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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G34780 AT2G34780 AT2G34780 AT2G34780 |
| fragaria_vesca | FvH4_3g10781 FvH4_3g10781 |
| malus_domestica | MD05G1268800.v1.1 MD10G1247500.v1.1 |
| prunus_persica | Prupe.4G095800_v2.0.a1 |
| pyrus_communis | pycom05g25180 pycom10g20530 |
| rosa_chinensis | RchiOBHm_Chr5g0017511 |
| rosa_laevigata | RLG00000032295 |
| rosa_multiflora | Rmu_sc0008764.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00059920 |
| rosa_rugosa | Rorug05G0036700 |
| rosa_samantha | Rh5AG130800 Rh5BG128700 Rh5CG141000 Rh5DG130900 |
| rosa_wichuraiana | Rw5G011280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1883 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 960, 1180 |
| AccBSI | CCGCTC | 1 cut(s) | 295 |
| AccI | GTMKAC | 1 cut(s) | 2521 |
| AciI | CCGC | 5 cut(s) | 295, 870, 1974, 2827, 2966 |
| AclWI | GGATC | 3 cut(s) | 345, 387, 3417 |
| AcoI | YGGCCR | 1 cut(s) | 2946 |
| AfaI | GTAC | 8 cut(s) | 71, 973, 1309, 1504, 2034, 2977, 3035, 3184 |
| AfeI | AGCGCT | 1 cut(s) | 2956 |
| AflII | CTTAAG | 2 cut(s) | 386, 3509 |
| AflIII | ACRYGT | 2 cut(s) | 2096, 2858 |
| AhlI | ACTAGT | 2 cut(s) | 656, 3482 |
| AjiI | CACGTC | 1 cut(s) | 2125 |
| AjnI | CCWGG | 5 cut(s) | 1104, 2071, 2607, 3211, 3404 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 218, 250 |
| Alw21I | GWGCWC | 2 cut(s) | 846, 3710 |
| AlwI | GGATC | 3 cut(s) | 345, 387, 3417 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1600 |
| Ama87I | CYCGRG | 1 cut(s) | 164 |
| Aor51HI | AGCGCT | 1 cut(s) | 2956 |
| AoxI | GGCC | 7 cut(s) | 1315, 1919, 2604, 2616, 2946, 3371, 3675 |
| ApeKI | GCWGC | 8 cut(s) | 48, 706, 2153, 2318, 2641, 2824, 3724, 3727 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1197, 2008, 2229, 3285 |
| AspLEI | GCGC | 3 cut(s) | 1006, 1574, 2957 |
| AspS9I | GGNCC | 5 cut(s) | 778, 1945, 2605, 2616, 2809 |
| AsuC2I | CCSGG | 1 cut(s) | 3774 |
| AsuHPI | GGTGA | 4 cut(s) | 1391, 1856, 2878, 3826 |
| AsuII | TTCGAA | 1 cut(s) | 1201 |
| AsuNHI | GCTAGC | 1 cut(s) | 28 |
| AvaI | CYCGRG | 1 cut(s) | 164 |
| AvaII | GGWCC | 3 cut(s) | 778, 1945, 2809 |
| AxyI | CCTNAGG | 1 cut(s) | 2250 |
| BaeGI | GKGCMC | 1 cut(s) | 1886 |
| BanI | GGYRCC | 1 cut(s) | 1883 |
| BanII | GRGCYC | 2 cut(s) | 846, 3710 |
| BbsI | GAAGAC | 8 cut(s) | 566, 734, 2481, 2568, 2792, 3237, 3365, 3725 |
| Bbv12I | GWGCWC | 2 cut(s) | 846, 3710 |
