Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00020

Orthogroup ID

OG0004211

Physical Location & Seq

Genomic Coordinates Forward (+)

146888 .. 149980

Gene Structure 3093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G000740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCATCTGATTCACTACCTCCTTGTACTGTTTGCTATTTTCCTCGCTGCTGTTGCTCAAGATTTTGATTTTGTTCCAGATACTGGTGGTCATCAGCCCCTTCAGAACCCTGCCACTGACCCCGATGTAAAAGAGATCGTGGGCTTCGCCGCTCAAGATTATGATTTTATGGAAGATACCGGTGGTTATCAGCCCCTTGAGAACCCTGCCACTGACCCCGATGTAAAAGAGATCGTGGACTTCGCCATCTCGGGGATCAACTCCCAAAGCTTGAAGAACTTGGTCCTCAAGGGAATAGTCCGGGCGGAGCTGCAGATGGTAGAGGGACTCAATTATCATCTTGTGATTGAAGTCATGGACCCTGAGCATCCTAACACAATTAAGGAGTATGAGTTCACTGTCTTTACTAGATATTGGGATAATATTCAGTGTTTAGAGGTGTTTATTGTGCGATTAGCTGGTCCGGCCGTCGGAGATATACGGTCCAGGTGCTTGAGATTGGCCGATAAAAGCACCTCCGAGGCCGTCGCCGTCCGGCAATTGCTCGGTCATCGTTTACCGCTCGATGCACGCCAAGCCAAATCCGAATGGTATGATATTGTGGAAGGAGAACACTCTTTATGGACAGGAGTATCAAAGCCCTATAGGGAAACCATTCGAGCTTTTCTGGTTTATTTTCAGAATCAGATTCTCCGTCGATCTGATGAATCGTTTTGCTTCAGTAATGGCAGCATTGGGAATTTCTTCTTTGCAGGAGCACGTGTATTTTTTCAGTCTTTGGATGCTGCAATATTTTTGTTTTCTCGAGTGTCAGATATCCCATCAGAAAGTCTGGTTCTTCCAGTGATTTCTACTAATGACAGGCTTACATTAGGATGTGAATTATCGGATGGAACTATAATACGAGGGCAGAATGAAATTTCTCATCCAACCAAGGGATATATGGCACTTGTCAATAAGAGACTTTATGAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0052

Protein Analysis

325

Amino Acids

36.62

Weight (kDa)

