No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G34780 AT2G34780 AT2G34780 AT2G34780 |
| fragaria_vesca | FvH4_3g10781 FvH4_3g10781 |
| malus_domestica | MD05G1268800.v1.1 MD10G1247500.v1.1 |
| prunus_persica | Prupe.4G095800_v2.0.a1 |
| pyrus_communis | pycom05g25180 pycom10g20530 |
| rosa_chinensis | RchiOBHm_Chr5g0017511 |
| rosa_laevigata | RLG00000032295 |
| rosa_multiflora | Rmu_sc0008764.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00059920 |
| rosa_rugosa | Rorug05G0036700 |
| rosa_samantha | Rh5AG130800 Rh5BG128700 Rh5CG141000 Rh5DG130900 |
| rosa_wichuraiana | Rw5G011280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3143 |
| AarI | CACCTGC | 1 cut(s) | 1854 |
| AatII | GACGTC | 1 cut(s) | 2834 |
| Acc36I | ACCTGC | 1 cut(s) | 1854 |
| AccB1I | GGYRCC | 1 cut(s) | 1595 |
| AccII | CGCG | 1 cut(s) | 474 |
| AciI | CCGC | 6 cut(s) | 100, 653, 1328, 1849, 2145, 2567 |
| AclWI | GGATC | 4 cut(s) | 2125, 2138, 2313, 4028 |
| AcoI | YGGCCR | 3 cut(s) | 2676, 2857, 3811 |
| AcuI | CTGAAG | 6 cut(s) | 497, 1403, 1925, 2019, 2514, 2748 |
| AcyI | GRCGYC | 1 cut(s) | 2831 |
| AfaI | GTAC | 6 cut(s) | 68, 1358, 1549, 1996, 3158, 3373 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 121, 1402, 1442, 1502, 2845, 2866, 3003, 3685 |
| AflII | CTTAAG | 1 cut(s) | 1169 |
| AflIII | ACRYGT | 2 cut(s) | 2585, 3374 |
| AjiI | CACGTC | 1 cut(s) | 13 |
| AjnI | CCWGG | 4 cut(s) | 829, 1293, 1933, 2478 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3786, 3818 |
| Alw21I | GWGCWC | 2 cut(s) | 2672, 3585 |
| Alw26I | GTCTC | 5 cut(s) | 341, 1497, 2283, 2394, 2945 |
| Alw44I | GTGCAC | 1 cut(s) | 3581 |
| AlwI | GGATC | 4 cut(s) | 2125, 2138, 2313, 4028 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 947, 1294, 3410 |
| Ama87I | CYCGRG | 5 cut(s) | 26, 147, 2291, 3003, 3299 |
| AoxI | GGCC | 7 cut(s) | 561, 2049, 2112, 2676, 2857, 3000, 3811 |
| ApaLI | GTGCAC | 1 cut(s) | 3581 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1194, 1226, 4079, 4111 |
| AseI | ATTAAT | 1 cut(s) | 330 |
| AspLEI | GCGC | 3 cut(s) | 474, 476, 1293 |
| AspS9I | GGNCC | 2 cut(s) | 112, 3001 |
| AsuC2I | CCSGG | 3 cut(s) | 3004, 3005, 3902 |
| AsuHPI | GGTGA | 6 cut(s) | 967, 1958, 2171, 2582, 3037, 3599 |
| AsuII | TTCGAA | 2 cut(s) | 3503, 3981 |
| AvaI | CYCGRG | 5 cut(s) | 26, 147, 2291, 3003, 3299 |
| AvaII | GGWCC | 1 cut(s) | 112 |
| BaeGI | GKGCMC | 1 cut(s) | 3585 |
| BalI | TGGCCA | 2 cut(s) | 2678, 3813 |
