Prupe.4G059900_v2.0.a1

Uncharacterised protein family UPF0052

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
2852203 .. 2857311
5109 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G059900.1

Sequence Viewer

Length: 1392 bp
ATGGCGGACAGTTGGTTGGGCCCATGTCCCTCTCGCTCTCCCTCTCTGATTCTCACTCTCAGTTTCCCCCAATTTCCTTGGAGATCTCATTCCATGTCTACCCTTCGCTCCCAAAACCCTAAACATTTCCGTTGCTACTCCTTCTCCTCCATCCCTAACCCTAGCCCTGTCATGCCTTCCTTGCTCGTCTTTTCAGGTGGGACTGCGTTCAACGGCGTCGTTGAGGAGCTCAAGAATTTCACTACTCGCGTAGCTCACGTCCTTCCTGTTTCCGACGATGGAGGAAGTACGGCTGAGATTGTTCGTGTTCTCGGCGGTCCTGCTGTCGGAGATATACGGTCCAGATGTTTGAGATTGGCTGATAAGAGCTCTTCTGAGGCTGTGGCAGTCCGGAGATTGCTTGGTCACCGTTTACCTCTTGATTCGCGTCAAGCCAAATCTGAATGGTATGATATTGTGGAAGGAGAACATTCGCTATGGACGGGAGTATCAAAACCCTACAGGGAAACCATTCGGGCTTTTCTAGTTTATTTTCAGAATCAGATACTCCGGCGATCTGATGAATCATTTTGCTTCAGTAATGGCAGCATTGGGAATTTCTTCTTTGCAGGAGCACGCACATTTTTTCAGTCCTTAGATGCTGCAATATTTTTGTTTTCTCGTGTGTCAGATATCCCCTCAGAGAGTCTGGTCCTCCCAGTGATTTCTACTAACGACAGGCTTACATTAGGATGTGAATTATGGGATGGAACTATAATACGAGGCCAGAACGAAATTTCTCATCCAACCAAGGGATATATGGAACCTGTCAATAAGGAAAGCTCTTCATTTCCAGCACTTCCTTCGAGAATAAAGCGGGTATTCTACATGTCAAGTGAGGGCCAAAACTTGCTGCATGAGGTCTTCCCTGCTGCAAACCAATCTGTCTTGGATCAGTTACGTAATGTGGATTGCGTAGTTTATGCTATGGGATCCCTCTTTACTTCGATTTGCCCATCACTGGTATTAATTGGCATTGGGGAGATTATATCTTCAAGGTCCTGCCCCAAGGTGCTTTTGTTAAATGGTAGCCGTGACCGAGAGACAAGTGGCTTTTCAGCTTCTTGCTTTGTAACTGCTATCACAGATGCATTAAATCGAACATATGGAAATCCTCATAACTGTCTTGCAAACCTTCCCAGCCAATACATCAATACTGTATTAGTGCCCAAAGGTGGTGAGATTCCTATAGATGTTCAACACTTGGCTGCCCAAGGAATCTTTAATGTGATCGTTGTTGATTCTATACATGATCCAAAAGCTGGTGTAGTATTTGACCCGAAGTCGTTAATACAAGCCCTTGTTGACGTGATAGGCAGATACACGAGTACAAATCTTACAGCAGTAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

464

Amino Acids

50.76

Weight (kDa)