| BbvI | GCAGC | 8 cut(s) | 35, 718, 2140, 2305, 2628, 2836, 3711, 3739 |
| BccI | CCATC | 5 cut(s) | 178, 1073, 1583, 1873, 2209 |
| BceAI | ACGGC | 1 cut(s) | 3483 |
| BciT130I | CCWGG | 5 cut(s) | 1106, 2073, 2609, 3213, 3406 |
| BclI | TGATCA | 1 cut(s) | 2935 |
| BcnI | CCSGG | 1 cut(s) | 3774 |
| BcuI | ACTAGT | 2 cut(s) | 656, 3482 |
| BfmI | CTRYAG | 6 cut(s) | 132, 1329, 2157, 2522, 3653, 3725 |
| BfoI | RGCGCY | 1 cut(s) | 2958 |
| BfrI | CTTAAG | 2 cut(s) | 386, 3509 |
| BglII | AGATCT | 1 cut(s) | 1701 |
| BisI | GCNGC | 9 cut(s) | 49, 707, 2154, 2319, 2642, 2825, 2967, 3725, 3728 |
| BlsI | GCNGC | 9 cut(s) | 50, 708, 2155, 2320, 2643, 2826, 2968, 3726, 3729 |
| Bme1390I | CCNGG | 6 cut(s) | 1106, 2073, 2609, 3213, 3406, 3774 |
| Bme18I | GGWCC | 3 cut(s) | 778, 1945, 2809 |
| BmeT110I | CYCGRG | 1 cut(s) | 164 |
| BmgBI | CACGTC | 1 cut(s) | 2125 |
| BmgT120I | GGNCC | 5 cut(s) | 778, 1945, 2605, 2616, 2809 |
| BmiI | GGNNCC | 6 cut(s) | 299, 779, 929, 1885, 1947, 1969 |
| BmrFI | CCNGG | 6 cut(s) | 1106, 2073, 2609, 3213, 3406, 3774 |
| BmrI | ACTGGG | 2 cut(s) | 1920, 2685 |
| BmtI | GCTAGC | 1 cut(s) | 32 |
| BmuI | ACTGGG | 2 cut(s) | 1920, 2685 |
| BpiI | GAAGAC | 8 cut(s) | 566, 734, 2481, 2568, 2792, 3237, 3365, 3725 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1481, 1513, 1610, 1642, 3035, 3067 |
| BpmI | CTGGAG | 9 cut(s) | 107, 311, 1262, 1551, 1578, 2055, 2781, 3114, 3275 |
| Bpu10I | CCTNAGC | 2 cut(s) | 24, 1420 |
| Bpu14I | TTCGAA | 1 cut(s) | 1201 |
| BpuEI | CTTGAG | 6 cut(s) | 710, 731, 830, 953, 2066, 3649 |
| BpuMI | CCSGG | 1 cut(s) | 3774 |
| BsaAI | YACGTR | 3 cut(s) | 2097, 2342, 2735 |
| BsaBI | GATNNNNATC | 1 cut(s) | 612 |
| BsaI | GGTCTC | 2 cut(s) | 1095, 2339 |
| BsaJI | CCNNGG | 7 cut(s) | 954, 1318, 1941, 2607, 2655, 3211, 3405 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 31, 2889, 2919 |
| Bse118I | RCCGGY | 2 cut(s) | 3373, 3677 |
| Bse21I | CCTNAGG | 1 cut(s) | 2250 |
| Bse3DI | GCAATG | 2 cut(s) | 3087, 3527 |
| Bse8I | GATNNNNATC | 1 cut(s) | 612 |
| BseBI | CCWGG | 5 cut(s) | 1106, 2073, 2609, 3213, 3406 |
| BseDI | CCNNGG | 7 cut(s) | 954, 1318, 1941, 2607, 2655, 3211, 3405 |
| BseGI | GGATG | 4 cut(s) | 1285, 1340, 2877, 3598 |
| BseJI | GATNNNNATC | 1 cut(s) | 612 |
| BseMI | GCAATG | 2 cut(s) | 3087, 3527 |
| BseRI | GAGGAG | 2 cut(s) | 1077, 1960 |
| BseSI | GKGCMC | 1 cut(s) | 1886 |
| BseXI | GCAGC | 8 cut(s) | 35, 718, 2140, 2305, 2628, 2836, 3711, 3739 |
| BseYI | CCCAGC | 2 cut(s) | 2084, 3517 |
