Rorug04G0450900

Uncharacterised protein family UPF0052

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004211
Physical Location & Seq
Reverse (-)
60593049 .. 60594768
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0450900.1

Sequence Viewer

Length: 1077 bp
ATGAATATACATAACAAGTATCGGATGGTGAGAAGTGTGGGAGAGGATTGCAGTGAAGAAAAAGAGCTCAAGACTTTGATAGCTAATAAGCCTGAACCTATCTGCTTCAAGCGCTTTCAACCCTCCGGCCTAATGCACATTGCTGAGGGAATTATGGAGGTGATGAATGTGAACAAGCTGACTAATGCCGGCTGCAGAGTTAAAATCTTGATTGGGGATCAGTTAGCACGCATGAACAAGAAGTTGGGGGGAGACATGGAGAAGATAGAGACTCTCGGACTATATATGATTGAGGTATGGAAGGCAATGGGGATGAATCTCAAAGATGGCAAAGTAGAGATTTTATGGTCTTCAAAGGAGATTGGCTCGAGGGTAAATGAGTATTTGGATCTTGTGTCAGATATAACTGACAAAAATAGTCTTGCAAGGTTAAAGAGGTGCTGGAAACTAATGGATCGAACTGATGAAGTAGTCTATTTAAATGCGTCCCAAATTTCTACCTTAGGCATGCAATGTGCAGATATATTTTTCCTACAGGCTGACATCTGCCAGTTTGGAATGGATAAGCGGGAAGTGAACATTCTTGCAAGAGAGTACTGTGATGAAATCCAGAGGAAGAACAAGCCTATTGTCTTGTCACACCATATATTACCCGGTTTGAAGGAAGGGCAGGGGAAAATGTCAAAGAAGATTCCCGATTCTGCCATATTCATGAACGATAATGAGGCTGAAGTAAATCGGAAGATAGAGGAAGCTTTCTGCCCTGAAAAGGTTGTTGAAGGGAATCCATGTTTGGAGTACATTAAGTACCTCATTTTCCCTTGGTTTAATGGATTGGTTGTGGAGCAAATTGAACAGGATGGTGGAGTTAGGACCTTCAAAAGCTTTGAAGATTTGATTGTTCATTATCAATGTGGTATTCTACAACCAGATGACCTTAAAGTGGCTTTATCCAAAGCCATTAACAAAATATTGCAGATTGCGAACGTCATCTGTAGGTTCAAAGGATACTTTGCCATTACATTAGACCTGTCTTCTGGAACTCCACTGTCGGTTATATTATTTACTGCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0052

Protein Analysis

358

Amino Acids

40.69

Weight (kDa)