| BamHI | GGATCC | 1 cut(s) | 2130 |
| BanI | GGYRCC | 1 cut(s) | 1595 |
| BanII | GRGCYC | 2 cut(s) | 1583, 2873 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 852, 884 |
| BauI | CACGAG | 2 cut(s) | 821, 1020 |
| BbsI | GAAGAC | 2 cut(s) | 1931, 2619 |
| Bbv12I | GWGCWC | 2 cut(s) | 2672, 3585 |
| BbvCI | CCTCAGC | 1 cut(s) | 1668 |
| BceAI | ACGGC | 2 cut(s) | 1688, 3966 |
| BciT130I | CCWGG | 4 cut(s) | 831, 1295, 1935, 2480 |
| BciVI | GTATCC | 2 cut(s) | 1782, 3530 |
| BclI | TGATCA | 1 cut(s) | 1027 |
| BcnI | CCSGG | 3 cut(s) | 3004, 3005, 3902 |
| BcoDI | GTCTC | 5 cut(s) | 341, 1497, 2283, 2394, 2945 |
| BfaI | CTAG | 3 cut(s) | 1083, 1253, 3624 |
| BfmI | CTRYAG | 4 cut(s) | 2092, 3285, 3411, 4011 |
| BfoI | RGCGCY | 1 cut(s) | 1294 |
| BfrI | CTTAAG | 1 cut(s) | 1169 |
| BfuAI | ACCTGC | 1 cut(s) | 1854 |
| BfuI | GTATCC | 2 cut(s) | 1782, 3530 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1709 |
| BglII | AGATCT | 2 cut(s) | 3179, 3281 |
| BmcAI | AGTACT | 2 cut(s) | 68, 1996 |
| Bme1390I | CCNGG | 7 cut(s) | 831, 1295, 1935, 2480, 3004, 3005, 3902 |
| Bme18I | GGWCC | 1 cut(s) | 112 |
| BmeT110I | CYCGRG | 5 cut(s) | 26, 147, 2291, 3003, 3299 |
| BmgBI | CACGTC | 1 cut(s) | 13 |
| BmgT120I | GGNCC | 2 cut(s) | 112, 3001 |
| BmiI | GGNNCC | 5 cut(s) | 828, 1597, 2132, 3446, 4008 |
| BmrFI | CCNGG | 7 cut(s) | 831, 1295, 1935, 2480, 3004, 3005, 3902 |
| BmrI | ACTGGG | 3 cut(s) | 1391, 2445, 4143 |
| BmuI | ACTGGG | 3 cut(s) | 1391, 2445, 4143 |
| BpiI | GAAGAC | 2 cut(s) | 1931, 2619 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1064, 1096, 3002, 3034 |
| BpmI | CTGGAG | 2 cut(s) | 1464, 1479 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1668 |
| Bpu14I | TTCGAA | 2 cut(s) | 3503, 3981 |
| BpuEI | CTTGAG | 5 cut(s) | 255, 288, 2121, 2705, 3892 |
| BpuMI | CCSGG | 3 cut(s) | 3004, 3005, 3902 |
| BsaAI | YACGTR | 2 cut(s) | 425, 2586 |
| BsaHI | GRCGYC | 1 cut(s) | 2831 |
| BsaJI | CCNNGG | 9 cut(s) | 1294, 1704, 2745, 2997, 3003, 3684, 3743, 3808, 3841 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2391, 2421 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 121, 1402, 1442, 1502, 2845, 2866, 3003, 3685 |
| Bse1I | ACTGG | 6 cut(s) | 17, 1397, 1496, 1545, 2440, 4138 |
| Bse3DI | GCAATG | 4 cut(s) | 2268, 2463, 3953, 4017 |
| BseBI | CCWGG | 4 cut(s) | 831, 1295, 1935, 2480 |
| BseDI | CCNNGG | 9 cut(s) | 1294, 1704, 2745, 2997, 3003, 3684, 3743, 3808, 3841 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 121, 1402, 1442, 1502, 2845, 2866, 3003, 3685 |