7.59

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1301
AccI GTMKAC 1 cut(s) 98
AccII CGCG 2 cut(s) 249, 427
AccIII TCCGGA 1 cut(s) 390
AciI CCGC 3 cut(s) 5, 315, 856
AclWI GGATC 4 cut(s) 939, 966, 979, 1286
AcsI RAATTY 3 cut(s) 235, 595, 774
AcuI CTGAAG 1 cut(s) 559
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 2 cut(s) 289, 1369
AfiI CCNNNNNNNGG 5 cut(s) 326, 791, 1000, 1214, 1301
AflIII ACRYGT 1 cut(s) 867
AgsI TTSAA 3 cut(s) 211, 1035, 1238
AhdI GACNNNNNGTC 1 cut(s) 1321
AjiI CACGTC 2 cut(s) 259, 1348
AluBI AGCT 6 cut(s) 229, 254, 369, 822, 1100, 1301
AluI AGCT 6 cut(s) 229, 254, 369, 822, 1100, 1301
Alw21I GWGCWC 3 cut(s) 231, 371, 616
Alw26I GTCTC 1 cut(s) 1076
AlwI GGATC 4 cut(s) 939, 966, 979, 1286
Aor13HI TCCGGA 1 cut(s) 390
AoxI GGCC 3 cut(s) 19, 763, 880
ApaI GGGCCC 1 cut(s) 23
ApeKI GCWGC 5 cut(s) 585, 641, 892, 911, 1247
ApoI RAATTY 3 cut(s) 235, 595, 774
AseI ATTAAT 1 cut(s) 1007
Asp700I GAANNNNTTC 2 cut(s) 510, 599
AspS9I GGNCC 7 cut(s) 19, 20, 317, 339, 691, 880, 1038
AsuHPI GGTGA 2 cut(s) 398, 1229
AvaII GGWCC 4 cut(s) 317, 339, 691, 1038
BaeGI GKGCMC 2 cut(s) 23, 1209
BaeI ACNNNNGTAYC 4 cut(s) 471, 504, 1351, 1384
BamHI GGATCC 1 cut(s) 971
BanII GRGCYC 3 cut(s) 23, 231, 371
BauI CACGAG 2 cut(s) 660, 1363
BbsI GAAGAC 1 cut(s) 895
Bbv12I GWGCWC 3 cut(s) 231, 371, 616
BbvI GCAGC 5 cut(s) 597, 628, 879, 898, 1234
BccI CCATC 4 cut(s) 158, 272, 740, 1003
BceAI ACGGC 3 cut(s) 229, 306, 1056
BcgI CGANNNNNNTGC 2 cut(s) 825, 859
BcoDI GTCTC 1 cut(s) 1076
BfaI CTAG 2 cut(s) 162, 524
BfmI CTRYAG 2 cut(s) 499, 1227
BglII AGATCT 1 cut(s) 83
BisI GCNGC 5 cut(s) 586, 642, 893, 912, 1248
BlsI GCNGC 5 cut(s) 587, 643, 894, 913, 1249
Bme18I GGWCC 4 cut(s) 317, 339, 691, 1038
BmeRI GACNNNNNGTC 1 cut(s) 1321
BmgBI CACGTC 2 cut(s) 259, 1348
BmgT120I GGNCC 7 cut(s) 19, 20, 317, 339, 691, 880, 1038
BmiI GGNNCC 3 cut(s) 21, 804, 973
BmrI ACTGGG 1 cut(s) 692
BmsI GCATC 2 cut(s) 628, 1117
BmuI ACTGGG 1 cut(s) 692
BpiI GAAGAC 1 cut(s) 895
BpuEI CTTGAG 1 cut(s) 215
BsaAI YACGTR 1 cut(s) 941
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 4 cut(s) 77, 789, 1047, 1252
BsaWI WCCGGW 1 cut(s) 390
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 5 cut(s) 326, 791, 1000, 1214, 1301
Bse1I ACTGG 2 cut(s) 698, 1005
BseAI TCCGGA 1 cut(s) 390
BseDI CCNNGG 4 cut(s) 77, 789, 1047, 1252
BseGI GGATG 4 cut(s) 150, 737, 751, 781
BseLI CCNNNNNNNGG 5 cut(s) 326, 791, 1000, 1214, 1301
BseMII CTCAG 4 cut(s) 73, 285, 366, 693
BseNI ACTGG 2 cut(s) 698, 1005
BseRI GAGGAG 2 cut(s) 136, 239
BseSI GKGCMC 2 cut(s) 23, 1209
BseXI GCAGC 5 cut(s) 597, 628, 879, 898, 1234
BseYI CCCAGC 1 cut(s) 1178
Bsh1236I CGCG 2 cut(s) 249, 427
BshFI GGCC 3 cut(s) 21, 765, 882
