AT2G35035

UreD urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016189
Physical Location & Seq
Reverse (-)
14763178 .. 14765079
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35035.2

Sequence Viewer

Length: 885 bp
ATGGCGACAGGGAAAGTGGTGGTGGAGAAAGTGGGAGGAAGATCTACAGCTACGAGCTGCTTCTCGAAGTATCCTCTCAAGTTCTTACTTCCTAGCAAGGCAGCTCCTGCTGGAACTGACGTTGTCTGGATTTACAGTATCACTTATGGTGGCGGCATTGTCTCTGGCGATTCGATTTCATGTGAATTCACAATTGGTGATGGATGCACTGCAGTTATTACAACGCAGTCTTCTACTAAGGTGTACAAGGCAATAGGATCAAAGTGTTCTGAACAGATATTGGAAGCGAGAATCGGGAGTGAAGCTCTTTTGGTTGTGATACCAGATCCAGTGACTTGCTTCTCCACTGCCCGGTACTATCAGAAACAGATCTTTAGATTGCTTTCAGATTCCAATCTGGTCCTTGTGGATTGGATCACAAGCGGGCGTCACGCTAATGGCGAAAAATGGGATTTCGAGTTTTATAAGAGCATCAACAACGTCTACCTGGAAGATGATCACCCTTTATTCCTTGACACAGTGCTACTAGAGAAGAGGAGCATCCAAAGCATAGCCGAACGGATGCAAGACTATCAAGCTATAGCAATGGTCATACTCTTCGGGGCAAAGCTGAAGGAAATCCAAAAGCAAGTCCAAGAAAATGTGAAAAACATGATGTCAGAACAATTACAGCTCTCTTATAGTTCTCGGAGACACAAGTCTGAGTCAAGCTCTCGTAATCGCTTCATGAAACCAGAGTTTATAGCTTCCTGTAGCACTTTCGGCCCTGAGGGAAAGGGAGTTGTGGTTAGAATAGCTTCGGATTCTACAGAGTCTGTCTACAATTTTTTGAGGCAACAATTGGCTGAGCTTGAACCAGTTCTTGGTCAAGCTCCTTATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreD

Protein Analysis

294

Amino Acids

32.61

Weight (kDa)

