Rorug05G0036700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010060
Physical Location & Seq
Forward (+)
2649298 .. 2653872
4575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0036700.1

Sequence Viewer

Length: 3588 bp
ATGCTGGAGAAGATCGGGTTGCCGGCGAAGCCATCACTGAGAGGGAATAATTGGGTGGTTGACGCCTCACACTGTCAGGGATGTTCTTCTCAGTTCACCTTCATCAATCGCAAGCATCATTGCCGGAGGTGTGGGGGCATTTTCTGTGGCAGCTGTACACAGCAGAGGATGTTTTTGCGTGGGCAAGGCGATGCGCCTGTGCGGATATGTGAGCCTTGTAAGAAGCTAGAAGAAGCAGCGCGGTTCGAGAGATATGGACACAAGAGTAGAGCTGCGAGAGGCAGTTCAAATTTGACATCAAAGCCTGAGGATGAAATTTTGAACCAGATACTTGGTAATGAAGGGAAGGAATCAGGACAAGAGGTTAACAAGAATGTAGTTTCCAGTATGCTGAGGGCAACTAGTAGTGCATCATGTTCAAATAGTCGAGAAGATTCCAGCCATGATGCAGTGGGAGAAATACTTAGAAGTGTTTCTGTTGATAAGTTTAGTCAATTACAGAATGATAGTGAATCTGCTACTCCTGAGGAATTGCGTCAGCAAGCTTTGGATGAAAAAAAGAAGTATAAAATTCTGAAAGGAGAAGGGAAGTCTGCGGAAGCATTAAGAGCCTTTAAGAAAGGGAAGGAGCTTGAGAGGCAGGCTGATGCGTTGGAAATATCCTTAAGAAAAAAGCGTAAAAAGGATTTACTCTCTGACAATGTGGCTGAGGGCCAGATTAAAGATGACTCTTCCCAATCTGGAAGAAGAAACAGGGTCACTACTCCAGTGGGTAAAGAAAAAGATGACCTTTCAGCGGAGCTTAAAGAATTAGGGTGGTCTGATATGGATCTCCGTGACGAGAATAAAAAACAAGCGAGTCTGACTTTGGAGGGCGAGCTCTCTTCTCTTCTGGGAGAAATCTCACAAAAGAGCAATAAAAGTAAGGCTACTAGTGCCATTGACAAAACACAAGTTGTTGCACATAAAAAGAAGGCTCTCCAGCTGAAGCGTGAGGGCAAGCTTGCAGAAGCCAAGGAAGAATTAAAGAGAGCTAAAGTTCTAGAGAAGCAACTCGAAGAACAGGAATTGTTGGGTGAGGCTGAAGAGTCTGATGATGAAATATCTGCACTGATTCGTAGTATGGATGATGACAAAGAAGATTTTTCAATTCAATATGAGCAGGAGGATGGCCTTAATTTTGATAGTCTTATTAATGCTGCTGATGATCATATTATAGATAGTAATTTTGAAGTGACAGACGATGATATGGAGGACCCAGAAATAACTGCTGCCTTAAAATCTTTAGGATGGACTCAAGATTCAAATAATCCTCCTGAAACCTCTGCTACCCAGATAGCTTCAGTTGACAAGGAAGCACTATTAAGTGAAATTCAATTCTTAAAAAGAGAGGCTGTAACTCTTAAACGAGCAGGTAATGCCACAGAAGCAATGGCGCAGCTAAAGAAGGCAAAACTGCTTGAAAGGAACCTTGAAAGCATCGAGTCCCAAGAGGGCAATGTCGTGAAACCGTCTGCAACAGTTCATAATCGAACTATTGATAGATCATCAAAGTCATCTATGGTGGATGATGGAAATATTAGTGCAATGGAACATATTGACTTCAAACCTGCGAGGAAGAGTAAGTTAATGATTCAAAAAGAGCTTCTGGCTTTGAAGAAGAAGGCCCGTGCTCTGAGACAGGAGGGACGATTAGATGAAGCTGAAGAAGAGTTGAAGAGAGGCAGGGTTCTTGAGCATCAGCTTGAAGAGATGGAGAATGGTAAGGACTCAGTTTTGGAACACGAGCATGCCAATGTCTCTGGAAGTCTGTCTGTTGCGGATGAGGAAGGAGAGAATGTAACAGATCAAGATATGTATGATCCAACATATCTTTCCATGCTAAGGAATTTGGGTTGGAATGATGATAATGAAGTTGCAAACTCTTCATCAGCACCTGATAAGAAAACTGATAACATGCAGGCTAGTGAATCTTCTGTAGCACAAGCCCTAAGTGATTTCCCGGTTGGAGGATCAAGGAAAGGTAAATCTGAAATTCAGAAGGAACTATTAGGGTTGAAAAGAAAGGCTCTTGCTCTGAGGCGCCAGGGAGACACCGAGGAAGCAGAAGAAATGCTGAAAAAGGCAAAAGCATTAGAGGGTGAGATGGCGGAGATGGAAGCACCGAAGAAAGTTCAGTCGGACTTTGGTAAGGACAAGGACAATTTCATTGATCCTCTTCCTCTCAGTGTAGAGGAAGAAGGTGATGGCGGGGATGTAACAGAAAATGATGTGCAGGACCGAGCACTACTCTCAGTGCTAAAGAGTTTGGGGTGGGAGGATAAAGAGCATTCTGTAAAGGCATCTCCTCTGCAATCTTCTTCCAAACTTGCTGTTACTGCACCAAGAAGTAAGGGTGAAATCCAAAGGGAGCTTTTGGATTTGAAAAGAAAGGCTCATGCGTTTAGACGAAAGGGACAGACTGAAGAAGCTGAAGAAGTGTTGAAGATGGCAAAGGTACTAGAAGTTCAAATTGAAGAGTTGGAAGCCCCAAAGGGTTTACCAATGGAATTGGGTCCAGGTCGTCCAAACAACCAGAGAATTGCTCAAGGCGCTAGTCAGTCTTCACCTGCCCAGTCTGGGAACTTTGCAGATTTGTTGACGGGGGATGACTGGAGTGGTTCTCCAGGATCTGCTGAAAAACAATATGATAACCTATCTTGTTCTGTTGATTCTGTTAATGCCAGTCCTCCCATTCAGTTGAGATCCTCACAGGAAGATCTGAGAAAAAGAGATGATGCAATAATTAATAAACGGGAAGATACGATGGTAGCCAATGAGAAGCAAGATGCTAAAGAGGCAAATTTGGTTCTGGGATCTTCTCCACAGAAGAATGAAAGTGCCATTCGGCAAGAAATCGTGGCTTTTAAGAGGAGGGCATTAGCTCTAAAGAGAGAAGGAAAACTGACAGAAGCCCGCGAAGAACTTAGGCAGGCAAAAGTGTTGGAGAAGCGTCTTGAGGAAGACAGTCCTCAGTCCAAAACTAGTTCGAGTGATGTTTCCGGTTCTGCTAACAATGTTCCTCCAGCTGCCCAAAAGCAGCATGGATCACCGTCCTCGGGCCAAAAACCAATGTCCAGTCGTGATCGCTTCAAGTTGCAACAGGAGTCTCTAGGTCACAAACGTCAAGCCCTGAAGCTGCGAAGGGAGGGTCGGATTGAAGAAGCGGAAGCAGAGTTTGAATTGGCCAAGGCACTTGAGGCTCAATTAGAGGAAAGTGCTGCTCATGATTCCACTAGTGTAGCACCAGTGGATGATGCGGCCGTAGAGGGACTCCTTGATCCTGAACTTCTGTCTGCCTTAAGAGCAATTGGAATTGAAGATGCCAATACATCATCTCAAGGTCCCGGAAGACCAGAGCATTCAAAACCCAATGTTGGCAAGAGTGACAACGTAATCCAAGATAGAAGTAACCTGGAGGAACAGATCAAGGCAGAGAAGGTGAAGGCACTAAATCTGAAACGTGCAGGAAAACAAGCCGAGGCCTTAGATGCTCTTCGAAGGGCCAAGATGCTTGAAAAGAAGCTGAATTCCTCGGCTCCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1195

Amino Acids

131.89

Weight (kDa)

5.46

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FYVE PF01363 21 - 75 1.6e-16 FYVE zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010060)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34780 AT2G34780 AT2G34780 AT2G34780
fragaria_vesca FvH4_3g10781 FvH4_3g10781
malus_domestica MD05G1268800.v1.1 MD10G1247500.v1.1
prunus_persica Prupe.4G095800_v2.0.a1
pyrus_communis pycom05g25180 pycom10g20530
rosa_chinensis RchiOBHm_Chr5g0017511
rosa_laevigata RLG00000032295
rosa_multiflora Rmu_sc0008764.1_g000003
rosa_roxburghii Rroxscaffold_1G00059920