6.56

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 33 - 326 6.7e-43 tRNA synthetases class I (W and Y)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 568
AclWI GGATC 3 cut(s) 225, 396, 462
AcsI RAATTY 1 cut(s) 492
AcuI CTGAAG 1 cut(s) 750
AfaI GTAC 3 cut(s) 596, 800, 809
AfeI AGCGCT 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 769, 943
AgsI TTSAA 9 cut(s) 109, 119, 354, 661, 779, 854, 880, 890, 1003
AjuI GAANNNNNNNTTGG 4 cut(s) 227, 259, 776, 808
AluBI AGCT 6 cut(s) 67, 83, 178, 755, 885, 1074
AluI AGCT 6 cut(s) 67, 83, 178, 755, 885, 1074
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 2 cut(s) 246, 263
AlwI GGATC 3 cut(s) 225, 396, 462
Ama87I CYCGRG 1 cut(s) 367
Aor51HI AGCGCT 1 cut(s) 113
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 492
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 873
AsuC2I CCSGG 1 cut(s) 654
AsuHPI GGTGA 2 cut(s) 40, 172
AsuNHI GCTAGC 1 cut(s) 1070
AvaI CYCGRG 1 cut(s) 367
AvaII GGWCC 1 cut(s) 873
AxyI CCTNAGG 1 cut(s) 502
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 342, 1026
Bbv12I GWGCWC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 179
BccI CCATC 3 cut(s) 19, 320, 854
BciVI GTATCC 1 cut(s) 1001
BcnI CCSGG 1 cut(s) 654
BcoDI GTCTC 2 cut(s) 246, 263
BfaI CTAG 1 cut(s) 1071
BfmI CTRYAG 3 cut(s) 193, 533, 994
BfoI RGCGCY 1 cut(s) 115
BfuI GTATCC 1 cut(s) 1001
BisI GCNGC 1 cut(s) 193
BlsI GCNGC 1 cut(s) 194
BmcAI AGTACT 1 cut(s) 596
Bme1390I CCNGG 1 cut(s) 654
Bme18I GGWCC 1 cut(s) 873
BmeT110I CYCGRG 1 cut(s) 367
BmgT120I GGNCC 1 cut(s) 873
BmrFI CCNGG 1 cut(s) 654
BmtI GCTAGC 1 cut(s) 1074
BpiI GAAGAC 2 cut(s) 342, 1026
BplI GAGNNNNNCTC 2 cut(s) 350, 382
Bpu10I CCTNAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 654
BsaJI CCNNGG 1 cut(s) 821
Bsc4I CCNNNNNNNGG 2 cut(s) 769, 943
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 550
Bse21I CCTNAGG 1 cut(s) 502
Bse3DI GCAATG 3 cut(s) 138, 312, 518
BseDI CCNNGG 1 cut(s) 821
BseGI GGATG 3 cut(s) 30, 318, 865
BseLI CCNNNNNNNGG 2 cut(s) 769, 943
BseMI GCAATG 3 cut(s) 138, 312, 518
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 550
BseXI GCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 537
BshFI GGCC 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 367
BsiSI CCGG 3 cut(s) 126, 189, 654
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 2 cut(s) 769, 943
BsmAI GTCTC 2 cut(s) 246, 263
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 3 cut(s) 217, 388, 454
BspACI CCGC 1 cut(s) 568
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 136
BspHI TCATGA 1 cut(s) 711
BspMAI CTGCAG 1 cut(s) 197
BspOI GCTAGC 1 cut(s) 1074
BspPI GGATC 3 cut(s) 225, 396, 462
BsrDI GCAATG 3 cut(s) 138, 312, 518
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 1 cut(s) 550
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 821
BssMI GATC 3 cut(s) 217, 388, 454
BssT1I CCWWGG 1 cut(s) 821
Bst4CI ACNGT 2 cut(s) 599, 1050
BstC8I GCNNGC 4 cut(s) 190, 229, 509, 1072
BstDEI CTNAG 2 cut(s) 144, 502
BstF5I GGATG 3 cut(s) 30, 318, 865
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 3 cut(s) 220, 391, 457
BstMAI GTCTC 2 cut(s) 246, 263
BstMBI GATC 3 cut(s) 217, 388, 454
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 652
BstSFI CTRYAG 3 cut(s) 193, 533, 994
BstV1I GCAGC 1 cut(s) 179
BstV2I GAAGAC 2 cut(s) 342, 1026
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
Bsu36I CCTNAGG 1 cut(s) 502
BsuI GTATCC 1 cut(s) 1001
BsuRI GGCC 1 cut(s) 129
BtsCI GGATG 3 cut(s) 30, 318, 865
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 2 cut(s) 58, 1046
Cac8I GCNNGC 4 cut(s) 190, 229, 509, 1072
CciI TCATGA 1 cut(s) 711
CfoI GCGC 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 873
CseI GACGC 1 cut(s) 474
Csp6I GTAC 3 cut(s) 595, 799, 808
CviAII CATG 5 cut(s) 232, 256, 508, 712, 789
CviQI GTAC 3 cut(s) 595, 799, 808
DdeI CTNAG 2 cut(s) 144, 502
DpnI GATC 3 cut(s) 219, 390, 456
DpnII GATC 3 cut(s) 217, 388, 454
DraI TTTAAA 1 cut(s) 480
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 821
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 873
Eco47III AGCGCT 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 750
Eco81I CCTNAGG 1 cut(s) 502
