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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G34780 AT2G34780 AT2G34780 AT2G34780 |
| fragaria_vesca | FvH4_3g10781 FvH4_3g10781 |
| malus_domestica | MD05G1268800.v1.1 MD10G1247500.v1.1 |
| prunus_persica | Prupe.4G095800_v2.0.a1 |
| pyrus_communis | pycom05g25180 pycom10g20530 |
| rosa_chinensis | RchiOBHm_Chr5g0017511 |
| rosa_laevigata | RLG00000032295 |
| rosa_multiflora | Rmu_sc0008764.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00059920 |
| rosa_rugosa | Rorug05G0036700 |
| rosa_samantha | Rh5AG130800 Rh5BG128700 Rh5CG141000 Rh5DG130900 |
| rosa_wichuraiana | Rw5G011280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3825 |
| Acc36I | ACCTGC | 2 cut(s) | 2278, 4124 |
| AccB1I | GGYRCC | 1 cut(s) | 2033 |
| AccI | GTMKAC | 1 cut(s) | 2102 |
| AclWI | GGATC | 5 cut(s) | 1157, 1170, 1829, 1909, 3800 |
| AcoI | YGGCCR | 1 cut(s) | 1171 |
| AcuI | CTGAAG | 7 cut(s) | 669, 774, 1350, 1538, 2898, 3009, 3572 |
| AdeI | CACNNNGTG | 2 cut(s) | 3467, 3873 |
| AfaI | GTAC | 3 cut(s) | 1987, 2175, 2461 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 166, 1822, 1883, 2287, 2863, 3223, 3815, 3898 |
| AflIII | ACRYGT | 2 cut(s) | 1956, 3243 |
| AgeI | ACCGGT | 1 cut(s) | 2344 |
| AhlI | ACTAGT | 1 cut(s) | 2549 |
| AjnI | CCWGG | 4 cut(s) | 1165, 1709, 2856, 4254 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 648, 680, 878, 910, 2384, 2416 |
| Alw21I | GWGCWC | 2 cut(s) | 3050, 3251 |
| Alw26I | GTCTC | 8 cut(s) | 286, 428, 677, 1080, 1289, 1938, 2667, 3323 |
| AlwI | GGATC | 5 cut(s) | 1157, 1170, 1829, 1909, 3800 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3713 |
| Ama87I | CYCGRG | 2 cut(s) | 2675, 3650 |
| AoxI | GGCC | 4 cut(s) | 75, 1171, 1347, 4251 |
| AsiGI | ACCGGT | 1 cut(s) | 2344 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 180, 3114, 3593, 3951 |
| AspLEI | GCGC | 2 cut(s) | 92, 1647 |
| AspS9I | GGNCC | 7 cut(s) | 1347, 1865, 2686, 3818, 3936, 4125, 4252 |
| AsuHPI | GGTGA | 9 cut(s) | 1006, 1279, 1312, 1507, 1742, 2507, 2792, 3278, 4270 |
| AvaI | CYCGRG | 2 cut(s) | 2675, 3650 |
| AvaII | GGWCC | 5 cut(s) | 1865, 2686, 3818, 3936, 4125 |
| BalI | TGGCCA | 1 cut(s) | 1173 |
| BamHI | GGATCC | 1 cut(s) | 1162 |
| BanI | GGYRCC | 1 cut(s) | 2033 |
| BanII | GRGCYC | 1 cut(s) | 2021 |
| BauI | CACGAG | 2 cut(s) | 1059, 1365 |
| BbsI | GAAGAC | 2 cut(s) | 2997, 4130 |
| Bbv12I | GWGCWC | 2 cut(s) | 3050, 3251 |
| BbvCI | CCTCAGC | 1 cut(s) | 3957 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1430, 1464, 2120, 2154, 3228, 3262 |
| BciT130I | CCWGG | 4 cut(s) | 1167, 1711, 2858, 4256 |