4.94

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	65 - 124	3.6e-07	Cystatin domain
SQAPI	PF16845	71 - 148	3.3e-14	Aspartic acid proteinase inhibitor
CofD	PF01933	149 - 312	6.7e-08	2-phospho-L-lactate transferase CofD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34090 AT2G34090 AT2G34090 AT2G34090 AT2G34090
fragaria_vesca	FvH4_3g07940 FvH4_3g07940 FvH4_3g07940 FvH4_3g07940 FvH4_3g07940 FvH4_3g07940 FvH4_4g20380 FvH4_4g20380 FvH4_4g20380 FvH4_4g20380 FvH4_4g20380 FvH4_4g20380 FvH4_4g20380
malus_domestica	MD10G1281300.v1.1
prunus_persica	Prupe.4G059900_v2.0.a1
pyrus_communis	pycom10g23490
rosa_chinensis	RchiOBHm_Chr5g0010551
rosa_laevigata	RLG00000031761
rosa_multiflora	Rmu_sc0001429.1_g000001 Rmu_sc0015466.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065780
rosa_rugosa	Rorug04G0450900
rosa_samantha	Rh5BG077400 Rh5DG077500
rosa_wichuraiana	Rw0G000720 Rw0G000740 Rw0G021890 Rw0G021910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	83
AccBSI	CCGCTC	2 cut(s)	152, 562
AciI	CCGC	3 cut(s)	150, 305, 560
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	2 cut(s)	465, 501
AcsI	RAATTY	2 cut(s)	739, 918
AcuI	CTGAAG	2 cut(s)	86, 703
AcvI	CACGTG	1 cut(s)	761
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	4 cut(s)	83, 252, 470, 935
AflIII	ACRYGT	1 cut(s)	760
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	274, 350
AjnI	CCWGG	1 cut(s)	485
AloI	GAACNNNNNNTCC	2 cut(s)	377, 409
AluBI	AGCT	4 cut(s)	270, 310, 458, 662
AluI	AGCT	4 cut(s)	270, 310, 458, 662
Alw21I	GWGCWC	1 cut(s)	760
Alw26I	GTCTC	1 cut(s)	955
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	83
Ama87I	CYCGRG	2 cut(s)	250, 804
AoxI	GGCC	3 cut(s)	465, 501, 522
ApeKI	GCWGC	4 cut(s)	47, 310, 729, 785
ApoI	RAATTY	2 cut(s)	739, 918
AsiGI	ACCGGT	1 cut(s)	179
Asp700I	GAANNNNTTC	2 cut(s)	654, 743
AspS9I	GGNCC	4 cut(s)	283, 358, 461, 483
AsuC2I	CCSGG	1 cut(s)	302
AvaI	CYCGRG	2 cut(s)	250, 804
AvaII	GGWCC	4 cut(s)	283, 358, 461, 483
BaeI	ACNNNNGTAYC	2 cut(s)	615, 648
BbrPI	CACGTG	1 cut(s)	761
Bbv12I	GWGCWC	1 cut(s)	760
BbvI	GCAGC	4 cut(s)	34, 297, 741, 772
BccI	CCATC	4 cut(s)	254, 310, 829, 884
BceAI	ACGGC	3 cut(s)	452, 509, 515
BciT130I	CCWGG	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	955
BfaI	CTAG	2 cut(s)	408, 976
BfmI	CTRYAG	2 cut(s)	311, 643
BisI	GCNGC	5 cut(s)	48, 150, 311, 730, 786
BlsI	GCNGC	5 cut(s)	49, 151, 312, 731, 787
Bme1390I	CCNGG	2 cut(s)	302, 487
Bme18I	GGWCC	4 cut(s)	283, 358, 461, 483
BmeT110I	CYCGRG	2 cut(s)	250, 804
BmgT120I	GGNCC	4 cut(s)	283, 358, 461, 483
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	2 cut(s)	302, 487
BmsI	GCATC	4 cut(s)	13, 376, 556, 772
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	5 cut(s)	42, 138, 218, 272, 514
BpuMI	CCSGG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	761
BsaJI	CCNNGG	2 cut(s)	519, 933
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	4 cut(s)	377, 407, 747, 777
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 252, 470, 935
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	88, 842
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	2 cut(s)	519, 933
BseGI	GGATG	5 cut(s)	367, 787, 881, 895, 925
BseLI	CCNNNNNNNGG	4 cut(s)	83, 252, 470, 935
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	2 cut(s)	88, 842
BseX3I	CGGCCG	1 cut(s)	465
BseXI	GCAGC	4 cut(s)	34, 297, 741, 772
