Prupe.4G115300_v2.0.a1

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016189
Physical Location & Seq
Forward (+)
6200370 .. 6203549
3180 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G115300.2

Sequence Viewer

Length: 888 bp
ATGGAAAAACAGGGAAGGGTGGTGGTTGATAAAGTGGGAGGGAGGTCAACAGTGACAAGATGCTTCTCAAAGTATCCTCTCAAGTTTATAATTCCCAGAAAGGTGGGTTCCTCTGAAACTGATGCTGTTTGGGTTTACACCCTCACCTATGGTGGTGGCATTGTCTCTGGAGATTCTGTTTCATGTGAATTTACCATTGGAGATGGTTGCACCACTGTCTTAACAACCCAAGCTTCCACTAAGGTCTACAAGTCTGTGGGATCAAAGTGCTGTGAGCAAGTCTTGGAGGCAAGAGTTGGGAGCGATGCCCTTTTGGCTGTCATTCCAGATCCGGTGACATGTTTCTCCACGGCAAGGTACTCTCAGAAACAAGTCTTTAGGGTAGCCTCTAACTCAAGTTTGGTCATTGTTGATTGGATTACCAGTGGGCGTCATGAAAGTGGAGAAAAATGGGATTTTGATCTTTATAAGAGTGCCAACCACATATTTATAGAAGATGATGAGCCCTTGTTTCTTGACATGGTGCACCTGGAGCGTGGAAGTGTTTCTTCGATTGCAGAACGCATGCAGGACTACCAAGTCATTGCAATGGTTGTACTCTTGGGGCCAAGGATCAAGCACATTCAAAACCTAGTTCAAGAAAATGTGAAGAGGATGATGTCTGAGCAATTACAGATTCCTTCCACTGCCTCTGGTCGTCAATTAAAACCAAATTCTGATAATCGCTTCACCAAACCAAGCTTTATTGCTTCTTCAAGTGTTTTTGGTCCTAAGGGAATAGGGGTGGTTGTTCGTATAGCTGCCACAACAACTGAATCAGTTTACAAGTTCCTGCAGCATCAATTGGCGGGCTTGGAGCCACTACTTGGGGTATCACCATATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreD

Protein Analysis

296

Amino Acids

32.45

Weight (kDa)