| BciVI | GTATCC | 1 cut(s) | 1601 |
| BclI | TGATCA | 2 cut(s) | 1630, 3478 |
| BcoDI | GTCTC | 8 cut(s) | 286, 428, 677, 1080, 1289, 1938, 2667, 3323 |
| BcuI | ACTAGT | 1 cut(s) | 2549 |
| BfaI | CTAG | 7 cut(s) | 1428, 1938, 2550, 2690, 3009, 3381, 4329 |
| BfmI | CTRYAG | 3 cut(s) | 2635, 2829, 3762 |
| BfuAI | ACCTGC | 2 cut(s) | 2278, 4124 |
| BfuI | GTATCC | 1 cut(s) | 1601 |
| Bme1390I | CCNGG | 4 cut(s) | 1167, 1711, 2858, 4256 |
| Bme18I | GGWCC | 5 cut(s) | 1865, 2686, 3818, 3936, 4125 |
| BmeT110I | CYCGRG | 2 cut(s) | 2675, 3650 |
| BmgT120I | GGNCC | 7 cut(s) | 1347, 1865, 2686, 3818, 3936, 4125, 4252 |
| BmiI | GGNNCC | 6 cut(s) | 66, 1164, 2035, 3819, 4126, 4302 |
| BmrFI | CCNGG | 4 cut(s) | 1167, 1711, 2858, 4256 |
| BmrI | ACTGGG | 1 cut(s) | 1811 |
| BmsI | GCATC | 8 cut(s) | 1454, 2000, 2224, 2857, 3032, 3742, 3923, 4237 |
| BmuI | ACTGGG | 1 cut(s) | 1811 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3941 |
| BpiI | GAAGAC | 2 cut(s) | 2997, 4130 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 608, 640 |
| BpmI | CTGGAG | 2 cut(s) | 308, 1905 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1548, 3957 |
| BpuEI | CTTGAG | 6 cut(s) | 188, 314, 410, 659, 2945, 4105 |
| BsaAI | YACGTR | 1 cut(s) | 3577 |
| BsaI | GGTCTC | 2 cut(s) | 286, 3323 |
| BsaJI | CCNNGG | 7 cut(s) | 1350, 1753, 2846, 3313, 3543, 4021, 4254 |
| BsaWI | WCCGGW | 1 cut(s) | 2344 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1655, 1685 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 166, 1822, 1883, 2287, 2863, 3223, 3815, 3898 |
| Bse118I | RCCGGY | 2 cut(s) | 58, 2344 |
| Bse1I | ACTGG | 5 cut(s) | 1817, 1867, 1903, 3939, 4128 |
| Bse3DI | GCAATG | 5 cut(s) | 2652, 2841, 3025, 3779, 3991 |
| BseBI | CCWGG | 4 cut(s) | 1167, 1711, 2858, 4256 |
| BseDI | CCNNGG | 7 cut(s) | 1350, 1753, 2846, 3313, 3543, 4021, 4254 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 166, 1822, 1883, 2287, 2863, 3223, 3815, 3898 |
| BseMI | GCAATG | 5 cut(s) | 2652, 2841, 3025, 3779, 3991 |
| BseNI | ACTGG | 5 cut(s) | 1817, 1867, 1903, 3939, 4128 |
| BseRI | GAGGAG | 1 cut(s) | 233 |
| BseYI | CCCAGC | 2 cut(s) | 2870, 4171 |
| BsgI | GTGCAG | 6 cut(s) | 369, 1879, 2491, 2882, 3489, 4152 |
| BshFI | GGCC | 4 cut(s) | 77, 1173, 1349, 4253 |
| BshNI | GGYRCC | 1 cut(s) | 2033 |
| BshTI | ACCGGT | 1 cut(s) | 2344 |
| BsiHKAI | GWGCWC | 2 cut(s) | 3050, 3251 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2675, 3650 |
| BsiSI | CCGG | 2 cut(s) | 59, 2345 |
| BslFI | GGGAC | 4 cut(s) | 184, 2521, 3831, 4138 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 166, 1822, 1883, 2287, 2863, 3223, 3815, 3898 |