Eco88I CYCGRG 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 873
EcoT14I CCWWGG 1 cut(s) 821
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 821
FaeI CATG 5 cut(s) 235, 259, 511, 715, 792
FaqI GGGAC 1 cut(s) 472
FatI CATG 5 cut(s) 231, 255, 507, 711, 788
FauI CCCGC 1 cut(s) 561
Fnu4HI GCNGC 1 cut(s) 193
FokI GGATG 3 cut(s) 37, 325, 872
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 193
FspBI CTAG 1 cut(s) 1071
GlaI GCGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 193
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 1 cut(s) 129
HapII CCGG 3 cut(s) 126, 189, 654
HgaI GACGC 1 cut(s) 474
HhaI GCGC 1 cut(s) 114
Hin1II CATG 5 cut(s) 235, 259, 511, 715, 792
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 753, 883
HinfI GANTC 5 cut(s) 271, 316, 691, 698, 784
HpaII CCGG 3 cut(s) 126, 189, 654
HphI GGTGA 2 cut(s) 40, 172
Hpy166II GTNNAC 2 cut(s) 172, 577
Hpy188I TCNGA 4 cut(s) 24, 278, 400, 741
Hpy188III TCNNGA 6 cut(s) 70, 208, 610, 695, 712, 1038
Hpy8I GTNNAC 2 cut(s) 172, 577
HpyAV CCTTC 5 cut(s) 295, 655, 659, 773, 886
HpyCH4III ACNGT 2 cut(s) 599, 1050
HpyCH4IV ACGT 1 cut(s) 987
HpyCH4V TGCA 8 cut(s) 51, 136, 195, 425, 511, 518, 587, 976
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpyF3I CTNAG 2 cut(s) 144, 502
HpySE526I ACGT 1 cut(s) 987
Hsp92II CATG 5 cut(s) 235, 259, 511, 715, 792
HspAI GCGC 1 cut(s) 112
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 3 cut(s) 217, 388, 454
LmnI GCTCC 1 cut(s) 844
Lsp1109I GCAGC 1 cut(s) 179
MaeI CTAG 1 cut(s) 1071
MaeII ACGT 1 cut(s) 987
MaeIII GTNAC 1 cut(s) 636
MalI GATC 3 cut(s) 219, 390, 456
MboI GATC 3 cut(s) 217, 388, 454
MboII GAAGA 8 cut(s) 68, 274, 342, 628, 700, 754, 902, 1026
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 3 cut(s) 150, 492, 849
MlyI GAGTC 1 cut(s) 265
MroNI GCCGGC 1 cut(s) 188
MseI TTAA 7 cut(s) 201, 431, 479, 804, 828, 939, 963
MslI CAYNNNNRTG 1 cut(s) 710
MspI CCGG 3 cut(s) 126, 189, 654
MspR9I CCNGG 1 cut(s) 654
MwoI GCNNNNNNNGC 1 cut(s) 111
NaeI GCCGGC 1 cut(s) 190
NciI CCSGG 1 cut(s) 654
NdeII GATC 3 cut(s) 217, 388, 454
NgoMIV GCCGGC 1 cut(s) 188
NheI GCTAGC 1 cut(s) 1070
NlaIII CATG 5 cut(s) 235, 259, 511, 715, 792
NmuCI GTSAC 1 cut(s) 636
NspI RCATGY 1 cut(s) 511
PaeI GCATGC 1 cut(s) 511
PaeR7I CTCGAG 1 cut(s) 367
PagI TCATGA 1 cut(s) 711
PdiI GCCGGC 1 cut(s) 190
PfeI GAWTC 4 cut(s) 316, 691, 698, 784
PkrI GCNGC 1 cut(s) 194
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 873
Psp124BI GAGCTC 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 873
PspPI GGNCC 1 cut(s) 873
PspPPI RGGWCCY 1 cut(s) 873
PspXI VCTCGAGB 1 cut(s) 367
PstI CTGCAG 1 cut(s) 197
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 3 cut(s) 596, 800, 809
RsaNI GTAC 3 cut(s) 595, 799, 808
RseI CAYNNNNRTG 1 cut(s) 710
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 7 cut(s) 201, 431, 479, 804, 828, 939, 963
SatI GCNGC 1 cut(s) 193
Sau3AI GATC 3 cut(s) 217, 388, 454
Sau96I GGNCC 1 cut(s) 873
ScaI AGTACT 1 cut(s) 596
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 1 cut(s) 69
SfcI CTRYAG 3 cut(s) 193, 533, 994
Sfr274I CTCGAG 1 cut(s) 367
SinI GGWCC 1 cut(s) 873
SlaI CTCGAG 1 cut(s) 367
SmiI ATTTAAAT 1 cut(s) 480
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 2 cut(s) 68, 367
SmoI CTYRAG 2 cut(s) 68, 367
SphI GCATGC 1 cut(s) 511
Sse9I AATT 3 cut(s) 150, 492, 849
SsiI CCGC 1 cut(s) 568
SspI AATATT 1 cut(s) 972
SspMI CTAG 1 cut(s) 1071
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 652
StyI CCWWGG 1 cut(s) 821
SwaI ATTTAAAT 1 cut(s) 480
TaaI ACNGT 2 cut(s) 599, 1050
TaiI ACGT 1 cut(s) 990
TaqI TCGA 2 cut(s) 368, 457
TasI AATT 3 cut(s) 150, 492, 849
TatI WGTACW 2 cut(s) 594, 798
TfiI GAWTC 4 cut(s) 316, 691, 698, 784
Tru1I TTAA 7 cut(s) 201, 431, 479, 804, 828, 939, 963
Tru9I TTAA 7 cut(s) 201, 431, 479, 804, 828, 939, 963
TscAI CASTG 2 cut(s) 58, 1053
TseFI GTSAC 1 cut(s) 636
TseI GCWGC 1 cut(s) 192
Tsp45I GTSAC 1 cut(s) 636
TspDTI ATGAA 9 cut(s) 17, 179, 248, 329, 480, 618, 700, 728, 893
TspRI CASTG 2 cut(s) 58, 1053
VpaK11BI GGWCC 1 cut(s) 873
XapI RAATTY 1 cut(s) 492
XceI RCATGY 1 cut(s) 511
XhoI CTCGAG 1 cut(s) 367
XspI CTAG 1 cut(s) 1071
ZrmI AGTACT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.