rosa_rugosa Rorug05G0036700
rosa_samantha Rh5AG130800 Rh5BG128700 Rh5CG141000 Rh5DG130900
rosa_wichuraiana Rw5G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2617
Acc36I ACCTGC 3 cut(s) 1403, 1618, 2617
AccB1I GGYRCC 1 cut(s) 2082
AccII CGCG 2 cut(s) 241, 2958
AclWI GGATC 9 cut(s) 837, 1856, 2020, 2207, 2677, 2739, 2863, 3094, 3314
AcoI YGGCCR 2 cut(s) 3225, 3300
AcsI RAATTY 8 cut(s) 289, 315, 570, 1371, 1888, 2034, 2842, 3568
AcuI CTGAAG 7 cut(s) 1007, 1104, 1326, 1725, 2484, 2493, 3194
AcyI GRCGYC 2 cut(s) 63, 2083
AfaI GTAC 2 cut(s) 157, 2499
AfiI CCNNNNNNNGG 6 cut(s) 796, 1884, 2009, 2619, 3098, 3416
AflII CTTAAG 2 cut(s) 664, 3340
AhlI ACTAGT 4 cut(s) 401, 932, 3023, 3275
AjnI CCWGG 4 cut(s) 2085, 2557, 2665, 3453
AjuI GAANNNNNNNTTGG 2 cut(s) 1858, 1890
Alw21I GWGCWC 3 cut(s) 882, 1675, 2287
Alw26I GTCTC 4 cut(s) 1672, 1804, 2085, 3153
AlwI GGATC 9 cut(s) 837, 1856, 2020, 2207, 2677, 2739, 2863, 3094, 3314
AlwNI CAGNNNCTG 2 cut(s) 1937, 2672
Ama87I CYCGRG 1 cut(s) 3097
AoxI GGCC 8 cut(s) 712, 1171, 1665, 3100, 3225, 3300, 3522, 3543
ApoI RAATTY 8 cut(s) 289, 315, 570, 1371, 1888, 2034, 2842, 3568
ArsI GACNNNNNNTTYG 2 cut(s) 3175, 3207
AseI ATTAAT 2 cut(s) 1194, 2787
Asp700I GAANNNNTTC 1 cut(s) 472
AspLEI GCGC 5 cut(s) 196, 241, 1438, 2085, 2594
AspS9I GGNCC 8 cut(s) 712, 1255, 1666, 2278, 2555, 3100, 3383, 3543
AsuC2I CCSGG 2 cut(s) 2003, 3387
AsuHPI GGTGA 8 cut(s) 88, 1088, 2153, 2255, 2408, 2598, 3081, 3493
AsuII TTCGAA 1 cut(s) 3538
AvaI CYCGRG 1 cut(s) 3097
AvaII GGWCC 4 cut(s) 1255, 2278, 2555, 3383
AxyI CCTNAGG 2 cut(s) 306, 525
BaeI ACNNNNGTAYC 2 cut(s) 2793, 2826
BalI TGGCCA 1 cut(s) 3227
BanI GGYRCC 1 cut(s) 2082
BanII GRGCYC 1 cut(s) 882
BauI CACGAG 1 cut(s) 1784
BbsI GAAGAC 3 cut(s) 2595, 3009, 3397
Bbv12I GWGCWC 3 cut(s) 882, 1675, 2287
BbvCI CCTCAGC 2 cut(s) 392, 708
BceAI ACGGC 1 cut(s) 3287
BciT130I CCWGG 4 cut(s) 2087, 2559, 2667, 3455
BclI TGATCA 1 cut(s) 1207
BcnI CCSGG 2 cut(s) 2003, 3387
BcoDI GTCTC 4 cut(s) 1672, 1804, 2085, 3153
BcuI ACTAGT 4 cut(s) 401, 932, 3023, 3275
BfmI CTRYAG 1 cut(s) 1977
BfoI RGCGCY 2 cut(s) 2086, 2595
BfrI CTTAAG 2 cut(s) 664, 3340
BfuAI ACCTGC 3 cut(s) 1403, 1618, 2617
BglII AGATCT 1 cut(s) 2758
