Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015466.1

Orthogroup ID

OG0004211

Physical Location & Seq

Genomic Coordinates Forward (+)

519 .. 4667

Gene Structure 4149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015466.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgttctgtttttggtttttacttgaaaaggaaaagagtgatgcgaaggatatgctccaaaaaaaaggaaaggcggtaaaggaaagacgcgggaatatggcggagagttggttgggtccctttccctctccgtttctcactctcaatcttccccagtttccctcctccaccagatctcactccatgtcgactctccgctcccaaaaccctaacccttcctgctcctccattcccaatcccacccccgccgcccagccttccctcctcgtcttctccggcggcaccgccttcaacggcgtcgtcgaggacctcaaaactttcaccacccgcgtcgcccacgtccttcccgtttccgatgacggaggcagcaccgccgagatcgtccgcgtcctcggtggtccggccgtcggagatatacggtccaggtgcttgagattggccgataaaagcacctccgaggccgtcgccgtccggcaattgctcggtcatcgtttaccgctcgatgcacgccaagccaaatccgaatggtatgatattgtggaaggagaacacaatttatggacaggagtatcaaagccctatagggaaaccattcgagcttttctggtttattttcagaatcagattctccgtcgatctgatgactcgttttgcttcagtaatggcagcattgggaatttcttctttgcaggagcacgtgtattttttcggtctttggatgctgcaatatttttgttttctcgagtgtcagatatcccatcagaaagtctggttcttccagtgatttctactaatgacaggcttacgttaggatgtgaattatcggatggaactataatacgagggcagaatgaaatttctcatccaaccaagggatatatggcacttgtcaataagcccagtcattatatcaataccctcttggtgcccaaagatggtgagatacctgttaatgttcaatgcttagctgaccaaggaatttttgaagtgattgttgttgactctgtacatgatccaaaagtaggtgtggtatttgaccccaagtcgttaatacaagcccttgatgatttgataggcagacacatgcctacaaatgttaaggtggtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0052

Protein Analysis

369

Amino Acids

40.67

Weight (kDa)