| BseMI | GCAATG | 4 cut(s) | 2268, 2463, 3953, 4017 |
| BseMII | CTCAG | 8 cut(s) | 939, 1659, 2784, 2886, 3387, 3682, 3768, 4055 |
| BseNI | ACTGG | 6 cut(s) | 17, 1397, 1496, 1545, 2440, 4138 |
| BsePI | GCGCGC | 1 cut(s) | 472 |
| BseRI | GAGGAG | 4 cut(s) | 683, 1085, 1871, 2543 |
| BseSI | GKGCMC | 1 cut(s) | 3585 |
| BseYI | CCCAGC | 2 cut(s) | 3714, 3958 |
| BsgI | GTGCAG | 2 cut(s) | 1407, 3138 |
| Bsh1236I | CGCG | 1 cut(s) | 474 |
| BshFI | GGCC | 7 cut(s) | 563, 2051, 2114, 2678, 2859, 3002, 3813 |
| BshNI | GGYRCC | 1 cut(s) | 1595 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2672, 3585 |
| BsiHKCI | CYCGRG | 5 cut(s) | 26, 147, 2291, 3003, 3299 |
| BsiSI | CCGG | 2 cut(s) | 3004, 3901 |
| BslFI | GGGAC | 2 cut(s) | 99, 3917 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 121, 1402, 1442, 1502, 2845, 2866, 3003, 3685 |
| BsmAI | GTCTC | 5 cut(s) | 341, 1497, 2283, 2394, 2945 |
| BsmBI | CGTCTC | 1 cut(s) | 341 |
| BsmFI | GGGAC | 2 cut(s) | 99, 3917 |
| BsmI | GAATGC | 1 cut(s) | 394 |
| BsnI | GGCC | 7 cut(s) | 563, 2051, 2114, 2678, 2859, 3002, 3813 |
| BsoBI | CYCGRG | 5 cut(s) | 26, 147, 2291, 3003, 3299 |
| Bsp119I | TTCGAA | 2 cut(s) | 3503, 3981 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1583, 2672, 2873, 3585 |
| Bsp1407I | TGTACA | 2 cut(s) | 1356, 3371 |
| Bsp143I | GATC | 9 cut(s) | 1027, 1276, 2130, 2318, 3179, 3281, 3664, 3673, 4033 |
| BspACI | CCGC | 6 cut(s) | 100, 653, 1328, 1849, 2145, 2567 |
| BspANI | GGCC | 7 cut(s) | 563, 2051, 2114, 2678, 2859, 3002, 3813 |
| BspCNI | CTCAG | 8 cut(s) | 940, 1660, 2783, 2885, 3388, 3681, 3769, 4054 |
| BspFNI | CGCG | 1 cut(s) | 474 |
| BspHI | TCATGA | 1 cut(s) | 3276 |
| BspLI | GGNNCC | 5 cut(s) | 828, 1597, 2132, 3446, 4008 |
| BspMAI | CTGCAG | 2 cut(s) | 2096, 4015 |
| BspMI | ACCTGC | 1 cut(s) | 1854 |
| BspPI | GGATC | 4 cut(s) | 2125, 2138, 2313, 4028 |
| BspT104I | TTCGAA | 2 cut(s) | 3503, 3981 |
| BspT107I | GGYRCC | 1 cut(s) | 1595 |
| BspTI | CTTAAG | 1 cut(s) | 1169 |
| BsrDI | GCAATG | 4 cut(s) | 2268, 2463, 3953, 4017 |
| BsrGI | TGTACA | 2 cut(s) | 1356, 3371 |
| BsrI | ACTGG | 6 cut(s) | 17, 1397, 1496, 1545, 2440, 4138 |
| BssECI | CCNNGG | 9 cut(s) | 1294, 1704, 2745, 2997, 3003, 3684, 3743, 3808, 3841 |
| BssHII | GCGCGC | 1 cut(s) | 472 |
| BssMI | GATC | 9 cut(s) | 1027, 1276, 2130, 2318, 3179, 3281, 3664, 3673, 4033 |
| BssNI | GRCGYC | 1 cut(s) | 2831 |