Bme1390I CCNGG 6 cut(s) 2003, 2087, 2559, 2667, 3387, 3455
Bme18I GGWCC 4 cut(s) 1255, 2278, 2555, 3383
BmeT110I CYCGRG 1 cut(s) 3097
BmgT120I GGNCC 8 cut(s) 712, 1255, 1666, 2278, 2555, 3100, 3383, 3543
BmiI GGNNCC 6 cut(s) 1257, 1469, 2084, 2556, 3385, 3579
BmrFI CCNGG 6 cut(s) 2003, 2087, 2559, 2667, 3387, 3455
BmrI ACTGGG 1 cut(s) 2608
BmuI ACTGGG 1 cut(s) 2608
BpiI GAAGAC 3 cut(s) 2595, 3009, 3397
BplI GAGNNNNNCTC 6 cut(s) 2274, 2306, 2569, 2601, 2647, 2679
BpmI CTGGAG 7 cut(s) 26, 750, 965, 2649, 2674, 3048, 3476
Bpu10I CCTNAGC 3 cut(s) 392, 708, 1883
Bpu14I TTCGAA 1 cut(s) 3538
BpuEI CTTGAG 7 cut(s) 653, 1281, 1754, 2571, 3017, 3257, 3363
BpuMI CCSGG 2 cut(s) 2003, 3387
BsaBI GATNNNNATC 1 cut(s) 828
BsaHI GRCGYC 2 cut(s) 63, 2083
BsaJI CCNNGG 7 cut(s) 1014, 2086, 2097, 3096, 3228, 3519, 3573
BsaWI WCCGGW 1 cut(s) 3041
BsaXI ACNNNNNCTCC 2 cut(s) 1824, 1854
Bsc4I CCNNNNNNNGG 6 cut(s) 796, 1884, 2009, 2619, 3098, 3416
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 7 cut(s) 384, 767, 2614, 2657, 2724, 3117, 3287
Bse21I CCTNAGG 2 cut(s) 306, 525
Bse3DI GCAATG 4 cut(s) 118, 1437, 1504, 1593
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 4 cut(s) 2087, 2559, 2667, 3455
BseDI CCNNGG 7 cut(s) 1014, 2086, 2097, 3096, 3228, 3519, 3573
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 6 cut(s) 796, 1884, 2009, 2619, 3098, 3416
BseMI GCAATG 4 cut(s) 118, 1437, 1504, 1593
BseNI ACTGG 7 cut(s) 384, 767, 2614, 2657, 2724, 3117, 3287
BseRI GAGGAG 2 cut(s) 2337, 2926
BseX3I CGGCCG 1 cut(s) 3300
BsgI GTGCAG 4 cut(s) 1092, 2294, 2364, 3525
Bsh1236I CGCG 2 cut(s) 241, 2958
Bsh1285I CGRYCG 1 cut(s) 3303
BshFI GGCC 8 cut(s) 714, 1173, 1667, 3102, 3227, 3302, 3524, 3545
BshNI GGYRCC 1 cut(s) 2082
BsiEI CGRYCG 1 cut(s) 3303
BsiHKAI GWGCWC 3 cut(s) 882, 1675, 2287
BsiHKCI CYCGRG 1 cut(s) 3097
BsiSI CCGG 5 cut(s) 23, 124, 2003, 3042, 3387
BslFI GGGAC 5 cut(s) 1471, 1701, 2469, 3324, 3369
BslI CCNNNNNNNGG 6 cut(s) 796, 1884, 2009, 2619, 3098, 3416
BsmAI GTCTC 4 cut(s) 1672, 1804, 2085, 3153
BsmFI GGGAC 5 cut(s) 1471, 1701, 2469, 3324, 3369
BsmI GAATGC 2 cut(s) 2329, 3400
BsnI GGCC 8 cut(s) 714, 1173, 1667, 3102, 3227, 3302, 3524, 3545
BsoBI CYCGRG 1 cut(s) 3097
Bsp119I TTCGAA 1 cut(s) 3538