| BsgI | GTGCAG | 4 cut(s) | 771, 2964, 3011, 3710 |
| BshFI | GGCC | 7 cut(s) | 1317, 1921, 2606, 2618, 2948, 3373, 3677 |
| BshNI | GGYRCC | 1 cut(s) | 1883 |
| BsiHKAI | GWGCWC | 2 cut(s) | 846, 3710 |
| BsiHKCI | CYCGRG | 1 cut(s) | 164 |
| BsiSI | CCGG | 4 cut(s) | 2949, 3374, 3678, 3773 |
| BslFI | GGGAC | 4 cut(s) | 791, 1807, 1931, 2221 |
| BsmBI | CGTCTC | 2 cut(s) | 3562, 3656 |
| BsmFI | GGGAC | 4 cut(s) | 791, 1807, 1931, 2221 |
| BsmI | GAATGC | 2 cut(s) | 1387, 3528 |
| BsnI | GGCC | 7 cut(s) | 1317, 1921, 2606, 2618, 2948, 3373, 3677 |
| Bso31I | GGTCTC | 2 cut(s) | 1095, 2339 |
| BsoBI | CYCGRG | 1 cut(s) | 164 |
| Bsp119I | TTCGAA | 1 cut(s) | 1201 |
| Bsp1286I | GDGCHC | 3 cut(s) | 846, 1886, 3710 |
| Bsp1407I | TGTACA | 1 cut(s) | 2032 |
| Bsp19I | CCATGG | 2 cut(s) | 954, 2655 |
| BspACI | CCGC | 5 cut(s) | 295, 870, 1974, 2827, 2966 |
| BspANI | GGCC | 7 cut(s) | 1317, 1921, 2606, 2618, 2948, 3373, 3677 |
| BspHI | TCATGA | 3 cut(s) | 1777, 2277, 3040 |
| BspLI | GGNNCC | 6 cut(s) | 299, 779, 929, 1885, 1947, 1969 |
| BspMAI | CTGCAG | 1 cut(s) | 3729 |
| BspOI | GCTAGC | 1 cut(s) | 32 |
| BspPI | GGATC | 3 cut(s) | 345, 387, 3417 |
| BspQI | GCTCTTC | 2 cut(s) | 834, 1215 |
| BspT104I | TTCGAA | 1 cut(s) | 1201 |
| BspT107I | GGYRCC | 1 cut(s) | 1883 |
| BspTI | CTTAAG | 2 cut(s) | 386, 3509 |
| BspTNI | GGTCTC | 2 cut(s) | 1095, 2339 |
| BsrBI | CCGCTC | 1 cut(s) | 295 |
| BsrDI | GCAATG | 2 cut(s) | 3087, 3527 |
| BsrFI | RCCGGY | 2 cut(s) | 3373, 3677 |
| BsrGI | TGTACA | 1 cut(s) | 2032 |
| BssAI | RCCGGY | 2 cut(s) | 3373, 3677 |
| BssECI | CCNNGG | 7 cut(s) | 954, 1318, 1941, 2607, 2655, 3211, 3405 |
| BssT1I | CCWWGG | 4 cut(s) | 954, 1318, 1941, 2655 |
| Bst2UI | CCWGG | 5 cut(s) | 1106, 2073, 2609, 3213, 3406 |
| Bst6I | CTCTTC | 7 cut(s) | 80, 123, 417, 834, 909, 1215, 1609 |
| BstAFI | CTTAAG | 2 cut(s) | 386, 3509 |
| BstAUI | TGTACA | 1 cut(s) | 2032 |
| BstBAI | YACGTR | 3 cut(s) | 2097, 2342, 2735 |
| BstBI | TTCGAA | 1 cut(s) | 1201 |
| BstC8I | GCNNGC | 8 cut(s) | 30, 792, 1315, 1417, 1437, 1441, 2565, 3375 |
| BstDSI | CCRYGG | 2 cut(s) | 954, 2655 |
| BstEII | GGTNACC | 1 cut(s) | 3814 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1109, 1322, 1530 |
| BstF5I | GGATG | 4 cut(s) | 1285, 1340, 2877, 3598 |
| BstH2I | RGCGCY | 1 cut(s) | 2958 |
| BstHHI | GCGC | 3 cut(s) | 1006, 1574, 2957 |
| BstNI | CCWGG | 5 cut(s) | 1106, 2073, 2609, 3213, 3406 |
| BstNSI | RCATGY | 3 cut(s) | 437, 2335, 2862 |