Bsh1285I	CGRYCG	1 cut(s)	468
BshFI	GGCC	3 cut(s)	467, 503, 524
BshTI	ACCGGT	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	468
BsiHKAI	GWGCWC	1 cut(s)	760
BsiHKCI	CYCGRG	2 cut(s)	250, 804
BsiSI	CCGG	4 cut(s)	180, 301, 464, 535
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	4 cut(s)	83, 252, 470, 935
BsmAI	GTCTC	1 cut(s)	955
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	3 cut(s)	467, 503, 524
BsoBI	CYCGRG	2 cut(s)	250, 804
Bsp1286I	GDGCHC	1 cut(s)	760
Bsp143I	GATC	4 cut(s)	135, 231, 255, 698
BspACI	CCGC	3 cut(s)	150, 305, 560
BspANI	GGCC	3 cut(s)	467, 503, 524
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	315
BspPI	GGATC	1 cut(s)	263
BsrBI	CCGCTC	2 cut(s)	152, 562
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	88, 842
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	519, 933
BssMI	GATC	4 cut(s)	135, 231, 255, 698
BssT1I	CCWWGG	1 cut(s)	933
Bst2UI	CCWGG	1 cut(s)	487
Bst4CI	ACNGT	3 cut(s)	30, 400, 483
BstBAI	YACGTR	1 cut(s)	761
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	1 cut(s)	363
BstF5I	GGATG	5 cut(s)	367, 787, 881, 895, 925
BstKTI	GATC	4 cut(s)	138, 234, 258, 701
BstMAI	GTCTC	1 cut(s)	955
BstMBI	GATC	4 cut(s)	135, 231, 255, 698
BstMCI	CGRYCG	1 cut(s)	468
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 464, 575
BstNI	CCWGG	1 cut(s)	487
BstSCI	CCNGG	2 cut(s)	300, 485
BstSFI	CTRYAG	2 cut(s)	311, 643
BstV1I	GCAGC	4 cut(s)	34, 297, 741, 772
BstZI	CGGCCG	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	467, 503, 524
BtsCI	GGATG	5 cut(s)	367, 787, 881, 895, 925
BtsIMutI	CAGTG	5 cut(s)	114, 210, 396, 434, 849
Cac8I	GCNNGC	1 cut(s)	571
CaiI	CAGNNNCTG	1 cut(s)	83
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	4 cut(s)	283, 358, 461, 483
Csp6I	GTAC	1 cut(s)	26
CspAI	ACCGGT	1 cut(s)	179
CviAII	CATG	1 cut(s)	355
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	4 cut(s)	137, 233, 257, 700
DpnII	GATC	4 cut(s)	135, 231, 255, 698
EaeI	YGGCCR	2 cut(s)	465, 501
EagI	CGGCCG	1 cut(s)	465
EciI	GGCGGA	1 cut(s)	320
EclXI	CGGCCG	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	933
Eco32I	GATATC	1 cut(s)	817
Eco47I	GGWCC	4 cut(s)	283, 358, 461, 483
Eco52I	CGGCCG	1 cut(s)	465
Eco57I	CTGAAG	2 cut(s)	86, 703
Eco72I	CACGTG	1 cut(s)	761
Eco88I	CYCGRG	2 cut(s)	250, 804
EcoRII	CCWGG	1 cut(s)	485
EcoRV	GATATC	1 cut(s)	817
EcoT14I	CCWWGG	1 cut(s)	933
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	933
FaeI	CATG	1 cut(s)	358
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	1 cut(s)	354
Fnu4HI	GCNGC	5 cut(s)	48, 150, 311, 730, 786
FokI	GGATG	5 cut(s)	354, 794, 888, 902, 912
Fsp4HI	GCNGC	5 cut(s)	48, 150, 311, 730, 786
FspBI	CTAG	2 cut(s)	408, 976
GluI	GCNGC	5 cut(s)	48, 150, 311, 730, 786
HaeIII	GGCC	3 cut(s)	467, 503, 524
HapII	CCGG	4 cut(s)	180, 301, 464, 535
Hin1II	CATG	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	268
HinfI	GANTC	5 cut(s)	10, 327, 682, 688, 707
HpaII	CCGG	4 cut(s)	180, 301, 464, 535
Hpy166II	GTNNAC	3 cut(s)	238, 396, 557
Hpy188III	TCNNGA	4 cut(s)	59, 77, 155, 804
Hpy8I	GTNNAC	3 cut(s)	238, 396, 557
Hpy99I	CGWCG	3 cut(s)	473, 530, 699
HpyAV	CCTTC	2 cut(s)	110, 599
HpyCH4III	ACNGT	3 cut(s)	30, 400, 483
HpyCH4IV	ACGT	1 cut(s)	760
HpyCH4V	TGCA	5 cut(s)	4, 313, 569, 752, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 464, 575
