNI GTAC 5 cut(s) 180, 267, 348, 427, 1031
RseI CAYNNNNRTG 1 cut(s) 709
SacI GAGCTC 1 cut(s) 1304
SaqAI TTAA 4 cut(s) 189, 218, 329, 894
SatI GCNGC 2 cut(s) 82, 621
Sau3AI GATC 2 cut(s) 950, 1210
Sau96I GGNCC 3 cut(s) 296, 670, 1183
ScaI AGTACT 2 cut(s) 268, 349
SchI GAGTC 2 cut(s) 237, 1260
ScrFI CCNGG 2 cut(s) 1015, 1158
SduI GDGCHC 1 cut(s) 1304
SfaNI GCATC 2 cut(s) 391, 607
SfcI CTRYAG 1 cut(s) 478
SinI GGWCC 2 cut(s) 670, 1183
SmiMI CAYNNNNRTG 1 cut(s) 709
SmlI CTYRAG 1 cut(s) 1145
SmoI CTYRAG 1 cut(s) 1145
Sse9I AATT 6 cut(s) 103, 489, 624, 716, 753, 1220
SsiI CCGC 7 cut(s) 5, 79, 302, 373, 741, 813, 1077
SspI AATATT 1 cut(s) 1138
SspMI CTAG 3 cut(s) 29, 707, 908
SstI GAGCTC 1 cut(s) 1304
StyD4I CCNGG 2 cut(s) 1013, 1156
TaaI ACNGT 8 cut(s) 145, 482, 665, 787, 904, 932, 1046, 1283
TaiI ACGT 2 cut(s) 319, 643
TaqI TCGA 2 cut(s) 320, 824
TaqII GACCGA 1 cut(s) 1071
TasI AATT 6 cut(s) 103, 489, 624, 716, 753, 1220
TatI WGTACW 2 cut(s) 266, 347
TfiI GAWTC 3 cut(s) 523, 652, 1150
Tru1I TTAA 4 cut(s) 189, 218, 329, 894
Tru9I TTAA 4 cut(s) 189, 218, 329, 894
TscAI CASTG 6 cut(s) 487, 684, 775, 984, 1311, 1323
TseFI GTSAC 3 cut(s) 659, 1090, 1268
TseI GCWGC 2 cut(s) 81, 620
Tsp45I GTSAC 3 cut(s) 659, 1090, 1268
TspDTI ATGAA 3 cut(s) 56, 515, 863
TspRI CASTG 6 cut(s) 487, 684, 775, 984, 1311, 1323
Van91I CCANNNNNTGG 1 cut(s) 305
VpaK11BI GGWCC 2 cut(s) 670, 1183
XapI RAATTY 1 cut(s) 753
XceI RCATGY 1 cut(s) 850
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XmnI GAANNNNTTC 2 cut(s) 489, 578
XspI CTAG 3 cut(s) 29, 707, 908
ZrmI AGTACT 2 cut(s) 268, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.