| BssSI | CACGAG | 2 cut(s) | 821, 1020 |
| BssT1I | CCWWGG | 4 cut(s) | 2745, 3684, 3808, 3841 |
| Bst2BI | CACGAG | 2 cut(s) | 821, 1020 |
| Bst2UI | CCWGG | 4 cut(s) | 831, 1295, 1935, 2480 |
| Bst6I | CTCTTC | 7 cut(s) | 698, 1626, 1750, 1772, 1995, 2962, 3646 |
| BstACI | GRCGYC | 1 cut(s) | 2831 |
| BstAFI | CTTAAG | 1 cut(s) | 1169 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4019 |
| BstAUI | TGTACA | 2 cut(s) | 1356, 3371 |
| BstBAI | YACGTR | 2 cut(s) | 425, 2586 |
| BstBI | TTCGAA | 2 cut(s) | 3503, 3981 |
| BstDSI | CCRYGG | 1 cut(s) | 1704 |
| BstEII | GGTNACC | 1 cut(s) | 1672 |
| BstFNI | CGCG | 1 cut(s) | 474 |
| BstH2I | RGCGCY | 1 cut(s) | 1294 |
| BstHHI | GCGC | 3 cut(s) | 474, 476, 1293 |
| BstKTI | GATC | 9 cut(s) | 1030, 1279, 2133, 2321, 3182, 3284, 3667, 3676, 4036 |
| BstMAI | GTCTC | 5 cut(s) | 341, 1497, 2283, 2394, 2945 |
| BstMBI | GATC | 9 cut(s) | 1027, 1276, 2130, 2318, 3179, 3281, 3664, 3673, 4033 |
| BstNI | CCWGG | 4 cut(s) | 831, 1295, 1935, 2480 |
| BstNSI | RCATGY | 4 cut(s) | 132, 1199, 3215, 3378 |
| BstPI | GGTNACC | 1 cut(s) | 1672 |
| BstSCI | CCNGG | 7 cut(s) | 829, 1293, 1933, 2478, 3002, 3003, 3900 |
| BstSFI | CTRYAG | 4 cut(s) | 2092, 3285, 3411, 4011 |
| BstSLI | GKGCMC | 1 cut(s) | 3585 |
| BstUI | CGCG | 1 cut(s) | 474 |
| BstV2I | GAAGAC | 2 cut(s) | 1931, 2619 |
| BstX2I | RGATCY | 4 cut(s) | 2130, 2318, 3179, 3281 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2122, 2486 |
| BstYI | RGATCY | 4 cut(s) | 2130, 2318, 3179, 3281 |
| BsuI | GTATCC | 2 cut(s) | 1782, 3530 |
| BsuRI | GGCC | 7 cut(s) | 563, 2051, 2114, 2678, 2859, 3002, 3813 |
| BtgI | CCRYGG | 1 cut(s) | 1704 |
| BtgZI | GCGATG | 1 cut(s) | 3500 |
| BtrI | CACGTC | 1 cut(s) | 13 |
| BtsI | GCAGTG | 3 cut(s) | 1419, 2793, 3624 |
| BveI | ACCTGC | 1 cut(s) | 1854 |
| CaiI | CAGNNNCTG | 3 cut(s) | 947, 1294, 3410 |
| CciI | TCATGA | 1 cut(s) | 3276 |
| CfoI | GCGC | 3 cut(s) | 474, 476, 1293 |
| Cfr13I | GGNCC | 2 cut(s) | 112, 3001 |
| Cfr9I | CCCGGG | 1 cut(s) | 3003 |
| CseI | GACGC | 3 cut(s) | 1415, 1602, 2077 |
| Csp6I | GTAC | 6 cut(s) | 67, 1357, 1548, 1995, 3157, 3372 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3919, 3954 |
| CviQI | GTAC | 6 cut(s) | 67, 1357, 1548, 1995, 3157, 3372 |
| DpnI | GATC | 9 cut(s) | 1029, 1278, 2132, 2320, 3181, 3283, 3666, 3675, 4035 |
| DpnII | GATC | 9 cut(s) | 1027, 1276, 2130, 2318, 3179, 3281, 3664, 3673, 4033 |
| DraI | TTTAAA | 2 cut(s) | 1375, 3606 |