| BstPI | GGTNACC | 1 cut(s) | 3814 |
| BstSCI | CCNGG | 6 cut(s) | 1104, 2071, 2607, 3211, 3404, 3772 |
| BstSFI | CTRYAG | 6 cut(s) | 132, 1329, 2157, 2522, 3653, 3725 |
| BstSLI | GKGCMC | 1 cut(s) | 1886 |
| BstV1I | GCAGC | 8 cut(s) | 35, 718, 2140, 2305, 2628, 2836, 3711, 3739 |
| BstV2I | GAAGAC | 8 cut(s) | 566, 734, 2481, 2568, 2792, 3237, 3365, 3725 |
| BstX2I | RGATCY | 2 cut(s) | 379, 1701 |
| BstYI | RGATCY | 2 cut(s) | 379, 1701 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2250 |
| BsuRI | GGCC | 7 cut(s) | 1317, 1921, 2606, 2618, 2948, 3373, 3677 |
| BtgI | CCRYGG | 2 cut(s) | 954, 2655 |
| BtrI | CACGTC | 1 cut(s) | 2125 |
| BtsCI | GGATG | 4 cut(s) | 1285, 1340, 2877, 3598 |
| BtsI | GCAGTG | 4 cut(s) | 2565, 3144, 3503, 3693 |
| Cac8I | GCNNGC | 8 cut(s) | 30, 792, 1315, 1417, 1437, 1441, 2565, 3375 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1600 |
| CciI | TCATGA | 3 cut(s) | 1777, 2277, 3040 |
| CfoI | GCGC | 3 cut(s) | 1006, 1574, 2957 |
| Cfr10I | RCCGGY | 2 cut(s) | 3373, 3677 |
| Cfr13I | GGNCC | 5 cut(s) | 778, 1945, 2605, 2616, 2809 |
| CseI | GACGC | 3 cut(s) | 1360, 1403, 3730 |
| Csp6I | GTAC | 8 cut(s) | 70, 972, 1308, 1503, 2033, 2976, 3034, 3183 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2400, 2435 |
| CviQI | GTAC | 8 cut(s) | 70, 972, 1308, 1503, 2033, 2976, 3034, 3183 |
| DraI | TTTAAA | 1 cut(s) | 103 |
| EaeI | YGGCCR | 1 cut(s) | 2946 |
| Eam1104I | CTCTTC | 7 cut(s) | 80, 123, 417, 834, 909, 1215, 1609 |
| EarI | CTCTTC | 7 cut(s) | 80, 123, 417, 834, 909, 1215, 1609 |
| Ecl136II | GAGCTC | 2 cut(s) | 844, 3708 |
| Eco130I | CCWWGG | 4 cut(s) | 954, 1318, 1941, 2655 |
| Eco147I | AGGCCT | 1 cut(s) | 1921 |
| Eco24I | GRGCYC | 2 cut(s) | 846, 3710 |
| Eco31I | GGTCTC | 2 cut(s) | 1095, 2339 |
| Eco47I | GGWCC | 3 cut(s) | 778, 1945, 2809 |
| Eco47III | AGCGCT | 1 cut(s) | 2956 |
| Eco53kI | GAGCTC | 2 cut(s) | 844, 3708 |
| Eco81I | CCTNAGG | 1 cut(s) | 2250 |
| Eco88I | CYCGRG | 1 cut(s) | 164 |
| Eco91I | GGTNACC | 1 cut(s) | 3814 |
| EcoICRI | GAGCTC | 2 cut(s) | 844, 3708 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1109, 1322, 1530 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2616, 2809 |
| EcoO65I | GGTNACC | 1 cut(s) | 3814 |
| EcoRI | GAATTC | 1 cut(s) | 2038 |
| EcoRII | CCWGG | 5 cut(s) | 1104, 2071, 2607, 3211, 3404 |
| EcoT14I | CCWWGG | 4 cut(s) | 954, 1318, 1941, 2655 |
| EcoT38I | GRGCYC | 2 cut(s) | 846, 3710 |