7.55

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreD PF01774 45 - 80 2.9e-09 UreD urease accessory protein
UreD PF01774 99 - 230 1.8e-16 UreD urease accessory protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35035 AT2G35035
fragaria_vesca FvH4_3g12650
malus_domestica MD10G1229500.v1.1
prunus_persica Prupe.4G115300_v2.0.a1
pyrus_communis pycom10g19300
rosa_chinensis RchiOBHm_Chr5g0020621
rosa_laevigata RLG00000032544
rosa_multiflora Rmu_sc0005607.1_g000014
rosa_roxburghii Rroxscaffold_1G00057670
rosa_rugosa Rorug05G0061900 Rorug05G0062000
rosa_samantha Rh5AG151700 Rh5BG151300
rosa_wichuraiana Rw5G013440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AccB7I CCANNNNNTGG 1 cut(s) 863
AccI GTMKAC 2 cut(s) 483, 819
AciI CCGC 2 cut(s) 153, 423
AclWI GGATC 3 cut(s) 265, 320, 422
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 632
AcyI GRCGYC 1 cut(s) 427
AfaI GTAC 2 cut(s) 245, 356
AfiI CCNNNNNNNGG 2 cut(s) 351, 863
AgsI TTSAA 1 cut(s) 854
AjnI CCWGG 1 cut(s) 486
AjuI GAANNNNNNNTTGG 4 cut(s) 177, 209, 846, 878
Alw26I GTCTC 2 cut(s) 166, 685
AlwI GGATC 3 cut(s) 265, 320, 422
AlwNI CAGNNNCTG 2 cut(s) 107, 815
AoxI GGCC 1 cut(s) 763
ApeKI GCWGC 2 cut(s) 57, 101
ApoI RAATTY 1 cut(s) 185
Asp700I GAANNNNTTC 2 cut(s) 796, 858
AspS9I GGNCC 2 cut(s) 400, 764
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 209, 491
AvaII GGWCC 1 cut(s) 400
AxyI CCTNAGG 1 cut(s) 768
BbsI GAAGAC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 44, 113
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 488
BciVI GTATCC 1 cut(s) 81
BclI TGATCA 1 cut(s) 496
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 2 cut(s) 166, 685
BfaI CTAG 2 cut(s) 93, 527
BfmI CTRYAG 5 cut(s) 45, 210, 579, 751, 807
BfuI GTATCC 1 cut(s) 81
BglII AGATCT 2 cut(s) 41, 369
BisI GCNGC 3 cut(s) 58, 102, 154
BlpI GCTNAGC 1 cut(s) 846
BlsI GCNGC 3 cut(s) 59, 103, 155
Bme1390I CCNGG 2 cut(s) 352, 488
Bme18I GGWCC 1 cut(s) 400
BmgT120I GGNCC 2 cut(s) 400, 764
BmrFI CCNGG 2 cut(s) 352, 488
BmsI GCATC 4 cut(s) 194, 480, 549, 552
BoxI GACNNNNGTC 1 cut(s) 697
BpiI GAAGAC 1 cut(s) 222
BplI GAGNNNNNCTC 4 cut(s) 289, 321, 695, 727
Bpu1102I GCTNAGC 1 cut(s) 846
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 352
BsaBI GATNNNNATC 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 427
BsaXI ACNNNNNCTCC 2 cut(s) 771, 801
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 863
Bse1I ACTGG 2 cut(s) 329, 857
Bse21I CCTNAGG 1 cut(s) 768
Bse3DI GCAATG 1 cut(s) 591
Bse8I GATNNNNATC 1 cut(s) 393
BseBI CCWGG 1 cut(s) 488
BseGI GGATG 3 cut(s) 209, 540, 567
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 351, 863
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 3 cut(s) 693, 759, 837
BseNI ACTGG 2 cut(s) 329, 857
BseRI GAGGAG 1 cut(s) 550
BseXI GCAGC 2 cut(s) 44, 113
BshFI GGCC 1 cut(s) 765
BsiSI CCGG 1 cut(s) 352
BslI CCNNNNNNNGG 2 cut(s) 351, 863
BsmAI GTCTC 2 cut(s) 166, 685
BsnI GGCC 1 cut(s) 765