Bsp1286I GDGCHC 3 cut(s) 882, 1675, 2287
Bsp1407I TGTACA 1 cut(s) 155
BspANI GGCC 8 cut(s) 714, 1173, 1667, 3102, 3227, 3302, 3524, 3545
BspFNI CGCG 2 cut(s) 241, 2958
BspHI TCATGA 1 cut(s) 3265
BspLI GGNNCC 6 cut(s) 1257, 1469, 2084, 2556, 3385, 3579
BspMI ACCTGC 3 cut(s) 1403, 1618, 2617
BspPI GGATC 9 cut(s) 837, 1856, 2020, 2207, 2677, 2739, 2863, 3094, 3314
BspQI GCTCTTC 1 cut(s) 3540
BspT104I TTCGAA 1 cut(s) 3538
BspT107I GGYRCC 1 cut(s) 2082
BspTI CTTAAG 2 cut(s) 664, 3340
BsrDI GCAATG 4 cut(s) 118, 1437, 1504, 1593
BsrFI RCCGGY 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 155
BsrI ACTGG 7 cut(s) 384, 767, 2614, 2657, 2724, 3117, 3287
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 7 cut(s) 1014, 2086, 2097, 3096, 3228, 3519, 3573
BssNI GRCGYC 2 cut(s) 63, 2083
BssSI CACGAG 1 cut(s) 1784
BssT1I CCWWGG 2 cut(s) 1014, 3228
Bst2BI CACGAG 1 cut(s) 1784
Bst2UI CCWGG 4 cut(s) 2087, 2559, 2667, 3455
Bst4CI ACNGT 5 cut(s) 74, 1512, 1522, 3008, 3093
BstACI GRCGYC 2 cut(s) 63, 2083
BstAFI CTTAAG 2 cut(s) 664, 3340
BstAPI GCANNNNNTGC 1 cut(s) 1418
BstAUI TGTACA 1 cut(s) 155
BstBI TTCGAA 1 cut(s) 3538
BstFNI CGCG 2 cut(s) 241, 2958
BstH2I RGCGCY 2 cut(s) 2086, 2595
BstHHI GCGC 5 cut(s) 196, 241, 1438, 2085, 2594
BstMAI GTCTC 4 cut(s) 1672, 1804, 2085, 3153
BstMCI CGRYCG 1 cut(s) 3303
BstNI CCWGG 4 cut(s) 2087, 2559, 2667, 3455
BstNSI RCATGY 2 cut(s) 1793, 1960
BstSCI CCNGG 6 cut(s) 2001, 2085, 2557, 2665, 3385, 3453
BstSFI CTRYAG 1 cut(s) 1977
BstUI CGCG 2 cut(s) 241, 2958
BstV2I GAAGAC 3 cut(s) 2595, 3009, 3397
BstX2I RGATCY 5 cut(s) 829, 2669, 2744, 2758, 2855
BstXI CCANNNNNNTGG 1 cut(s) 332
BstYI RGATCY 5 cut(s) 829, 2669, 2744, 2758, 2855
BstZI CGGCCG 1 cut(s) 3300
Bsu36I CCTNAGG 2 cut(s) 306, 525
BsuRI GGCC 8 cut(s) 714, 1173, 1667, 3102, 3227, 3302, 3524, 3545
BtgZI GCGATG 1 cut(s) 204
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 8 cut(s) 35, 70, 456, 774, 1109, 2233, 2301, 3294
BveI ACCTGC 3 cut(s) 1403, 1618, 2617
CaiI CAGNNNCTG 2 cut(s) 1937, 2672
CciI TCATGA 1 cut(s) 3265
CfoI GCGC 5 cut(s) 196, 241, 1438, 2085, 2594
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 8 cut(s) 712, 1255, 1666, 2278, 2555, 3100, 3383, 3543
CseI GACGC 3 cut(s) 71, 524, 2981