| ErhI | CCWWGG | 4 cut(s) | 954, 1318, 1941, 2655 |
| Esp3I | CGTCTC | 2 cut(s) | 3562, 3656 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1996, 2028, 2583, 2615, 2778, 2810 |
| FaqI | GGGAC | 4 cut(s) | 791, 1807, 1931, 2221 |
| FauI | CCCGC | 1 cut(s) | 2820 |
| FbaI | TGATCA | 1 cut(s) | 2935 |
| FblI | GTMKAC | 1 cut(s) | 2521 |
| Fnu4HI | GCNGC | 9 cut(s) | 49, 707, 2154, 2319, 2642, 2825, 2967, 3725, 3728 |
| FokI | GGATG | 4 cut(s) | 1292, 1347, 2864, 3605 |
| FriOI | GRGCYC | 2 cut(s) | 846, 3710 |
| Fsp4HI | GCNGC | 9 cut(s) | 49, 707, 2154, 2319, 2642, 2825, 2967, 3725, 3728 |
| GlaI | GCGC | 3 cut(s) | 1005, 1573, 2956 |
| GluI | GCNGC | 9 cut(s) | 49, 707, 2154, 2319, 2642, 2825, 2967, 3725, 3728 |
| GsaI | CCCAGC | 2 cut(s) | 2088, 3521 |
| GsuI | CTGGAG | 9 cut(s) | 107, 311, 1262, 1551, 1578, 2055, 2781, 3114, 3275 |
| HaeII | RGCGCY | 1 cut(s) | 2958 |
| HaeIII | GGCC | 7 cut(s) | 1317, 1921, 2606, 2618, 2948, 3373, 3677 |
| HapII | CCGG | 4 cut(s) | 2949, 3374, 3678, 3773 |
| HgaI | GACGC | 3 cut(s) | 1360, 1403, 3730 |
| HhaI | GCGC | 3 cut(s) | 1006, 1574, 2957 |
| Hin6I | GCGC | 3 cut(s) | 1004, 1572, 2955 |
| HinP1I | GCGC | 3 cut(s) | 1004, 1572, 2955 |
| HincII | GTYRAC | 1 cut(s) | 2917 |
| HindII | GTYRAC | 1 cut(s) | 2917 |
| HindIII | AAGCTT | 5 cut(s) | 326, 342, 3009, 3322, 3790 |
| HpaII | CCGG | 4 cut(s) | 2949, 3374, 3678, 3773 |
| HphI | GGTGA | 4 cut(s) | 1391, 1856, 2878, 3826 |
| Hpy166II | GTNNAC | 3 cut(s) | 2522, 2662, 2917 |
| Hpy8I | GTNNAC | 3 cut(s) | 2522, 2662, 2917 |
| Hpy99I | CGWCG | 1 cut(s) | 10 |
| HpyAV | CCTTC | 9 cut(s) | 101, 121, 1013, 1197, 1298, 1932, 1998, 3572, 3608 |
| HpyCH4IV | ACGT | 7 cut(s) | 748, 1299, 2096, 2124, 2341, 2734, 3075 |
| HpySE526I | ACGT | 7 cut(s) | 748, 1299, 2096, 2124, 2341, 2734, 3075 |
| HspAI | GCGC | 3 cut(s) | 1004, 1572, 2955 |
| KroI | GCCGGC | 1 cut(s) | 3373 |
| KroNI | GCCGGC | 1 cut(s) | 3375 |
| Ksp22I | TGATCA | 1 cut(s) | 2935 |
| LguI | GCTCTTC | 2 cut(s) | 834, 1215 |
| LmnI | GCTCC | 9 cut(s) | 22, 292, 933, 1432, 1698, 1973, 3448, 3505, 3713 |
| Lsp1109I | GCAGC | 8 cut(s) | 35, 718, 2140, 2305, 2628, 2836, 3711, 3739 |
| MaeII | ACGT | 7 cut(s) | 748, 1299, 2096, 2124, 2341, 2734, 3075 |
| MaeIII | GTNAC | 9 cut(s) | 112, 993, 1596, 1630, 2395, 2539, 2884, 3428, 3814 |
| MbiI | CCGCTC | 1 cut(s) | 295 |
| MfeI | CAATTG | 5 cut(s) | 1514, 1977, 2515, 2939, 3132 |
| MflI | RGATCY | 2 cut(s) | 379, 1701 |
| MhlI | GDGCHC | 3 cut(s) | 846, 1886, 3710 |