| EaeI | YGGCCR | 3 cut(s) | 2676, 2857, 3811 |
| Eam1104I | CTCTTC | 7 cut(s) | 698, 1626, 1750, 1772, 1995, 2962, 3646 |
| EarI | CTCTTC | 7 cut(s) | 698, 1626, 1750, 1772, 1995, 2962, 3646 |
| Eco130I | CCWWGG | 4 cut(s) | 2745, 3684, 3808, 3841 |
| Eco24I | GRGCYC | 2 cut(s) | 1583, 2873 |
| Eco32I | GATATC | 1 cut(s) | 2578 |
| Eco47I | GGWCC | 1 cut(s) | 112 |
| Eco57I | CTGAAG | 6 cut(s) | 497, 1403, 1925, 2019, 2514, 2748 |
| Eco88I | CYCGRG | 5 cut(s) | 26, 147, 2291, 3003, 3299 |
| Eco91I | GGTNACC | 1 cut(s) | 1672 |
| EcoO65I | GGTNACC | 1 cut(s) | 1672 |
| EcoRI | GAATTC | 1 cut(s) | 3505 |
| EcoRII | CCWGG | 4 cut(s) | 829, 1293, 1933, 2478 |
| EcoRV | GATATC | 1 cut(s) | 2578 |
| EcoT14I | CCWWGG | 4 cut(s) | 2745, 3684, 3808, 3841 |
| EcoT22I | ATGCAT | 1 cut(s) | 3773 |
| EcoT38I | GRGCYC | 2 cut(s) | 1583, 2873 |
| ErhI | CCWWGG | 4 cut(s) | 2745, 3684, 3808, 3841 |
| Esp3I | CGTCTC | 1 cut(s) | 341 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 276, 308, 1583, 1615, 2721, 2753 |
| FaqI | GGGAC | 2 cut(s) | 99, 3917 |
| FauI | CCCGC | 3 cut(s) | 93, 1842, 2560 |
| FauNDI | CATATG | 1 cut(s) | 1954 |
| FbaI | TGATCA | 1 cut(s) | 1027 |
| FriOI | GRGCYC | 2 cut(s) | 1583, 2873 |
| FspBI | CTAG | 3 cut(s) | 1083, 1253, 3624 |
| GlaI | GCGC | 3 cut(s) | 473, 475, 1292 |
| GsaI | CCCAGC | 2 cut(s) | 3718, 3962 |
| GsuI | CTGGAG | 2 cut(s) | 1464, 1479 |
| HaeII | RGCGCY | 1 cut(s) | 1294 |
| HaeIII | GGCC | 7 cut(s) | 563, 2051, 2114, 2678, 2859, 3002, 3813 |
| HapII | CCGG | 2 cut(s) | 3004, 3901 |
| HgaI | GACGC | 3 cut(s) | 1415, 1602, 2077 |
| HhaI | GCGC | 3 cut(s) | 474, 476, 1293 |
| Hin1I | GRCGYC | 1 cut(s) | 2831 |
| Hin6I | GCGC | 3 cut(s) | 472, 474, 1291 |
| HinP1I | GCGC | 3 cut(s) | 472, 474, 1291 |
| HindIII | AAGCTT | 2 cut(s) | 578, 599 |
| HpaII | CCGG | 2 cut(s) | 3004, 3901 |
| HphI | GGTGA | 6 cut(s) | 967, 1958, 2171, 2582, 3037, 3599 |
| Hpy166II | GTNNAC | 8 cut(s) | 112, 289, 1038, 2555, 2829, 3028, 3572, 3583 |
| Hpy8I | GTNNAC | 8 cut(s) | 112, 289, 1038, 2555, 2829, 3028, 3572, 3583 |
| HpyCH4IV | ACGT | 5 cut(s) | 12, 424, 1378, 2585, 2831 |
| HpySE526I | ACGT | 5 cut(s) | 12, 424, 1378, 2585, 2831 |
| Hsp92I | GRCGYC | 1 cut(s) | 2831 |
| HspAI | GCGC | 3 cut(s) | 472, 474, 1291 |
| Ksp22I | TGATCA | 1 cut(s) | 1027 |
| Kzo9I | GATC | 9 cut(s) | 1027, 1276, 2130, 2318, 3179, 3281, 3664, 3673, 4033 |
| MaeI | CTAG | 3 cut(s) | 1083, 1253, 3624 |
| MaeII | ACGT | 5 cut(s) | 12, 424, 1378, 2585, 2831 |