Csp6I GTAC 2 cut(s) 156, 2498
CviAII CATG 8 cut(s) 414, 443, 1790, 1879, 1957, 2438, 3083, 3266
CviQI GTAC 2 cut(s) 156, 2498
DinI GGCGCC 1 cut(s) 2084
EaeI YGGCCR 2 cut(s) 3225, 3300
EagI CGGCCG 1 cut(s) 3300
EciI GGCGGA 1 cut(s) 2165
Ecl136II GAGCTC 1 cut(s) 880
EclXI CGGCCG 1 cut(s) 3300
Eco130I CCWWGG 2 cut(s) 1014, 3228
Eco147I AGGCCT 1 cut(s) 3524
Eco24I GRGCYC 1 cut(s) 882
Eco47I GGWCC 4 cut(s) 1255, 2278, 2555, 3383
Eco52I CGGCCG 1 cut(s) 3300
Eco53kI GAGCTC 1 cut(s) 880
Eco57I CTGAAG 7 cut(s) 1007, 1104, 1326, 1725, 2484, 2493, 3194
Eco81I CCTNAGG 2 cut(s) 306, 525
Eco88I CYCGRG 1 cut(s) 3097
EcoICRI GAGCTC 1 cut(s) 880
EcoO109I RGGNCCY 2 cut(s) 1255, 3383
EcoRI GAATTC 1 cut(s) 3568
EcoRII CCWGG 4 cut(s) 2085, 2557, 2665, 3453
EcoT14I CCWWGG 2 cut(s) 1014, 3228
EcoT38I GRGCYC 1 cut(s) 882
EgeI GGCGCC 1 cut(s) 2084
EheI GGCGCC 1 cut(s) 2084
ErhI CCWWGG 2 cut(s) 1014, 3228
FaeI CATG 8 cut(s) 417, 446, 1793, 1882, 1960, 2441, 3086, 3269
FalI AAGNNNNNCTT 2 cut(s) 774, 806
FaqI GGGAC 5 cut(s) 1471, 1701, 2469, 3324, 3369
FatI CATG 8 cut(s) 413, 442, 1789, 1878, 1956, 2437, 3082, 3265
FauI CCCGC 2 cut(s) 2243, 2963
FbaI TGATCA 1 cut(s) 1207
FriOI GRGCYC 1 cut(s) 882
GlaI GCGC 5 cut(s) 195, 240, 1437, 2084, 2593
GsuI CTGGAG 7 cut(s) 26, 750, 965, 2649, 2674, 3048, 3476
HaeII RGCGCY 2 cut(s) 2086, 2595
HaeIII GGCC 8 cut(s) 714, 1173, 1667, 3102, 3227, 3302, 3524, 3545
HapII CCGG 5 cut(s) 23, 124, 2003, 3042, 3387
HgaI GACGC 3 cut(s) 71, 524, 2981
HhaI GCGC 5 cut(s) 196, 241, 1438, 2085, 2594
Hin1I GRCGYC 2 cut(s) 63, 2083
Hin1II CATG 8 cut(s) 417, 446, 1793, 1882, 1960, 2441, 3086, 3269
Hin6I GCGC 5 cut(s) 194, 239, 1436, 2083, 2592
HinP1I GCGC 5 cut(s) 194, 239, 1436, 2083, 2592
HincII GTYRAC 4 cut(s) 61, 367, 1348, 2640
HindII GTYRAC 4 cut(s) 61, 367, 1348, 2640
HindIII AAGCTT 2 cut(s) 543, 1001
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 5 cut(s) 23, 124, 2003, 3042, 3387
HphI GGTGA 8 cut(s) 88, 1088, 2153, 2255, 2408, 2598, 3081, 3493
Hpy166II GTNNAC 7 cut(s) 61, 96, 158, 367, 1348, 2540, 2640
Hpy8I GTNNAC 7 cut(s) 61, 96, 158, 367, 1348, 2540, 2640
HpyCH4III ACNGT 5 cut(s) 74, 1512, 1522, 3008, 3093
HpyCH4IV ACGT 3 cut(s) 3163, 3432, 3502
HpySE526I ACGT 3 cut(s) 3163, 3432, 3502