| MlyI | GAGTC | 7 cut(s) | 575, 979, 1066, 1499, 1529, 2062, 3311 |
| MmeI | TCCRAC | 3 cut(s) | 606, 1696, 2163 |
| MroNI | GCCGGC | 1 cut(s) | 3373 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1197, 2008, 2229, 3285 |
| MslI | CAYNNNNRTG | 3 cut(s) | 77, 2733, 3155 |
| MspA1I | CMGCKG | 3 cut(s) | 1313, 2827, 3730 |
| MspCI | CTTAAG | 2 cut(s) | 386, 3509 |
| MspI | CCGG | 4 cut(s) | 2949, 3374, 3678, 3773 |
| MspR9I | CCNGG | 6 cut(s) | 1106, 2073, 2609, 3213, 3406, 3774 |
| MunI | CAATTG | 5 cut(s) | 1514, 1977, 2515, 2939, 3132 |
| Mva1269I | GAATGC | 2 cut(s) | 1387, 3528 |
| MvaI | CCWGG | 5 cut(s) | 1106, 2073, 2609, 3213, 3406 |
| NaeI | GCCGGC | 1 cut(s) | 3375 |
| NciI | CCSGG | 1 cut(s) | 3774 |
| NcoI | CCATGG | 2 cut(s) | 954, 2655 |
| NgoMIV | GCCGGC | 1 cut(s) | 3373 |
| NheI | GCTAGC | 1 cut(s) | 28 |
| NlaIV | GGNNCC | 6 cut(s) | 299, 779, 929, 1885, 1947, 1969 |
| NmuCI | GTSAC | 4 cut(s) | 2395, 2884, 3428, 3814 |
| NspI | RCATGY | 3 cut(s) | 437, 2335, 2862 |
| NspV | TTCGAA | 1 cut(s) | 1201 |
| PaeR7I | CTCGAG | 1 cut(s) | 164 |
| PagI | TCATGA | 3 cut(s) | 1777, 2277, 3040 |
| PceI | AGGCCT | 1 cut(s) | 1921 |
| PciI | ACATGT | 1 cut(s) | 2858 |
| PciSI | GCTCTTC | 2 cut(s) | 834, 1215 |
| PctI | GAATGC | 2 cut(s) | 1387, 3528 |
| PdiI | GCCGGC | 1 cut(s) | 3375 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1197, 2008, 2229, 3285 |
| PflFI | GACNNNGTC | 1 cut(s) | 565 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 960, 1180 |
| PkrI | GCNGC | 9 cut(s) | 50, 708, 2155, 2320, 2643, 2826, 2968, 3726, 3729 |
| PleI | GAGTC | 7 cut(s) | 574, 979, 1066, 1498, 1528, 2062, 3310 |
| PpsI | GAGTC | 7 cut(s) | 574, 979, 1066, 1498, 1528, 2062, 3310 |
| Ppu21I | YACGTR | 3 cut(s) | 2097, 2342, 2735 |
| PpuMI | RGGWCCY | 1 cut(s) | 2809 |
| PscI | ACATGT | 1 cut(s) | 2858 |
| Psp124BI | GAGCTC | 2 cut(s) | 846, 3710 |
| Psp5II | RGGWCCY | 1 cut(s) | 2809 |
| Psp6I | CCWGG | 5 cut(s) | 1104, 2071, 2607, 3211, 3404 |
| PspEI | GGTNACC | 1 cut(s) | 3814 |
| PspFI | CCCAGC | 2 cut(s) | 2084, 3517 |
| PspGI | CCWGG | 5 cut(s) | 1104, 2071, 2607, 3211, 3404 |
| PspN4I | GGNNCC | 6 cut(s) | 299, 779, 929, 1885, 1947, 1969 |
| PspPI | GGNCC | 5 cut(s) | 778, 1945, 2605, 2616, 2809 |
| PspPPI | RGGWCCY | 1 cut(s) | 2809 |
| PstI | CTGCAG | 1 cut(s) | 3729 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1600 |
| PsuI | RGATCY | 2 cut(s) | 379, 1701 |
| PsyI | GACNNNGTC | 1 cut(s) | 565 |