| BsmAI | GTCTC | 8 cut(s) | 286, 428, 677, 1080, 1289, 1938, 2667, 3323 |
| BsmBI | CGTCTC | 2 cut(s) | 428, 1289 |
| BsmFI | GGGAC | 4 cut(s) | 184, 2521, 3831, 4138 |
| BsmI | GAATGC | 1 cut(s) | 2636 |
| BsnI | GGCC | 4 cut(s) | 77, 1173, 1349, 4253 |
| Bso31I | GGTCTC | 2 cut(s) | 286, 3323 |
| BsoBI | CYCGRG | 2 cut(s) | 2675, 3650 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2021, 3050, 3251 |
| Bsp19I | CCATGG | 1 cut(s) | 1350 |
| BspANI | GGCC | 4 cut(s) | 77, 1173, 1349, 4253 |
| BspHI | TCATGA | 2 cut(s) | 1719, 3627 |
| BspLI | GGNNCC | 6 cut(s) | 66, 1164, 2035, 3819, 4126, 4302 |
| BspMAI | CTGCAG | 1 cut(s) | 2833 |
| BspMI | ACCTGC | 2 cut(s) | 2278, 4124 |
| BspPI | GGATC | 5 cut(s) | 1157, 1170, 1829, 1909, 3800 |
| BspT107I | GGYRCC | 1 cut(s) | 2033 |
| BspTNI | GGTCTC | 2 cut(s) | 286, 3323 |
| BsrDI | GCAATG | 5 cut(s) | 2652, 2841, 3025, 3779, 3991 |
| BsrFI | RCCGGY | 2 cut(s) | 58, 2344 |
| BsrI | ACTGG | 5 cut(s) | 1817, 1867, 1903, 3939, 4128 |
| BssAI | RCCGGY | 2 cut(s) | 58, 2344 |
| BssECI | CCNNGG | 7 cut(s) | 1350, 1753, 2846, 3313, 3543, 4021, 4254 |
| BssSI | CACGAG | 2 cut(s) | 1059, 1365 |
| BssT1I | CCWWGG | 6 cut(s) | 1350, 1753, 2846, 3313, 3543, 4021 |
| Bst2BI | CACGAG | 2 cut(s) | 1059, 1365 |
| Bst2UI | CCWGG | 4 cut(s) | 1167, 1711, 2858, 4256 |
| Bst6I | CTCTTC | 6 cut(s) | 110, 1203, 1337, 2210, 2363, 3340 |
| BstBAI | YACGTR | 1 cut(s) | 3577 |
| BstC8I | GCNNGC | 8 cut(s) | 234, 561, 810, 928, 1020, 1326, 1545, 2521 |
| BstDSI | CCRYGG | 1 cut(s) | 1350 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 164 |
| BstHHI | GCGC | 2 cut(s) | 92, 1647 |
| BstMAI | GTCTC | 8 cut(s) | 286, 428, 677, 1080, 1289, 1938, 2667, 3323 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 14, 64, 506, 755, 881, 1321, 1540, 2147, 2529 |
| BstNI | CCWGG | 4 cut(s) | 1167, 1711, 2858, 4256 |
| BstNSI | RCATGY | 7 cut(s) | 812, 1160, 1547, 1960, 3202, 3247, 3566 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3941 |
| BstSCI | CCNGG | 4 cut(s) | 1165, 1709, 2856, 4254 |
| BstSFI | CTRYAG | 3 cut(s) | 2635, 2829, 3762 |
| BstV2I | GAAGAC | 2 cut(s) | 2997, 4130 |
| BstX2I | RGATCY | 3 cut(s) | 1162, 1834, 1901 |
| BstYI | RGATCY | 3 cut(s) | 1162, 1834, 1901 |
| BsuI | GTATCC | 1 cut(s) | 1601 |
| BsuRI | GGCC | 4 cut(s) | 77, 1173, 1349, 4253 |
| BtgI | CCRYGG | 1 cut(s) | 1350 |
| BtsIMutI | CAGTG | 9 cut(s) | 758, 1896, 2157, 2985, 3050, 3258, 3869, 3946, 4135 |
| BveI | ACCTGC | 2 cut(s) | 2278, 4124 |
| Cac8I | GCNNGC | 8 cut(s) | 234, 561, 810, 928, 1020, 1326, 1545, 2521 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3713 |