Hsp92I GRCGYC 2 cut(s) 63, 2083
Hsp92II CATG 8 cut(s) 417, 446, 1793, 1882, 1960, 2441, 3086, 3269
HspAI GCGC 5 cut(s) 194, 239, 1436, 2083, 2592
KasI GGCGCC 1 cut(s) 2082
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 1207
KspAI GTTAAC 1 cut(s) 367
LguI GCTCTTC 1 cut(s) 3540
LmnI GCTCC 4 cut(s) 628, 799, 2410, 3583
MaeII ACGT 3 cut(s) 3163, 3432, 3502
MfeI CAATTG 1 cut(s) 3348
MflI RGATCY 5 cut(s) 829, 2669, 2744, 2758, 2855
MhlI GDGCHC 3 cut(s) 882, 1675, 2287
MlsI TGGCCA 1 cut(s) 3227
MluNI TGGCCA 1 cut(s) 3227
Mly113I GGCGCC 1 cut(s) 2083
MlyI GAGTC 8 cut(s) 722, 868, 1097, 1288, 1493, 1763, 3155, 3306
MmeI TCCRAC 8 cut(s) 633, 1877, 1889, 1987, 2160, 2502, 2964, 3173
Mox20I TGGCCA 1 cut(s) 3227
MroNI GCCGGC 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 472
MscI TGGCCA 1 cut(s) 3227
MslI CAYNNNNRTG 2 cut(s) 1788, 1794
Msp20I TGGCCA 1 cut(s) 3227
MspA1I CMGCKG 4 cut(s) 153, 797, 985, 3068
MspCI CTTAAG 2 cut(s) 664, 3340
MspI CCGG 5 cut(s) 23, 124, 2003, 3042, 3387
MspR9I CCNGG 6 cut(s) 2003, 2087, 2559, 2667, 3387, 3455
MunI CAATTG 1 cut(s) 3348
Mva1269I GAATGC 2 cut(s) 2329, 3400
MvaI CCWGG 4 cut(s) 2087, 2559, 2667, 3455
MvnI CGCG 2 cut(s) 241, 2958
NaeI GCCGGC 1 cut(s) 24
NarI GGCGCC 1 cut(s) 2083
NciI CCSGG 2 cut(s) 2003, 3387
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 8 cut(s) 417, 446, 1793, 1882, 1960, 2441, 3086, 3269
NlaIV GGNNCC 6 cut(s) 1257, 1469, 2084, 2556, 3385, 3579
NmeAIII GCCGAG 2 cut(s) 3544, 3554
NmuCI GTSAC 5 cut(s) 757, 836, 1234, 3155, 3425
NspI RCATGY 2 cut(s) 1793, 1960
NspV TTCGAA 1 cut(s) 3538
PaeI GCATGC 1 cut(s) 1793
PagI TCATGA 1 cut(s) 3265
PaqCI CACCTGC 1 cut(s) 2617
PceI AGGCCT 1 cut(s) 3524
PciSI GCTCTTC 1 cut(s) 3540
PctI GAATGC 2 cut(s) 2329, 3400
PdiI GCCGGC 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 472
PfeI GAWTC 9 cut(s) 350, 434, 512, 1114, 1301, 1633, 1970, 2711, 3269
PfoI TCCNGGA 2 cut(s) 2665, 3385
PleI GAGTC 8 cut(s) 722, 867, 1096, 1288, 1492, 1763, 3154, 3306
PluTI GGCGCC 1 cut(s) 2086
PpsI GAGTC 8 cut(s) 722, 867, 1096, 1288, 1492, 1763, 3154, 3306
PpuMI RGGWCCY 2 cut(s) 1255, 3383
PshBI ATTAAT 2 cut(s) 1194, 2787
Psp124BI GAGCTC 1 cut(s) 882
Psp5II RGGWCCY 2 cut(s) 1255, 3383
Psp6I CCWGG 4 cut(s) 2085, 2557, 2665, 3453