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 6 cut(s) 41, 257, 325, 369, 414, 496
Bsp1720I GCTNAGC 1 cut(s) 846
BspACI CCGC 2 cut(s) 153, 423
BspANI GGCC 1 cut(s) 765
BspCNI CTCAG 3 cut(s) 694, 760, 838
BspHI TCATGA 1 cut(s) 726
BspMAI CTGCAG 1 cut(s) 214
BspPI GGATC 3 cut(s) 265, 320, 422
BsrDI GCAATG 1 cut(s) 591
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 2 cut(s) 329, 857
BssMI GATC 6 cut(s) 41, 257, 325, 369, 414, 496
BssNI GRCGYC 1 cut(s) 427
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 2 cut(s) 137, 520
Bst6I CTCTTC 2 cut(s) 527, 602
BstACI GRCGYC 1 cut(s) 427
BstAPI GCANNNNNTGC 1 cut(s) 107
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 425
BstDEI CTNAG 4 cut(s) 237, 702, 768, 846
BstF5I GGATG 3 cut(s) 209, 540, 567
BstKTI GATC 6 cut(s) 44, 260, 328, 372, 417, 499
BstMAI GTCTC 2 cut(s) 166, 685
BstMBI GATC 6 cut(s) 41, 257, 325, 369, 414, 496
BstMWI GCNNNNNNNGC 4 cut(s) 107, 546, 762, 878
BstNI CCWGG 1 cut(s) 488
BstPAI GACNNNNGTC 1 cut(s) 697
BstSCI CCNGG 2 cut(s) 350, 486
BstSFI CTRYAG 5 cut(s) 45, 210, 579, 751, 807
BstV1I GCAGC 2 cut(s) 44, 113
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 3 cut(s) 41, 325, 369
BstYI RGATCY 3 cut(s) 41, 325, 369
Bsu36I CCTNAGG 1 cut(s) 768
BsuI GTATCC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 765
BtsCI GGATG 3 cut(s) 209, 540, 567
BtsI GCAGTG 2 cut(s) 207, 345
BtsIMutI CAGTG 4 cut(s) 207, 336, 345, 525
Cac8I GCNNGC 1 cut(s) 425
CaiI CAGNNNCTG 2 cut(s) 107, 815
CciI TCATGA 1 cut(s) 726
Cfr13I GGNCC 2 cut(s) 400, 764
CseI GACGC 1 cut(s) 416
Csp6I GTAC 2 cut(s) 244, 355
CviAII CATG 3 cut(s) 180, 652, 727
CviQI GTAC 2 cut(s) 244, 355
DdeI CTNAG 4 cut(s) 237, 702, 768, 846
DpnI GATC 6 cut(s) 43, 259, 327, 371, 416, 498
DpnII GATC 6 cut(s) 41, 257, 325, 369, 414, 496
Eam1104I CTCTTC 2 cut(s) 527, 602
EarI CTCTTC 2 cut(s) 527, 602
Eco47I GGWCC 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 632
Eco81I CCTNAGG 1 cut(s) 768
EcoRI GAATTC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 486
FaeI CATG 3 cut(s) 183, 655, 730
FatI CATG 3 cut(s) 179, 651, 726
FauI CCCGC 1 cut(s) 416
FbaI TGATCA 1 cut(s) 496
FblI GTMKAC 2 cut(s) 483, 819
Fnu4HI GCNGC 3 cut(s) 58, 102, 154
FokI GGATG 3 cut(s) 216, 527, 574
Fsp4HI GCNGC 3 cut(s) 58, 102, 154
FspBI CTAG 2 cut(s) 93, 527
GluI GCNGC 3 cut(s) 58, 102, 154
HaeIII GGCC 1 cut(s) 765
HapII CCGG 1 cut(s) 352
HgaI GACGC 1 cut(s) 416
Hin1I GRCGYC 1 cut(s) 427
Hin1II CATG 3 cut(s) 183, 655, 730
HinfI GANTC 6 cut(s) 170, 291, 389, 704, 803, 812
HpaII CCGG 1 cut(s) 352
HphI GGTGA 2 cut(s) 209, 491
Hpy166II GTNNAC 3 cut(s) 244, 484, 820
Hpy188I TCNGA 7 cut(s) 271, 363, 388, 661, 690, 703, 802
Hpy188III TCNNGA 4 cut(s) 64, 127, 295, 727
Hpy8I GTNNAC 3 cut(s) 244, 484, 820
HpyAV CCTTC 1 cut(s) 607
HpyCH4III ACNGT 2 cut(s) 137, 520
HpyCH4IV ACGT 2 cut(s) 120, 480
HpyCH4V TGCA 3 cut(s) 207, 212, 565
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 546, 762, 878