| PvuII | CAGCTG | 2 cut(s) | 1313, 3730 |
| RsaI | GTAC | 8 cut(s) | 71, 973, 1309, 1504, 2034, 2977, 3035, 3184 |
| RsaNI | GTAC | 8 cut(s) | 70, 972, 1308, 1503, 2033, 2976, 3034, 3183 |
| RseI | CAYNNNNRTG | 3 cut(s) | 77, 2733, 3155 |
| SacI | GAGCTC | 2 cut(s) | 846, 3710 |
| SapI | GCTCTTC | 2 cut(s) | 834, 1215 |
| SatI | GCNGC | 9 cut(s) | 49, 707, 2154, 2319, 2642, 2825, 2967, 3725, 3728 |
| Sau96I | GGNCC | 5 cut(s) | 778, 1945, 2605, 2616, 2809 |
| SchI | GAGTC | 7 cut(s) | 575, 979, 1066, 1499, 1529, 2062, 3311 |
| ScrFI | CCNGG | 6 cut(s) | 1106, 2073, 2609, 3213, 3406, 3774 |
| SduI | GDGCHC | 3 cut(s) | 846, 1886, 3710 |
| SfcI | CTRYAG | 6 cut(s) | 132, 1329, 2157, 2522, 3653, 3725 |
| Sfr274I | CTCGAG | 1 cut(s) | 164 |
| SfuI | TTCGAA | 1 cut(s) | 1201 |
| SinI | GGWCC | 3 cut(s) | 778, 1945, 2809 |
| SlaI | CTCGAG | 1 cut(s) | 164 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 77, 2733, 3155 |
| SmlI | CTYRAG | 9 cut(s) | 164, 386, 689, 710, 845, 932, 2045, 3509, 3628 |
| SmoI | CTYRAG | 9 cut(s) | 164, 386, 689, 710, 845, 932, 2045, 3509, 3628 |
| SpeI | ACTAGT | 2 cut(s) | 656, 3482 |
| SseBI | AGGCCT | 1 cut(s) | 1921 |
| SsiI | CCGC | 5 cut(s) | 295, 870, 1974, 2827, 2966 |
| SspI | AATATT | 1 cut(s) | 2470 |
| SstI | GAGCTC | 2 cut(s) | 846, 3710 |
| StuI | AGGCCT | 1 cut(s) | 1921 |
| StyD4I | CCNGG | 6 cut(s) | 1104, 2071, 2607, 3211, 3404, 3772 |
| StyI | CCWWGG | 4 cut(s) | 954, 1318, 1941, 2655 |
| TaiI | ACGT | 7 cut(s) | 751, 1302, 2099, 2127, 2344, 2737, 3078 |
| TaqI | TCGA | 5 cut(s) | 165, 352, 489, 1201, 3202 |
| TaqII | GACCGA | 1 cut(s) | 3377 |
| TatI | WGTACW | 4 cut(s) | 69, 2032, 2975, 3033 |
| TauI | GCSGC | 1 cut(s) | 2969 |
| TseFI | GTSAC | 4 cut(s) | 2395, 2884, 3428, 3814 |
| TseI | GCWGC | 8 cut(s) | 48, 706, 2153, 2318, 2641, 2824, 3724, 3727 |
| Tsp45I | GTSAC | 4 cut(s) | 2395, 2884, 3428, 3814 |
| TspGWI | ACGGA | 1 cut(s) | 210 |
| Tth111I | GACNNNGTC | 1 cut(s) | 565 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 960, 1180 |
| Vha464I | CTTAAG | 2 cut(s) | 386, 3509 |
| VpaK11BI | GGWCC | 3 cut(s) | 778, 1945, 2809 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1109, 1322, 1530 |
| XbaI | TCTAGA | 2 cut(s) | 1538, 3163 |
| XceI | RCATGY | 3 cut(s) | 437, 2335, 2862 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3794 |
| XhoI | CTCGAG | 1 cut(s) | 164 |
| XmiI | GTMKAC | 1 cut(s) | 2521 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1197, 2008, 2229, 3285 |