BsiHKAI GWGCWC 3 cut(s) 231, 371, 616
BsiSI CCGG 2 cut(s) 391, 550
BslFI GGGAC 2 cut(s) 12, 214
BslI CCNNNNNNNGG 5 cut(s) 326, 791, 1000, 1214, 1301
BsmAI GTCTC 1 cut(s) 1076
BsmFI GGGAC 2 cut(s) 12, 214
BsnI GGCC 3 cut(s) 21, 765, 882
Bsp120I GGGCCC 1 cut(s) 19
Bsp1286I GDGCHC 5 cut(s) 23, 231, 371, 616, 1209
Bsp13I TCCGGA 1 cut(s) 390
Bsp143I GATC 6 cut(s) 83, 554, 931, 971, 1269, 1291
BspACI CCGC 3 cut(s) 5, 315, 856
BspANI GGCC 3 cut(s) 21, 765, 882
BspCNI CTCAG 4 cut(s) 72, 286, 367, 692
BspEI TCCGGA 1 cut(s) 390
BspFNI CGCG 2 cut(s) 249, 427
BspLI GGNNCC 3 cut(s) 21, 804, 973
BspPI GGATC 4 cut(s) 939, 966, 979, 1286
BspQI GCTCTTC 2 cut(s) 376, 829
BsrI ACTGG 2 cut(s) 698, 1005
BssECI CCNNGG 4 cut(s) 77, 789, 1047, 1252
BssMI GATC 6 cut(s) 83, 554, 931, 971, 1269, 1291
BssNI GRCGYC 1 cut(s) 216
BssSI CACGAG 2 cut(s) 660, 1363
BssT1I CCWWGG 4 cut(s) 77, 789, 1047, 1252
Bst2BI CACGAG 2 cut(s) 660, 1363
Bst4CI ACNGT 5 cut(s) 11, 339, 410, 1163, 1198
Bst6I CTCTTC 2 cut(s) 376, 829
BstACI GRCGYC 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 941
BstC8I GCNNGC 1 cut(s) 616
BstDEI CTNAG 5 cut(s) 59, 294, 375, 634, 679
BstEII GGTNACC 1 cut(s) 404
BstF5I GGATG 4 cut(s) 150, 737, 751, 781
BstFNI CGCG 2 cut(s) 249, 427
BstKTI GATC 6 cut(s) 86, 557, 934, 974, 1272, 1294
BstMAI GTCTC 1 cut(s) 1076
BstMBI GATC 6 cut(s) 83, 554, 931, 971, 1269, 1291
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNSI RCATGY 1 cut(s) 871
BstPI GGTNACC 1 cut(s) 404
BstSFI CTRYAG 2 cut(s) 499, 1227
BstSLI GKGCMC 2 cut(s) 23, 1209
BstSNI TACGTA 1 cut(s) 941
BstUI CGCG 2 cut(s) 249, 427
BstV1I GCAGC 5 cut(s) 597, 628, 879, 898, 1234
BstV2I GAAGAC 1 cut(s) 895
BstX2I RGATCY 2 cut(s) 83, 971
BstYI RGATCY 2 cut(s) 83, 971
BsuRI GGCC 3 cut(s) 21, 765, 882
BtrI CACGTC 2 cut(s) 259, 1348
BtsCI GGATG 4 cut(s) 150, 737, 751, 781
BtsIMutI CAGTG 2 cut(s) 705, 998
Cac8I GCNNGC 1 cut(s) 616
Cfr13I GGNCC 7 cut(s) 19, 20, 317, 339, 691, 880, 1038
CseI GACGC 2 cut(s) 205, 416
Csp6I GTAC 2 cut(s) 288, 1368
CviAII CATG 6 cut(s) 24, 94, 172, 868, 896, 1289
CviQI GTAC 2 cut(s) 288, 1368
DdeI CTNAG 5 cut(s) 59, 294, 375, 634, 679
DpnI GATC 6 cut(s) 85, 556, 933, 973, 1271, 1293
DpnII GATC 6 cut(s) 83, 554, 931, 971, 1269, 1291
DriI GACNNNNNGTC 1 cut(s) 1321
Eam1104I CTCTTC 2 cut(s) 376, 829
Eam1105I GACNNNNNGTC 1 cut(s) 1321
EarI CTCTTC 2 cut(s) 376, 829
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 229, 369
Eco105I TACGTA 1 cut(s) 941
Eco130I CCWWGG 4 cut(s) 77, 789, 1047, 1252
Eco24I GRGCYC 3 cut(s) 23, 231, 371
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 4 cut(s) 317, 339, 691, 1038
Eco53kI GAGCTC 2 cut(s) 229, 369
Eco57I CTGAAG 1 cut(s) 559