| CciI | TCATGA | 2 cut(s) | 1719, 3627 |
| CfoI | GCGC | 2 cut(s) | 92, 1647 |
| Cfr10I | RCCGGY | 2 cut(s) | 58, 2344 |
| Cfr13I | GGNCC | 7 cut(s) | 1347, 1865, 2686, 3818, 3936, 4125, 4252 |
| Csp6I | GTAC | 3 cut(s) | 1986, 2174, 2460 |
| CspAI | ACCGGT | 1 cut(s) | 2344 |
| CviQI | GTAC | 3 cut(s) | 1986, 2174, 2460 |
| DraI | TTTAAA | 2 cut(s) | 1506, 2904 |
| DraIII | CACNNNGTG | 2 cut(s) | 3467, 3873 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3825 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3825 |
| EaeI | YGGCCR | 1 cut(s) | 1171 |
| Eam1104I | CTCTTC | 6 cut(s) | 110, 1203, 1337, 2210, 2363, 3340 |
| EarI | CTCTTC | 6 cut(s) | 110, 1203, 1337, 2210, 2363, 3340 |
| EciI | GGCGGA | 1 cut(s) | 599 |
| Eco130I | CCWWGG | 6 cut(s) | 1350, 1753, 2846, 3313, 3543, 4021 |
| Eco24I | GRGCYC | 1 cut(s) | 2021 |
| Eco31I | GGTCTC | 2 cut(s) | 286, 3323 |
| Eco32I | GATATC | 1 cut(s) | 2854 |
| Eco47I | GGWCC | 5 cut(s) | 1865, 2686, 3818, 3936, 4125 |
| Eco57I | CTGAAG | 7 cut(s) | 669, 774, 1350, 1538, 2898, 3009, 3572 |
| Eco88I | CYCGRG | 2 cut(s) | 2675, 3650 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 164 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2686, 3818 |
| EcoRI | GAATTC | 3 cut(s) | 193, 3716, 4079 |
| EcoRII | CCWGG | 4 cut(s) | 1165, 1709, 2856, 4254 |
| EcoRV | GATATC | 1 cut(s) | 2854 |
| EcoT14I | CCWWGG | 6 cut(s) | 1350, 1753, 2846, 3313, 3543, 4021 |
| EcoT22I | ATGCAT | 1 cut(s) | 3025 |
| EcoT38I | GRGCYC | 1 cut(s) | 2021 |
| ErhI | CCWWGG | 6 cut(s) | 1350, 1753, 2846, 3313, 3543, 4021 |
| Esp3I | CGTCTC | 2 cut(s) | 428, 1289 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 363, 395, 1610, 1642, 3099, 3131, 3793, 3825 |
| FaqI | GGGAC | 4 cut(s) | 184, 2521, 3831, 4138 |
| FauI | CCCGC | 2 cut(s) | 135, 2485 |
| FbaI | TGATCA | 2 cut(s) | 1630, 3478 |
| FblI | GTMKAC | 1 cut(s) | 2102 |
| FriOI | GRGCYC | 1 cut(s) | 2021 |
| FspBI | CTAG | 7 cut(s) | 1428, 1938, 2550, 2690, 3009, 3381, 4329 |
| GlaI | GCGC | 2 cut(s) | 91, 1646 |
| GsaI | CCCAGC | 2 cut(s) | 2874, 4175 |
| GsuI | CTGGAG | 2 cut(s) | 308, 1905 |
| HaeIII | GGCC | 4 cut(s) | 77, 1173, 1349, 4253 |
| HapII | CCGG | 2 cut(s) | 59, 2345 |
| HhaI | GCGC | 2 cut(s) | 92, 1647 |
| Hin6I | GCGC | 2 cut(s) | 90, 1645 |
| HinP1I | GCGC | 2 cut(s) | 90, 1645 |
| HincII | GTYRAC | 1 cut(s) | 4028 |
| HindII | GTYRAC | 1 cut(s) | 4028 |
| HindIII | AAGCTT | 3 cut(s) | 377, 935, 1016 |
| HpaII | CCGG | 2 cut(s) | 59, 2345 |
| HphI | GGTGA | 9 cut(s) | 1006, 1279, 1312, 1507, 1742, 2507, 2792, 3278, 4270 |
| Hpy166II | GTNNAC | 3 cut(s) | 2103, 2843, 4028 |