| MalI | GATC | 9 cut(s) | 1029, 1278, 2132, 2320, 3181, 3283, 3666, 3675, 4035 |
| MboI | GATC | 9 cut(s) | 1027, 1276, 2130, 2318, 3179, 3281, 3664, 3673, 4033 |
| MfeI | CAATTG | 2 cut(s) | 1809, 3881 |
| MflI | RGATCY | 4 cut(s) | 2130, 2318, 3179, 3281 |
| MhlI | GDGCHC | 4 cut(s) | 1583, 2672, 2873, 3585 |
| MlsI | TGGCCA | 2 cut(s) | 2678, 3813 |
| MluNI | TGGCCA | 2 cut(s) | 2678, 3813 |
| MlyI | GAGTC | 6 cut(s) | 383, 953, 1499, 2477, 3632, 3899 |
| MmeI | TCCRAC | 5 cut(s) | 498, 1680, 1732, 2859, 3741 |
| Mox20I | TGGCCA | 2 cut(s) | 2678, 3813 |
| Mph1103I | ATGCAT | 1 cut(s) | 3773 |
| MscI | TGGCCA | 2 cut(s) | 2678, 3813 |
| MslI | CAYNNNNRTG | 4 cut(s) | 194, 2394, 3112, 3895 |
| Msp20I | TGGCCA | 2 cut(s) | 2678, 3813 |
| MspA1I | CMGCKG | 2 cut(s) | 653, 4115 |
| MspCI | CTTAAG | 1 cut(s) | 1169 |
| MspI | CCGG | 2 cut(s) | 3004, 3901 |
| MspR9I | CCNGG | 7 cut(s) | 831, 1295, 1935, 2480, 3004, 3005, 3902 |
| MunI | CAATTG | 2 cut(s) | 1809, 3881 |
| Mva1269I | GAATGC | 1 cut(s) | 394 |
| MvaI | CCWGG | 4 cut(s) | 831, 1295, 1935, 2480 |
| MvnI | CGCG | 1 cut(s) | 474 |
| NciI | CCSGG | 3 cut(s) | 3004, 3005, 3902 |
| NdeI | CATATG | 1 cut(s) | 1954 |
| NdeII | GATC | 9 cut(s) | 1027, 1276, 2130, 2318, 3179, 3281, 3664, 3673, 4033 |
| NlaIV | GGNNCC | 5 cut(s) | 828, 1597, 2132, 3446, 4008 |
| NmeAIII | GCCGAG | 1 cut(s) | 3724 |
| NmuCI | GTSAC | 2 cut(s) | 2570, 3014 |
| NsiI | ATGCAT | 1 cut(s) | 3773 |
| NspI | RCATGY | 4 cut(s) | 132, 1199, 3215, 3378 |
| NspV | TTCGAA | 2 cut(s) | 3503, 3981 |
| PaeI | GCATGC | 3 cut(s) | 132, 1199, 3215 |
| PaeR7I | CTCGAG | 3 cut(s) | 26, 147, 3299 |
| PagI | TCATGA | 1 cut(s) | 3276 |
| PaqCI | CACCTGC | 1 cut(s) | 1854 |
| PauI | GCGCGC | 1 cut(s) | 472 |
| PciI | ACATGT | 1 cut(s) | 3374 |
| PctI | GAATGC | 1 cut(s) | 394 |
| PfoI | TCCNGGA | 1 cut(s) | 2478 |
| PleI | GAGTC | 6 cut(s) | 382, 952, 1498, 2477, 3632, 3899 |
| PpsI | GAGTC | 6 cut(s) | 382, 952, 1498, 2477, 3632, 3899 |
| Ppu21I | YACGTR | 2 cut(s) | 425, 2586 |
| PscI | ACATGT | 1 cut(s) | 3374 |
| PshBI | ATTAAT | 1 cut(s) | 330 |
| PsiI | TTATAA | 1 cut(s) | 3143 |
| Psp6I | CCWGG | 4 cut(s) | 829, 1293, 1933, 2478 |
| PspEI | GGTNACC | 1 cut(s) | 1672 |
| PspFI | CCCAGC | 2 cut(s) | 3714, 3958 |
| PspGI | CCWGG | 4 cut(s) | 829, 1293, 1933, 2478 |
| PspN4I | GGNNCC | 5 cut(s) | 828, 1597, 2132, 3446, 4008 |
| PspPI | GGNCC | 2 cut(s) | 112, 3001 |