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	760
Hsp92II	CATG	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	135, 231, 255, 698
LmnI	GCTCC	2 cut(s)	307, 755
Lsp1109I	GCAGC	4 cut(s)	34, 297, 741, 772
LweI	GCATC	4 cut(s)	13, 376, 556, 772
MaeI	CTAG	2 cut(s)	408, 976
MaeII	ACGT	1 cut(s)	760
MalI	GATC	4 cut(s)	137, 233, 257, 700
MbiI	CCGCTC	2 cut(s)	152, 562
MboI	GATC	4 cut(s)	135, 231, 255, 698
MboII	GAAGA	4 cut(s)	185, 286, 736, 830
MfeI	CAATTG	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	760
MluCI	AATT	6 cut(s)	331, 378, 539, 739, 881, 918
MlyI	GAGTC	1 cut(s)	321
MmeI	TCCRAC	2 cut(s)	451, 953
MnlI	CCTC	8 cut(s)	29, 53, 296, 316, 430, 514, 526, 899
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	654, 743
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	874
MspI	CCGG	4 cut(s)	180, 301, 464, 535
MspR9I	CCNGG	2 cut(s)	302, 487
MunI	CAATTG	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	487
MwoI	GCNNNNNNNGC	3 cut(s)	53, 464, 575
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	4 cut(s)	135, 231, 255, 698
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	360
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	804
PdmI	GAANNNNTTC	2 cut(s)	654, 743
PfeI	GAWTC	4 cut(s)	10, 682, 688, 707
PflMI	CCANNNNNTGG	1 cut(s)	83
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	5 cut(s)	49, 151, 312, 731, 787
PleI	GAGTC	1 cut(s)	321
PmaCI	CACGTG	1 cut(s)	761
PmlI	CACGTG	1 cut(s)	761
PpsI	GAGTC	1 cut(s)	321
Ppu21I	YACGTR	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	485
PspCI	CACGTG	1 cut(s)	761
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	4 cut(s)	283, 358, 461, 483
PstI	CTGCAG	1 cut(s)	315
PstNI	CAGNNNCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	874
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	5 cut(s)	48, 150, 311, 730, 786
Sau3AI	GATC	4 cut(s)	135, 231, 255, 698
Sau96I	GGNCC	4 cut(s)	283, 358, 461, 483
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	2 cut(s)	302, 487
SduI	GDGCHC	1 cut(s)	760
SetI	ASST	9 cut(s)	21, 272, 312, 441, 460, 491, 518, 664, 763
SfaNI	GCATC	4 cut(s)	13, 376, 556, 772
SfcI	CTRYAG	2 cut(s)	311, 643
Sfr274I	CTCGAG	1 cut(s)	804
SinI	GGWCC	4 cut(s)	283, 358, 461, 483
SlaI	CTCGAG	1 cut(s)	804
SmiMI	CAYNNNNRTG	1 cut(s)	874
SmlI	CTYRAG	6 cut(s)	57, 153, 197, 287, 493, 804
SmoI	CTYRAG	6 cut(s)	57, 153, 197, 287, 493, 804
Sse9I	AATT	6 cut(s)	331, 378, 539, 739, 881, 918
SsiI	CCGC	3 cut(s)	150, 305, 560
SspI	AATATT	2 cut(s)	424, 792
SspMI	CTAG	2 cut(s)	408, 976
StyD4I	CCNGG	2 cut(s)	300, 485
StyI	CCWWGG	1 cut(s)	933
TaaI	ACNGT	3 cut(s)	30, 400, 483
TaiI	ACGT	1 cut(s)	763
TaqI	TCGA	4 cut(s)	564, 658, 697, 805
TaqII	GACCGA	1 cut(s)	536
TasI	AATT	6 cut(s)	331, 378, 539, 739, 881, 918
TatI	WGTACW	1 cut(s)	25
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	4 cut(s)	10, 682, 688, 707
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	5 cut(s)	121, 217, 403, 434, 849
TseI	GCWGC	4 cut(s)	47, 310, 729, 785
TspDTI	ATGAA	2 cut(s)	720, 930
TspGWI	ACGGA	1 cut(s)	683
TspRI	CASTG	5 cut(s)	121, 217, 403, 434, 849
Van91I	CCANNNNNTGG	1 cut(s)	83
VpaK11BI	GGWCC	4 cut(s)	283, 358, 461, 483
XapI	RAATTY	2 cut(s)	739, 918
XcmI	CCANNNNNNNNNTGG	1 cut(s)	940
XhoI	CTCGAG	1 cut(s)	804
XmnI	GAANNNNTTC	2 cut(s)	654, 743
XspI	CTAG	2 cut(s)	408, 976
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.