PspGI CCWGG 4 cut(s) 2085, 2557, 2665, 3453
PspN4I GGNNCC 6 cut(s) 1257, 1469, 2084, 2556, 3385, 3579
PspPI GGNCC 8 cut(s) 712, 1255, 1666, 2278, 2555, 3100, 3383, 3543
PspPPI RGGWCCY 2 cut(s) 1255, 3383
PsrI GAACNNNNNNTAC 2 cut(s) 2490, 2522
PstNI CAGNNNCTG 2 cut(s) 1937, 2672
PsuI RGATCY 5 cut(s) 829, 2669, 2744, 2758, 2855
PvuII CAGCTG 3 cut(s) 153, 985, 3068
RsaI GTAC 2 cut(s) 157, 2499
RsaNI GTAC 2 cut(s) 156, 2498
RseI CAYNNNNRTG 2 cut(s) 1788, 1794
SacI GAGCTC 1 cut(s) 882
SapI GCTCTTC 1 cut(s) 3540
Sau96I GGNCC 8 cut(s) 712, 1255, 1666, 2278, 2555, 3100, 3383, 3543
SchI GAGTC 8 cut(s) 722, 868, 1097, 1288, 1493, 1763, 3155, 3306
ScrFI CCNGG 6 cut(s) 2003, 2087, 2559, 2667, 3387, 3455
SduI GDGCHC 3 cut(s) 882, 1675, 2287
SfcI CTRYAG 1 cut(s) 1977
SfoI GGCGCC 1 cut(s) 2084
SfuI TTCGAA 1 cut(s) 3538
SinI GGWCC 4 cut(s) 1255, 2278, 2555, 3383
SmiMI CAYNNNNRTG 2 cut(s) 1788, 1794
SmlI CTYRAG 9 cut(s) 632, 664, 1296, 1733, 2586, 2996, 3236, 3340, 3378
SmoI CTYRAG 9 cut(s) 632, 664, 1296, 1733, 2586, 2996, 3236, 3340, 3378
SpeI ACTAGT 4 cut(s) 401, 932, 3023, 3275
SphI GCATGC 1 cut(s) 1793
SseBI AGGCCT 1 cut(s) 3524
SspDI GGCGCC 1 cut(s) 2082
SspI AATATT 1 cut(s) 1579
SstI GAGCTC 1 cut(s) 882
StuI AGGCCT 1 cut(s) 3524
StyD4I CCNGG 6 cut(s) 2001, 2085, 2557, 2665, 3385, 3453
StyI CCWWGG 2 cut(s) 1014, 3228
TaaI ACNGT 5 cut(s) 74, 1512, 1522, 3008, 3093
TaiI ACGT 3 cut(s) 3166, 3435, 3505
TaqI TCGA 7 cut(s) 246, 427, 1056, 1482, 1531, 3029, 3538
TaqII GACCGA 1 cut(s) 2295
TatI WGTACW 1 cut(s) 155
TauI GCSGC 1 cut(s) 3302
TfiI GAWTC 9 cut(s) 350, 434, 512, 1114, 1301, 1633, 1970, 2711, 3269
TscAI CASTG 8 cut(s) 42, 77, 456, 774, 1116, 2233, 2301, 3294
TseFI GTSAC 5 cut(s) 757, 836, 1234, 3155, 3425
Tsp45I GTSAC 5 cut(s) 757, 836, 1234, 3155, 3425
TspGWI ACGGA 1 cut(s) 824
TspRI CASTG 8 cut(s) 42, 77, 456, 774, 1116, 2233, 2301, 3294
Vha464I CTTAAG 2 cut(s) 664, 3340
VpaK11BI GGWCC 4 cut(s) 1255, 2278, 2555, 3383
VspI ATTAAT 2 cut(s) 1194, 2787
XapI RAATTY 8 cut(s) 289, 315, 570, 1371, 1888, 2034, 2842, 3568
XbaI TCTAGA 1 cut(s) 1042
XceI RCATGY 2 cut(s) 1793, 1960
XcmI CCANNNNNNNNNTGG 2 cut(s) 1429, 3080
XmnI GAANNNNTTC 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.