| Hpy8I | GTNNAC | 3 cut(s) | 2103, 2843, 4028 |
| HpyCH4IV | ACGT | 2 cut(s) | 3576, 4215 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 14, 64, 506, 755, 881, 1321, 1540, 2147, 2529 |
| HpySE526I | ACGT | 2 cut(s) | 3576, 4215 |
| HspAI | GCGC | 2 cut(s) | 90, 1645 |
| Ksp22I | TGATCA | 2 cut(s) | 1630, 3478 |
| LmnI | GCTCC | 8 cut(s) | 64, 430, 679, 1123, 3195, 3444, 3801, 3904 |
| LweI | GCATC | 8 cut(s) | 1454, 2000, 2224, 2857, 3032, 3742, 3923, 4237 |
| MaeI | CTAG | 7 cut(s) | 1428, 1938, 2550, 2690, 3009, 3381, 4329 |
| MaeII | ACGT | 2 cut(s) | 3576, 4215 |
| MfeI | CAATTG | 3 cut(s) | 602, 1082, 2247 |
| MflI | RGATCY | 3 cut(s) | 1162, 1834, 1901 |
| MhlI | GDGCHC | 3 cut(s) | 2021, 3050, 3251 |
| MlsI | TGGCCA | 1 cut(s) | 1173 |
| MluNI | TGGCCA | 1 cut(s) | 1173 |
| MlyI | GAGTC | 5 cut(s) | 1283, 1940, 2252, 3218, 3835 |
| MmeI | TCCRAC | 6 cut(s) | 48, 834, 1602, 2118, 3237, 3942 |
| Mox20I | TGGCCA | 1 cut(s) | 1173 |
| Mph1103I | ATGCAT | 1 cut(s) | 3025 |
| MroXI | GAANNNNTTC | 4 cut(s) | 180, 3114, 3593, 3951 |
| MscI | TGGCCA | 1 cut(s) | 1173 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1652, 4166 |
| Msp20I | TGGCCA | 1 cut(s) | 1173 |
| MspA1I | CMGCKG | 3 cut(s) | 1516, 3425, 3961 |
| MspI | CCGG | 2 cut(s) | 59, 2345 |
| MspR9I | CCNGG | 4 cut(s) | 1167, 1711, 2858, 4256 |
| MunI | CAATTG | 3 cut(s) | 602, 1082, 2247 |
| Mva1269I | GAATGC | 1 cut(s) | 2636 |
| MvaI | CCWGG | 4 cut(s) | 1167, 1711, 2858, 4256 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 14, 64, 506, 755, 881, 1321, 1540, 2147, 2529 |
| NcoI | CCATGG | 1 cut(s) | 1350 |
| NlaIV | GGNNCC | 6 cut(s) | 66, 1164, 2035, 3819, 4126, 4302 |
| NmeAIII | GCCGAG | 1 cut(s) | 1363 |
| NmuCI | GTSAC | 6 cut(s) | 2747, 2789, 3374, 3619, 4115, 4159 |
| NsiI | ATGCAT | 1 cut(s) | 3025 |
| NspI | RCATGY | 7 cut(s) | 812, 1160, 1547, 1960, 3202, 3247, 3566 |
| PaeI | GCATGC | 2 cut(s) | 812, 1547 |
| PaeR7I | CTCGAG | 1 cut(s) | 3650 |
| PagI | TCATGA | 2 cut(s) | 1719, 3627 |
| PciI | ACATGT | 2 cut(s) | 1956, 3243 |
| PctI | GAATGC | 1 cut(s) | 2636 |
| PdmI | GAANNNNTTC | 4 cut(s) | 180, 3114, 3593, 3951 |
| PinAI | ACCGGT | 1 cut(s) | 2344 |
| PleI | GAGTC | 5 cut(s) | 1283, 1939, 2251, 3217, 3834 |
| PpsI | GAGTC | 5 cut(s) | 1283, 1939, 2251, 3217, 3834 |
| Ppu21I | YACGTR | 1 cut(s) | 3577 |
| PpuMI | RGGWCCY | 2 cut(s) | 2686, 3818 |
| PscI | ACATGT | 2 cut(s) | 1956, 3243 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3941 |
| Psp5II | RGGWCCY | 2 cut(s) | 2686, 3818 |
| Psp6I | CCWGG | 4 cut(s) | 1165, 1709, 2856, 4254 |
| PspFI | CCCAGC | 2 cut(s) | 2870, 4171 |