Eco91I GGTNACC 1 cut(s) 404
EcoICRI GAGCTC 2 cut(s) 229, 369
EcoO109I RGGNCCY 1 cut(s) 1038
EcoO65I GGTNACC 1 cut(s) 404
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 4 cut(s) 77, 789, 1047, 1252
EcoT22I ATGCAT 1 cut(s) 1132
EcoT38I GRGCYC 3 cut(s) 23, 231, 371
ErhI CCWWGG 4 cut(s) 77, 789, 1047, 1252
FaeI CATG 6 cut(s) 27, 97, 175, 871, 899, 1292
FaqI GGGAC 2 cut(s) 12, 214
FatI CATG 6 cut(s) 23, 93, 171, 867, 895, 1288
FauI CCCGC 1 cut(s) 849
FauNDI CATATG 1 cut(s) 1144
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 5 cut(s) 586, 642, 893, 912, 1248
FokI GGATG 4 cut(s) 137, 744, 758, 768
FriOI GRGCYC 3 cut(s) 23, 231, 371
Fsp4HI GCNGC 5 cut(s) 586, 642, 893, 912, 1248
FspBI CTAG 2 cut(s) 162, 524
GluI GCNGC 5 cut(s) 586, 642, 893, 912, 1248
GsaI CCCAGC 1 cut(s) 1182
HaeIII GGCC 3 cut(s) 21, 765, 882
HapII CCGG 2 cut(s) 391, 550
HgaI GACGC 2 cut(s) 205, 416
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 6 cut(s) 27, 97, 175, 871, 899, 1292
HincII GTYRAC 1 cut(s) 1345
HindII GTYRAC 1 cut(s) 1345
HinfI GANTC 8 cut(s) 49, 422, 538, 563, 685, 1222, 1257, 1280
HpaII CCGG 2 cut(s) 391, 550
HphI GGTGA 2 cut(s) 398, 1229
Hpy166II GTNNAC 3 cut(s) 99, 413, 1345
Hpy188III TCNNGA 5 cut(s) 232, 342, 391, 419, 846
Hpy8I GTNNAC 3 cut(s) 99, 413, 1345
Hpy99I CGWCG 2 cut(s) 221, 278
HpyAV CCTTC 7 cut(s) 113, 151, 186, 272, 455, 852, 1184
HpyCH4III ACNGT 5 cut(s) 11, 339, 410, 1163, 1198
HpyCH4IV ACGT 3 cut(s) 258, 940, 1347
HpyCH4V TGCA 6 cut(s) 608, 644, 895, 914, 1130, 1169
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 5 cut(s) 59, 294, 375, 634, 679
HpySE526I ACGT 3 cut(s) 258, 940, 1347
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 6 cut(s) 27, 97, 175, 871, 899, 1292
Kpn2I TCCGGA 1 cut(s) 390
Kzo9I GATC 6 cut(s) 83, 554, 931, 971, 1269, 1291
LguI GCTCTTC 2 cut(s) 376, 829
LmnI GCTCC 3 cut(s) 113, 226, 611
Lsp1109I GCAGC 5 cut(s) 597, 628, 879, 898, 1234
LweI GCATC 2 cut(s) 628, 1117
MaeI CTAG 2 cut(s) 162, 524
MaeII ACGT 3 cut(s) 258, 940, 1347
MaeIII GTNAC 4 cut(s) 404, 936, 1073, 1111
MalI GATC 6 cut(s) 85, 556, 933, 973, 1271, 1293
MboI GATC 6 cut(s) 83, 554, 931, 971, 1269, 1291
MboII GAAGA 5 cut(s) 363, 592, 816, 895, 1023
MflI RGATCY 2 cut(s) 83, 971
MhlI GDGCHC 5 cut(s) 23, 231, 371, 616, 1209
MluCI AATT 6 cut(s) 71, 235, 595, 737, 774, 1008
MlyI GAGTC 1 cut(s) 694
MmeI TCCRAC 3 cut(s) 297, 307, 809
Mph1103I ATGCAT 1 cut(s) 1132
MroI TCCGGA 1 cut(s) 390
MroXI GAANNNNTTC 2 cut(s) 510, 599
MseI TTAA 5 cut(s) 1007, 1061, 1133, 1263, 1328
MslI CAYNNNNRTG 1 cut(s) 730
MspI CCGG 2 cut(s) 391, 550
MvnI CGCG 2 cut(s) 249, 427
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeI CATATG 1 cut(s) 1144
NdeII GATC 6 cut(s) 83, 554, 931, 971, 1269, 1291