7.66

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34090 AT2G34090 AT2G34090 AT2G34090 AT2G34090
fragaria_vesca	FvH4_3g07940 FvH4_3g07940 FvH4_3g07940 FvH4_3g07940 FvH4_3g07940 FvH4_3g07940 FvH4_4g20380 FvH4_4g20380 FvH4_4g20380 FvH4_4g20380 FvH4_4g20380 FvH4_4g20380 FvH4_4g20380
malus_domestica	MD10G1281300.v1.1
prunus_persica	Prupe.4G059900_v2.0.a1
pyrus_communis	pycom10g23490
rosa_chinensis	RchiOBHm_Chr5g0010551
rosa_laevigata	RLG00000031761
rosa_multiflora	Rmu_sc0001429.1_g000001 Rmu_sc0015466.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065780
rosa_rugosa	Rorug04G0450900
rosa_samantha	Rh5BG077400 Rh5DG077500
rosa_wichuraiana	Rw0G000720 Rw0G000740 Rw0G021890 Rw0G021910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	281, 925
AccBSI	CCGCTC	2 cut(s)	198, 499
AccI	GTMKAC	1 cut(s)	188
AccII	CGCG	3 cut(s)	90, 330, 387
AclWI	GGATC	1 cut(s)	1007
AcoI	YGGCCR	2 cut(s)	402, 438
AcsI	RAATTY	3 cut(s)	676, 855, 978
AcuI	CTGAAG	1 cut(s)	640
AcvI	CACGTG	1 cut(s)	698
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	1008
AfiI	CCNNNNNNNGG	4 cut(s)	407, 872, 935, 1022
AflIII	ACRYGT	1 cut(s)	697
AgsI	TTSAA	4 cut(s)	26, 292, 959, 986
AhdI	GACNNNNNGTC	1 cut(s)	1042
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	422
AluBI	AGCT	2 cut(s)	599, 968
AluI	AGCT	2 cut(s)	599, 968
Alw21I	GWGCWC	1 cut(s)	697
AlwI	GGATC	1 cut(s)	1007
Ama87I	CYCGRG	1 cut(s)	741
AoxI	GGCC	3 cut(s)	402, 438, 459
ApeKI	GCWGC	3 cut(s)	366, 666, 722
ApoI	RAATTY	3 cut(s)	676, 855, 978
Asp700I	GAANNNNTTC	2 cut(s)	591, 680
AspS9I	GGNCC	4 cut(s)	116, 307, 398, 420
AsuHPI	GGTGA	2 cut(s)	313, 950
AvaI	CYCGRG	1 cut(s)	741
AvaII	GGWCC	4 cut(s)	116, 307, 398, 420
BaeGI	GKGCMC	1 cut(s)	930
BaeI	ACNNNNGTAYC	2 cut(s)	552, 585
BanI	GGYRCC	2 cut(s)	281, 925
BbrPI	CACGTG	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	697
BbvI	GCAGC	3 cut(s)	378, 678, 709
BccI	CCATC	3 cut(s)	766, 821, 929
BceAI	ACGGC	4 cut(s)	310, 389, 446, 452
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	1 cut(s)	424
BfmI	CTRYAG	1 cut(s)	580
BglII	AGATCT	1 cut(s)	173
BisI	GCNGC	5 cut(s)	249, 280, 367, 667, 723
BlpI	GCTNAGC	1 cut(s)	964
BlsI	GCNGC	5 cut(s)	250, 281, 368, 668, 724
Bme1390I	CCNGG	1 cut(s)	424
Bme18I	GGWCC	4 cut(s)	116, 307, 398, 420
BmeRI	GACNNNNNGTC	1 cut(s)	1042
BmeT110I	CYCGRG	1 cut(s)	741
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	4 cut(s)	116, 307, 398, 420
BmiI	GGNNCC	4 cut(s)	117, 118, 283, 927
BmrFI	CCNGG	1 cut(s)	424
BmrI	ACTGGG	2 cut(s)	148, 894
BmsI	GCATC	3 cut(s)	31, 493, 709
BmuI	ACTGGG	2 cut(s)	148, 894
BpiI	GAAGAC	1 cut(s)	262
Bpu1102I	GCTNAGC	1 cut(s)	964
BpuEI	CTTGAG	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	698
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	4 cut(s)	391, 456, 870, 973
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 684, 714
Bsc4I	CCNNNNNNNGG	4 cut(s)	407, 872, 935, 1022
Bse1I	ACTGG	3 cut(s)	154, 779, 900
BseBI	CCWGG	1 cut(s)	424
BseDI	CCNNGG	4 cut(s)	391, 456, 870, 973
BseGI	GGATG	4 cut(s)	724, 818, 832, 862
BseLI	CCNNNNNNNGG	4 cut(s)	407, 872, 935, 1022
BseNI	ACTGG	3 cut(s)	154, 779, 900
BseRI	GAGGAG	3 cut(s)	154, 214, 254
BseSI	GKGCMC	1 cut(s)	930
BseX3I	CGGCCG	1 cut(s)	402
BseXI	GCAGC	3 cut(s)	378, 678, 709
BseYI	CCCAGC	1 cut(s)	252
Bsh1236I	CGCG	3 cut(s)	90, 330, 387
Bsh1285I	CGRYCG	1 cut(s)	405
BshFI	GGCC	3 cut(s)	404, 440, 461
BshNI	GGYRCC	2 cut(s)	281, 925
BsiEI	CGRYCG	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	697