| PspGI | CCWGG | 4 cut(s) | 1165, 1709, 2856, 4254 |
| PspN4I | GGNNCC | 6 cut(s) | 66, 1164, 2035, 3819, 4126, 4302 |
| PspPI | GGNCC | 7 cut(s) | 1347, 1865, 2686, 3818, 3936, 4125, 4252 |
| PspPPI | RGGWCCY | 2 cut(s) | 2686, 3818 |
| PstI | CTGCAG | 1 cut(s) | 2833 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3713 |
| PsuI | RGATCY | 3 cut(s) | 1162, 1834, 1901 |
| PvuII | CAGCTG | 2 cut(s) | 1516, 3961 |
| RsaI | GTAC | 3 cut(s) | 1987, 2175, 2461 |
| RsaNI | GTAC | 3 cut(s) | 1986, 2174, 2460 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1652, 4166 |
| Sau96I | GGNCC | 7 cut(s) | 1347, 1865, 2686, 3818, 3936, 4125, 4252 |
| SchI | GAGTC | 5 cut(s) | 1283, 1940, 2252, 3218, 3835 |
| ScrFI | CCNGG | 4 cut(s) | 1167, 1711, 2858, 4256 |
| SduI | GDGCHC | 3 cut(s) | 2021, 3050, 3251 |
| SfaNI | GCATC | 8 cut(s) | 1454, 2000, 2224, 2857, 3032, 3742, 3923, 4237 |
| SfcI | CTRYAG | 3 cut(s) | 2635, 2829, 3762 |
| Sfr274I | CTCGAG | 1 cut(s) | 3650 |
| SinI | GGWCC | 5 cut(s) | 1865, 2686, 3818, 3936, 4125 |
| SlaI | CTCGAG | 1 cut(s) | 3650 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1652, 4166 |
| SmlI | CTYRAG | 7 cut(s) | 203, 329, 425, 674, 2960, 3650, 4084 |
| SmoI | CTYRAG | 7 cut(s) | 203, 329, 425, 674, 2960, 3650, 4084 |
| SpeI | ACTAGT | 1 cut(s) | 2549 |
| SphI | GCATGC | 2 cut(s) | 812, 1547 |
| SspI | AATATT | 3 cut(s) | 568, 817, 2956 |
| SspMI | CTAG | 7 cut(s) | 1428, 1938, 2550, 2690, 3009, 3381, 4329 |
| StyD4I | CCNGG | 4 cut(s) | 1165, 1709, 2856, 4254 |
| StyI | CCWWGG | 6 cut(s) | 1350, 1753, 2846, 3313, 3543, 4021 |
| TaiI | ACGT | 2 cut(s) | 3579, 4218 |
| TaqI | TCGA | 7 cut(s) | 918, 1440, 2544, 3238, 3354, 3651, 3945 |
| TaqII | GACCGA | 1 cut(s) | 4216 |
| TatI | WGTACW | 1 cut(s) | 1985 |
| TauI | GCSGC | 3 cut(s) | 50, 275, 4253 |
| TscAI | CASTG | 9 cut(s) | 765, 1903, 2164, 2992, 3050, 3258, 3876, 3946, 4135 |
| TseFI | GTSAC | 6 cut(s) | 2747, 2789, 3374, 3619, 4115, 4159 |
| Tsp45I | GTSAC | 6 cut(s) | 2747, 2789, 3374, 3619, 4115, 4159 |
| TspGWI | ACGGA | 4 cut(s) | 145, 188, 3160, 3714 |
| TspRI | CASTG | 9 cut(s) | 765, 1903, 2164, 2992, 3050, 3258, 3876, 3946, 4135 |
| VpaK11BI | GGWCC | 5 cut(s) | 1865, 2686, 3818, 3936, 4125 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 164 |
| XceI | RCATGY | 7 cut(s) | 812, 1160, 1547, 1960, 3202, 3247, 3566 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3220 |
| XhoI | CTCGAG | 1 cut(s) | 3650 |
| XmiI | GTMKAC | 1 cut(s) | 2102 |
| XmnI | GAANNNNTTC | 4 cut(s) | 180, 3114, 3593, 3951 |
| XspI | CTAG | 7 cut(s) | 1428, 1938, 2550, 2690, 3009, 3381, 4329 |
| Zsp2I | ATGCAT | 1 cut(s) | 3025 |