HpyF3I CTNAG 4 cut(s) 237, 702, 768, 846
HpySE526I ACGT 2 cut(s) 120, 480
Hsp92I GRCGYC 1 cut(s) 427
Hsp92II CATG 3 cut(s) 183, 655, 730
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 6 cut(s) 41, 257, 325, 369, 414, 496
LmnI GCTCC 3 cut(s) 109, 537, 877
Lsp1109I GCAGC 2 cut(s) 44, 113
LweI GCATC 4 cut(s) 194, 480, 549, 552
MaeI CTAG 2 cut(s) 93, 527
MaeII ACGT 2 cut(s) 120, 480
MaeIII GTNAC 2 cut(s) 331, 428
MalI GATC 6 cut(s) 43, 259, 327, 371, 416, 498
MboI GATC 6 cut(s) 41, 257, 325, 369, 414, 496
MboII GAAGA 5 cut(s) 51, 222, 503, 544, 589
MfeI CAATTG 2 cut(s) 192, 839
MflI RGATCY 3 cut(s) 41, 325, 369
MluCI AATT 5 cut(s) 185, 192, 665, 823, 839
MlyI GAGTC 2 cut(s) 713, 821
MnlI CCTC 5 cut(s) 29, 84, 528, 763, 825
MroXI GAANNNNTTC 2 cut(s) 796, 858
MslI CAYNNNNRTG 1 cut(s) 435
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 2 cut(s) 352, 488
MunI CAATTG 2 cut(s) 192, 839
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 4 cut(s) 107, 546, 762, 878
NciI CCSGG 1 cut(s) 352
NdeII GATC 6 cut(s) 41, 257, 325, 369, 414, 496
NlaIII CATG 3 cut(s) 183, 655, 730
NmuCI GTSAC 2 cut(s) 331, 428
PagI TCATGA 1 cut(s) 726
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PdmI GAANNNNTTC 2 cut(s) 796, 858
PfeI GAWTC 4 cut(s) 170, 291, 389, 803
PflFI GACNNNGTC 1 cut(s) 122
PflMI CCANNNNNTGG 1 cut(s) 863
PkrI GCNGC 3 cut(s) 59, 103, 155
PleI GAGTC 2 cut(s) 712, 820
PpsI GAGTC 2 cut(s) 712, 820
PshAI GACNNNNGTC 1 cut(s) 697
PsiI TTATAA 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 486
PspGI CCWGG 1 cut(s) 486
PspPI GGNCC 2 cut(s) 400, 764
PstI CTGCAG 1 cut(s) 214
PstNI CAGNNNCTG 2 cut(s) 107, 815
PsuI RGATCY 3 cut(s) 41, 325, 369
PsyI GACNNNGTC 1 cut(s) 122
RsaI GTAC 2 cut(s) 245, 356
RsaNI GTAC 2 cut(s) 244, 355
RseI CAYNNNNRTG 1 cut(s) 435
SatI GCNGC 3 cut(s) 58, 102, 154
Sau3AI GATC 6 cut(s) 41, 257, 325, 369, 414, 496
Sau96I GGNCC 2 cut(s) 400, 764
SchI GAGTC 2 cut(s) 713, 821
ScrFI CCNGG 2 cut(s) 352, 488
SfaNI GCATC 4 cut(s) 194, 480, 549, 552
SfcI CTRYAG 5 cut(s) 45, 210, 579, 751, 807
SinI GGWCC 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 5 cut(s) 185, 192, 665, 823, 839
SsiI CCGC 2 cut(s) 153, 423
SspMI CTAG 2 cut(s) 93, 527
StyD4I CCNGG 2 cut(s) 350, 486
TaaI ACNGT 2 cut(s) 137, 520
TaiI ACGT 2 cut(s) 123, 483
TaqI TCGA 3 cut(s) 65, 173, 456
TasI AATT 5 cut(s) 185, 192, 665, 823, 839
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 4 cut(s) 170, 291, 389, 803
TscAI CASTG 4 cut(s) 214, 336, 352, 525
TseFI GTSAC 2 cut(s) 331, 428
TseI GCWGC 2 cut(s) 57, 101
Tsp45I GTSAC 2 cut(s) 331, 428
TspDTI ATGAA 3 cut(s) 168, 715, 743
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 4 cut(s) 214, 336, 352, 525
Tth111I GACNNNGTC 1 cut(s) 122
Van91I CCANNNNNTGG 1 cut(s) 863
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 1 cut(s) 185
XmiI GTMKAC 2 cut(s) 483, 819
XmnI GAANNNNTTC 2 cut(s) 796, 858
XspI CTAG 2 cut(s) 93, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.