BsiHKCI	CYCGRG	1 cut(s)	741
BsiSI	CCGG	3 cut(s)	276, 401, 472
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	4 cut(s)	407, 872, 935, 1022
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	3 cut(s)	404, 440, 461
BsoBI	CYCGRG	1 cut(s)	741
Bsp1286I	GDGCHC	2 cut(s)	697, 930
Bsp1407I	TGTACA	1 cut(s)	1006
Bsp143I	GATC	4 cut(s)	173, 378, 635, 1012
Bsp1720I	GCTNAGC	1 cut(s)	964
BspANI	GGCC	3 cut(s)	404, 440, 461
BspFNI	CGCG	3 cut(s)	90, 330, 387
BspLI	GGNNCC	4 cut(s)	117, 118, 283, 927
BspPI	GGATC	1 cut(s)	1007
BspT107I	GGYRCC	2 cut(s)	281, 925
BsrBI	CCGCTC	2 cut(s)	198, 499
BsrGI	TGTACA	1 cut(s)	1006
BsrI	ACTGG	3 cut(s)	154, 779, 900
BssECI	CCNNGG	4 cut(s)	391, 456, 870, 973
BssMI	GATC	4 cut(s)	173, 378, 635, 1012
BssNI	GRCGYC	1 cut(s)	297
BssT1I	CCWWGG	2 cut(s)	870, 973
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	420
BstACI	GRCGYC	1 cut(s)	297
BstAUI	TGTACA	1 cut(s)	1006
BstBAI	YACGTR	1 cut(s)	698
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	1 cut(s)	964
BstF5I	GGATG	4 cut(s)	724, 818, 832, 862
BstFNI	CGCG	3 cut(s)	90, 330, 387
BstKTI	GATC	4 cut(s)	176, 381, 638, 1015
BstMBI	GATC	4 cut(s)	173, 378, 635, 1012
BstMCI	CGRYCG	1 cut(s)	405
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	1 cut(s)	424
BstNSI	RCATGY	1 cut(s)	1087
BstSCI	CCNGG	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	580
BstSLI	GKGCMC	1 cut(s)	930
BstUI	CGCG	3 cut(s)	90, 330, 387
BstV1I	GCAGC	3 cut(s)	378, 678, 709
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BstZI	CGGCCG	1 cut(s)	402
BsuRI	GGCC	3 cut(s)	404, 440, 461
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	4 cut(s)	724, 818, 832, 862
BtsIMutI	CAGTG	1 cut(s)	786
Cac8I	GCNNGC	1 cut(s)	508
Cfr13I	GGNCC	4 cut(s)	116, 307, 398, 420
CseI	GACGC	4 cut(s)	96, 286, 319, 376
Csp6I	GTAC	1 cut(s)	1007
CviAII	CATG	3 cut(s)	184, 1010, 1084
CviQI	GTAC	1 cut(s)	1007
DdeI	CTNAG	1 cut(s)	964
DpnI	GATC	4 cut(s)	175, 380, 637, 1014
DpnII	GATC	4 cut(s)	173, 378, 635, 1012
DriI	GACNNNNNGTC	1 cut(s)	1042
EaeI	YGGCCR	2 cut(s)	402, 438
EagI	CGGCCG	1 cut(s)	402
Eam1105I	GACNNNNNGTC	1 cut(s)	1042
EciI	GGCGGA	1 cut(s)	116
EclXI	CGGCCG	1 cut(s)	402
Eco130I	CCWWGG	2 cut(s)	870, 973
Eco32I	GATATC	1 cut(s)	754
Eco47I	GGWCC	4 cut(s)	116, 307, 398, 420
Eco52I	CGGCCG	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	640
Eco72I	CACGTG	1 cut(s)	698
Eco88I	CYCGRG	1 cut(s)	741
EcoO109I	RGGNCCY	2 cut(s)	116, 307
EcoRII	CCWGG	1 cut(s)	422
EcoRV	GATATC	1 cut(s)	754
EcoT14I	CCWWGG	2 cut(s)	870, 973
ErhI	CCWWGG	2 cut(s)	870, 973
FaeI	CATG	3 cut(s)	187, 1013, 1087
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	3 cut(s)	183, 1009, 1083
FauI	CCCGC	3 cut(s)	83, 253, 335
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	5 cut(s)	249, 280, 367, 667, 723
FokI	GGATG	4 cut(s)	731, 825, 839, 849
Fsp4HI	GCNGC	5 cut(s)	249, 280, 367, 667, 723
GluI	GCNGC	5 cut(s)	249, 280, 367, 667, 723
GsaI	CCCAGC	1 cut(s)	256
HaeIII	GGCC	3 cut(s)	404, 440, 461
HapII	CCGG	3 cut(s)	276, 401, 472
HgaI	GACGC	4 cut(s)	96, 286, 319, 376
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	3 cut(s)	187, 1013, 1087
HincII	GTYRAC	2 cut(s)	189, 1000
HindII	GTYRAC	2 cut(s)	189, 1000
HinfI	GANTC	5 cut(s)	190, 619, 625, 644, 1001
HpaII	CCGG	3 cut(s)	276, 401, 472
HphI	GGTGA	2 cut(s)	313, 950
Hpy166II	GTNNAC	3 cut(s)	189, 494, 1000
Hpy188III	TCNNGA	1 cut(s)	741
Hpy8I	GTNNAC	3 cut(s)	189, 494, 1000
Hpy99I	CGWCG	6 cut(s)	302, 305, 335, 410, 467, 636