NlaIII CATG 6 cut(s) 27, 97, 175, 871, 899, 1292
NlaIV GGNNCC 3 cut(s) 21, 804, 973
NmeAIII GCCGAG 1 cut(s) 291
NmuCI GTSAC 2 cut(s) 404, 1073
NsiI ATGCAT 1 cut(s) 1132
NspI RCATGY 1 cut(s) 871
PciI ACATGT 1 cut(s) 867
PciSI GCTCTTC 2 cut(s) 376, 829
PdmI GAANNNNTTC 2 cut(s) 510, 599
PfeI GAWTC 7 cut(s) 49, 422, 538, 563, 1222, 1257, 1280
PflMI CCANNNNNTGG 1 cut(s) 1301
PkrI GCNGC 5 cut(s) 587, 643, 894, 913, 1249
PleI GAGTC 1 cut(s) 693
PpsI GAGTC 1 cut(s) 693
Ppu21I YACGTR 1 cut(s) 941
PpuMI RGGWCCY 1 cut(s) 1038
PscI ACATGT 1 cut(s) 867
PshBI ATTAAT 1 cut(s) 1007
Psp124BI GAGCTC 2 cut(s) 231, 371
Psp5II RGGWCCY 1 cut(s) 1038
PspEI GGTNACC 1 cut(s) 404
PspFI CCCAGC 1 cut(s) 1178
PspN4I GGNNCC 3 cut(s) 21, 804, 973
PspOMI GGGCCC 1 cut(s) 19
PspPI GGNCC 7 cut(s) 19, 20, 317, 339, 691, 880, 1038
PspPPI RGGWCCY 1 cut(s) 1038
PsuI RGATCY 2 cut(s) 83, 971
RsaI GTAC 2 cut(s) 289, 1369
RsaNI GTAC 2 cut(s) 288, 1368
RseI CAYNNNNRTG 1 cut(s) 730
SacI GAGCTC 2 cut(s) 231, 371
SapI GCTCTTC 2 cut(s) 376, 829
SaqAI TTAA 5 cut(s) 1007, 1061, 1133, 1263, 1328
SatI GCNGC 5 cut(s) 586, 642, 893, 912, 1248
Sau3AI GATC 6 cut(s) 83, 554, 931, 971, 1269, 1291
Sau96I GGNCC 7 cut(s) 19, 20, 317, 339, 691, 880, 1038
SchI GAGTC 1 cut(s) 694
SduI GDGCHC 5 cut(s) 23, 231, 371, 616, 1209
SfaNI GCATC 2 cut(s) 628, 1117
SfcI CTRYAG 2 cut(s) 499, 1227
SinI GGWCC 4 cut(s) 317, 339, 691, 1038
SmiMI CAYNNNNRTG 1 cut(s) 730
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SnaBI TACGTA 1 cut(s) 941
Sse9I AATT 6 cut(s) 71, 235, 595, 737, 774, 1008
SsiI CCGC 3 cut(s) 5, 315, 856
SspI AATATT 1 cut(s) 648
SspMI CTAG 2 cut(s) 162, 524
SstI GAGCTC 2 cut(s) 231, 371
StyI CCWWGG 4 cut(s) 77, 789, 1047, 1252
TaaI ACNGT 5 cut(s) 11, 339, 410, 1163, 1198
TaiI ACGT 3 cut(s) 261, 943, 1350
TaqI TCGA 3 cut(s) 845, 986, 1138
TaqII GACCGA 1 cut(s) 1092
TasI AATT 6 cut(s) 71, 235, 595, 737, 774, 1008
TatI WGTACW 1 cut(s) 1367
TfiI GAWTC 7 cut(s) 49, 422, 538, 563, 1222, 1257, 1280
Tru1I TTAA 5 cut(s) 1007, 1061, 1133, 1263, 1328
Tru9I TTAA 5 cut(s) 1007, 1061, 1133, 1263, 1328
TscAI CASTG 2 cut(s) 705, 1005
TseFI GTSAC 2 cut(s) 404, 1073
TseI GCWGC 5 cut(s) 585, 641, 892, 911, 1247
Tsp45I GTSAC 2 cut(s) 404, 1073
TspDTI ATGAA 2 cut(s) 576, 816
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 2 cut(s) 705, 1005
Van91I CCANNNNNTGG 1 cut(s) 1301
VpaK11BI GGWCC 4 cut(s) 317, 339, 691, 1038
VspI ATTAAT 1 cut(s) 1007
XapI RAATTY 3 cut(s) 235, 595, 774
XceI RCATGY 1 cut(s) 871
XcmI CCANNNNNNNNNTGG 1 cut(s) 796
XmiI GTMKAC 1 cut(s) 98
XmnI GAANNNNTTC 2 cut(s) 510, 599
XspI CTAG 2 cut(s) 162, 524
Zsp2I ATGCAT 1 cut(s) 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.