| PspXI | VCTCGAGB | 1 cut(s) | 147 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2644, 2676 |
| PstI | CTGCAG | 2 cut(s) | 2096, 4015 |
| PstNI | CAGNNNCTG | 3 cut(s) | 947, 1294, 3410 |
| PsuI | RGATCY | 4 cut(s) | 2130, 2318, 3179, 3281 |
| PteI | GCGCGC | 1 cut(s) | 472 |
| PvuII | CAGCTG | 1 cut(s) | 4115 |
| RsaI | GTAC | 6 cut(s) | 68, 1358, 1549, 1996, 3158, 3373 |
| RsaNI | GTAC | 6 cut(s) | 67, 1357, 1548, 1995, 3157, 3372 |
| RseI | CAYNNNNRTG | 4 cut(s) | 194, 2394, 3112, 3895 |
| Sau3AI | GATC | 9 cut(s) | 1027, 1276, 2130, 2318, 3179, 3281, 3664, 3673, 4033 |
| Sau96I | GGNCC | 2 cut(s) | 112, 3001 |
| ScaI | AGTACT | 2 cut(s) | 68, 1996 |
| SchI | GAGTC | 6 cut(s) | 383, 953, 1499, 2477, 3632, 3899 |
| ScrFI | CCNGG | 7 cut(s) | 831, 1295, 1935, 2480, 3004, 3005, 3902 |
| SduI | GDGCHC | 4 cut(s) | 1583, 2672, 2873, 3585 |
| SfcI | CTRYAG | 4 cut(s) | 2092, 3285, 3411, 4011 |
| Sfr274I | CTCGAG | 3 cut(s) | 26, 147, 3299 |
| SfuI | TTCGAA | 2 cut(s) | 3503, 3981 |
| SinI | GGWCC | 1 cut(s) | 112 |
| SlaI | CTCGAG | 3 cut(s) | 26, 147, 3299 |
| SmaI | CCCGGG | 1 cut(s) | 3005 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 194, 2394, 3112, 3895 |
| SmlI | CTYRAG | 9 cut(s) | 26, 147, 270, 303, 1169, 2136, 2720, 3299, 3871 |
| SmoI | CTYRAG | 9 cut(s) | 26, 147, 270, 303, 1169, 2136, 2720, 3299, 3871 |
| SphI | GCATGC | 3 cut(s) | 132, 1199, 3215 |
| SsiI | CCGC | 6 cut(s) | 100, 653, 1328, 1849, 2145, 2567 |
| SspI | AATATT | 1 cut(s) | 2608 |
| SspMI | CTAG | 3 cut(s) | 1083, 1253, 3624 |
| StyD4I | CCNGG | 7 cut(s) | 829, 1293, 1933, 2478, 3002, 3003, 3900 |
| StyI | CCWWGG | 4 cut(s) | 2745, 3684, 3808, 3841 |
| TaiI | ACGT | 5 cut(s) | 15, 427, 1381, 2588, 2834 |
| TaqII | GACCGA | 1 cut(s) | 3911 |
| TatI | WGTACW | 5 cut(s) | 66, 1356, 1547, 1994, 3371 |
| TseFI | GTSAC | 2 cut(s) | 2570, 3014 |
| Tsp45I | GTSAC | 2 cut(s) | 2570, 3014 |
| TspGWI | ACGGA | 1 cut(s) | 137 |
| TspMI | CCCGGG | 1 cut(s) | 3003 |
| Vha464I | CTTAAG | 1 cut(s) | 1169 |
| VneI | GTGCAC | 1 cut(s) | 3581 |
| VpaK11BI | GGWCC | 1 cut(s) | 112 |
| VspI | ATTAAT | 1 cut(s) | 330 |
| XbaI | TCTAGA | 1 cut(s) | 1082 |
| XceI | RCATGY | 4 cut(s) | 132, 1199, 3215, 3378 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2842 |
| XhoI | CTCGAG | 3 cut(s) | 26, 147, 3299 |
| XmaI | CCCGGG | 1 cut(s) | 3003 |
| XspI | CTAG | 3 cut(s) | 1083, 1253, 3624 |
| ZraI | GACGTC | 1 cut(s) | 2832 |
| ZrmI | AGTACT | 2 cut(s) | 68, 1996 |
| Zsp2I | ATGCAT | 1 cut(s) | 3773 |