HpyAV	CCTTC	6 cut(s)	40, 225, 267, 298, 353, 536
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	3 cut(s)	339, 697, 806
HpyCH4V	TGCA	3 cut(s)	506, 689, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	1 cut(s)	964
HpySE526I	ACGT	3 cut(s)	339, 697, 806
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	187, 1013, 1087
KflI	GGGWCCC	1 cut(s)	116
Kzo9I	GATC	4 cut(s)	173, 378, 635, 1012
LmnI	GCTCC	4 cut(s)	60, 203, 227, 692
Lsp1109I	GCAGC	3 cut(s)	378, 678, 709
LweI	GCATC	3 cut(s)	31, 493, 709
MaeII	ACGT	3 cut(s)	339, 697, 806
MalI	GATC	4 cut(s)	175, 380, 637, 1014
MbiI	CCGCTC	2 cut(s)	198, 499
MboI	GATC	4 cut(s)	173, 378, 635, 1012
MboII	GAAGA	4 cut(s)	140, 262, 673, 767
MfeI	CAATTG	1 cut(s)	476
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	2 cut(s)	697, 930
MluCI	AATT	6 cut(s)	476, 553, 676, 818, 855, 978
MlyI	GAGTC	3 cut(s)	184, 638, 995
MmeI	TCCRAC	2 cut(s)	388, 890
MroXI	GAANNNNTTC	2 cut(s)	591, 680
MseI	TTAA	3 cut(s)	951, 1049, 1098
MspI	CCGG	3 cut(s)	276, 401, 472
MspR9I	CCNGG	1 cut(s)	424
MunI	CAATTG	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	424
MvnI	CGCG	3 cut(s)	90, 330, 387
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeII	GATC	4 cut(s)	173, 378, 635, 1012
NlaIII	CATG	3 cut(s)	187, 1013, 1087
NlaIV	GGNNCC	4 cut(s)	117, 118, 283, 927
NmeAIII	GCCGAG	1 cut(s)	400
NspI	RCATGY	1 cut(s)	1087
PaeR7I	CTCGAG	1 cut(s)	741
PcsI	WCGNNNNNNNCGW	2 cut(s)	300, 345
PdmI	GAANNNNTTC	2 cut(s)	591, 680
PfeI	GAWTC	2 cut(s)	619, 625
PkrI	GCNGC	5 cut(s)	250, 281, 368, 668, 724
PleI	GAGTC	3 cut(s)	184, 638, 995
PmaCI	CACGTG	1 cut(s)	698
PmlI	CACGTG	1 cut(s)	698
PpsI	GAGTC	3 cut(s)	184, 638, 995
Ppu21I	YACGTR	1 cut(s)	698
PpuMI	RGGWCCY	2 cut(s)	116, 307
Psp5II	RGGWCCY	2 cut(s)	116, 307
Psp6I	CCWGG	1 cut(s)	422
PspCI	CACGTG	1 cut(s)	698
PspFI	CCCAGC	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	4 cut(s)	117, 118, 283, 927
PspPI	GGNCC	4 cut(s)	116, 307, 398, 420
PspPPI	RGGWCCY	2 cut(s)	116, 307
PsuI	RGATCY	1 cut(s)	173
RsaI	GTAC	1 cut(s)	1008
RsaNI	GTAC	1 cut(s)	1007
SalI	GTCGAC	1 cut(s)	187
SaqAI	TTAA	3 cut(s)	951, 1049, 1098
SatI	GCNGC	5 cut(s)	249, 280, 367, 667, 723
Sau3AI	GATC	4 cut(s)	173, 378, 635, 1012
Sau96I	GGNCC	4 cut(s)	116, 307, 398, 420
SchI	GAGTC	3 cut(s)	184, 638, 995
ScrFI	CCNGG	1 cut(s)	424
SduI	GDGCHC	2 cut(s)	697, 930
SfaNI	GCATC	3 cut(s)	31, 493, 709
SfcI	CTRYAG	1 cut(s)	580
Sfr274I	CTCGAG	1 cut(s)	741
SinI	GGWCC	4 cut(s)	116, 307, 398, 420
SlaI	CTCGAG	1 cut(s)	741
SmlI	CTYRAG	2 cut(s)	430, 741
SmoI	CTYRAG	2 cut(s)	430, 741
Sse9I	AATT	6 cut(s)	476, 553, 676, 818, 855, 978
SspI	AATATT	1 cut(s)	729
StyD4I	CCNGG	1 cut(s)	422
StyI	CCWWGG	2 cut(s)	870, 973
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	3 cut(s)	342, 700, 809
TaqI	TCGA	6 cut(s)	188, 303, 501, 595, 634, 742
TaqII	GACCGA	2 cut(s)	473, 699
TasI	AATT	6 cut(s)	476, 553, 676, 818, 855, 978
TatI	WGTACW	1 cut(s)	1006
TauI	GCSGC	2 cut(s)	251, 282
TfiI	GAWTC	2 cut(s)	619, 625
Tru1I	TTAA	3 cut(s)	951, 1049, 1098
Tru9I	TTAA	3 cut(s)	951, 1049, 1098
TscAI	CASTG	1 cut(s)	786
TseI	GCWGC	3 cut(s)	366, 666, 722
TspDTI	ATGAA	1 cut(s)	867
TspGWI	ACGGA	3 cut(s)	120, 375, 620
TspRI	CASTG	1 cut(s)	786
VpaK11BI	GGWCC	4 cut(s)	116, 307, 398, 420
XapI	RAATTY	3 cut(s)	676, 855, 978
XceI	RCATGY	1 cut(s)	1087
XcmI	CCANNNNNNNNNTGG	1 cut(s)	877
XhoI	CTCGAG	1 cut(s)	741
XmiI	GTMKAC	1 cut(s)	188
XmnI	GAANNNNTTC	2 cut(s)	591, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.