8.45

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35035 AT2G35035
fragaria_vesca FvH4_3g12650
malus_domestica MD10G1229500.v1.1
prunus_persica Prupe.4G115300_v2.0.a1
pyrus_communis pycom10g19300
rosa_chinensis RchiOBHm_Chr5g0020621
rosa_laevigata RLG00000032544
rosa_multiflora Rmu_sc0005607.1_g000014
rosa_roxburghii Rroxscaffold_1G00057670
rosa_rugosa Rorug05G0061900 Rorug05G0062000
rosa_samantha Rh5AG151700 Rh5BG151300
rosa_wichuraiana Rw5G013440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 89, 468
AasI GACNNNNNNGTC 1 cut(s) 578
AccB7I CCANNNNNTGG 1 cut(s) 866
AccI GTMKAC 1 cut(s) 246
AciI CCGC 1 cut(s) 848
AclWI GGATC 3 cut(s) 268, 323, 620
AcsI RAATTY 2 cut(s) 188, 712
AcyI GRCGYC 1 cut(s) 430
AfaI GTAC 2 cut(s) 359, 597
AfiI CCNNNNNNNGG 2 cut(s) 354, 866
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 3 cut(s) 626, 638, 756
AjnI CCWGG 1 cut(s) 528
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 3 cut(s) 233, 741, 800
AluI AGCT 3 cut(s) 233, 741, 800
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 1 cut(s) 169
Alw44I GTGCAC 1 cut(s) 524
AlwI GGATC 3 cut(s) 268, 323, 620
AoxI GGCC 1 cut(s) 605
ApaLI GTGCAC 1 cut(s) 524
ApeKI GCWGC 2 cut(s) 800, 835
ApoI RAATTY 2 cut(s) 188, 712
Asp700I GAANNNNTTC 1 cut(s) 544
AspS9I GGNCC 2 cut(s) 605, 767
AsuHPI GGTGA 4 cut(s) 136, 346, 721, 867
AvaII GGWCC 1 cut(s) 767
AxyI CCTNAGG 1 cut(s) 771
BaeGI GKGCMC 1 cut(s) 528
BanII GRGCYC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 2 cut(s) 787, 847
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 366
BciT130I CCWGG 1 cut(s) 530
BciVI GTATCC 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 1 cut(s) 833
BfuI GTATCC 1 cut(s) 84
BglI GCCNNNNNGGC 1 cut(s) 314
BisI GCNGC 2 cut(s) 801, 836
BlsI GCNGC 2 cut(s) 802, 837
Bme1390I CCNGG 1 cut(s) 530
Bme18I GGWCC 1 cut(s) 767
BmgT120I GGNCC 2 cut(s) 605, 767
BmiI GGNNCC 3 cut(s) 109, 606, 858
BmrFI CCNGG 1 cut(s) 530
BmsI GCATC 4 cut(s) 50, 112, 295, 847
BpmI CTGGAG 2 cut(s) 189, 551
BpuEI CTTGAG 2 cut(s) 65, 379
BsaBI GATNNNNATC 1 cut(s) 459
BsaHI GRCGYC 1 cut(s) 430
BsaJI CCNNGG 2 cut(s) 348, 608
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 866
Bse1I ACTGG 1 cut(s) 423
Bse21I CCTNAGG 1 cut(s) 771
Bse3DI GCAATG 2 cut(s) 582, 594
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 1 cut(s) 530
BseDI CCNNGG 2 cut(s) 348, 608
BseGI GGATG 1 cut(s) 660
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 2 cut(s) 354, 866
BseMI GCAATG 2 cut(s) 582, 594
BseMII CTCAG 2 cut(s) 377, 654
BseNI ACTGG 1 cut(s) 423
BseSI GKGCMC 1 cut(s) 528
BseXI GCAGC 2 cut(s) 787, 847
BshFI GGCC 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 528
BsiSI CCGG 1 cut(s) 332
BslI CCNNNNNNNGG 2 cut(s) 354, 866
BsmAI GTCTC 1 cut(s) 169
BsnI GGCC 1 cut(s) 607
Bsp1286I GDGCHC 2 cut(s) 507, 528
Bsp143I GATC 4 cut(s) 260, 328, 460, 612
BspACI CCGC 1 cut(s) 848
BspANI GGCC 1 cut(s) 607
BspCNI CTCAG 2 cut(s) 376, 655
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 109, 606, 858
BspMAI CTGCAG 1 cut(s) 837
BspPI GGATC 3 cut(s) 268, 323, 620
BsrDI GCAATG 2 cut(s) 582, 594
BsrI ACTGG 1 cut(s) 423
BssECI CCNNGG 2 cut(s) 348, 608
BssMI GATC 4 cut(s) 260, 328, 460, 612
BssNI GRCGYC 1 cut(s) 430
BssT1I CCWWGG 1 cut(s) 608
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 2 cut(s) 52, 217
Bst6I CTCTTC 1 cut(s) 644
BstACI GRCGYC 1 cut(s) 430
BstC8I GCNNGC 2 cut(s) 566, 850
BstDEI CTNAG 4 cut(s) 240, 363, 663, 771
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 660
BstKTI GATC 4 cut(s) 263, 331, 463, 615
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 4 cut(s) 260, 328, 460, 612
BstMWI GCNNNNNNNGC 2 cut(s) 314, 532
BstNI CCWGG 1 cut(s) 530
BstNSI RCATGY 2 cut(s) 342, 568
BstSCI CCNGG 1 cut(s) 528
BstSFI CTRYAG 1 cut(s) 833
BstSLI GKGCMC 1 cut(s) 528
BstV1I GCAGC 2 cut(s) 787, 847
BstX2I RGATCY 1 cut(s) 328
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 328
Bsu36I CCTNAGG 1 cut(s) 771
BsuI GTATCC 1 cut(s) 84
BsuRI GGCC 1 cut(s) 607
BtgI CCRYGG 1 cut(s) 348
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 1 cut(s) 660
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 4 cut(s) 57, 213, 430, 684
Cac8I GCNNGC 2 cut(s) 566, 850
CciI TCATGA 1 cut(s) 433
Cfr13I GGNCC 2 cut(s) 605, 767
CseI GACGC 1 cut(s) 419
Csp6I GTAC 2 cut(s) 358, 596
CviAII CATG 5 cut(s) 183, 339, 434, 520, 565
CviJI RGCY 9 cut(s) 233, 317, 386, 505, 607, 741, 800, 852, 859
CviKI_1 RGCY 9 cut(s) 233, 317, 386, 505, 607, 741, 800, 852, 859
CviQI GTAC 2 cut(s) 358, 596
DdeI CTNAG 4 cut(s) 240, 363, 663, 771
DpnI GATC 4 cut(s) 262, 330, 462, 614
DpnII GATC 4 cut(s) 260, 328, 460, 612
DrdI GACNNNNNNGTC 1 cut(s) 578
DseDI GACNNNNNNGTC 1 cut(s) 578
Eam1104I CTCTTC 1 cut(s) 644
EarI CTCTTC 1 cut(s) 644
Eco130I CCWWGG 1 cut(s) 608
Eco24I GRGCYC 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 767
Eco81I CCTNAGG 1 cut(s) 771
EcoRII CCWGG 1 cut(s) 528
EcoT14I CCWWGG 1 cut(s) 608
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 5 cut(s) 186, 342, 437, 523, 568
FalI AAGNNNNNCTT 2 cut(s) 532, 564
FatI CATG 5 cut(s) 182, 338, 433, 519, 564
FauI CCCGC 1 cut(s) 841
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 801, 836
FokI GGATG 1 cut(s) 667
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 2 cut(s) 801, 836
FspBI CTAG 1 cut(s) 632
GluI GCNGC 2 cut(s) 801, 836
GsuI CTGGAG 2 cut(s) 189, 551
HaeIII GGCC 1 cut(s) 607
HapII CCGG 1 cut(s) 332
HgaI GACGC 1 cut(s) 419
Hin1I GRCGYC 1 cut(s) 430
Hin1II CATG 5 cut(s) 186, 342, 437, 523, 568
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HindIII AAGCTT 2 cut(s) 231, 739
HinfI GANTC 3 cut(s) 173, 676, 815
HpaII CCGG 1 cut(s) 332
HphI GGTGA 4 cut(s) 136, 346, 721, 867
Hpy166II GTNNAC 5 cut(s) 48, 136, 247, 526, 823
Hpy188I TCNGA 4 cut(s) 115, 366, 664, 718
Hpy188III TCNNGA 5 cut(s) 168, 326, 434, 515, 638
Hpy8I GTNNAC 5 cut(s) 48, 136, 247, 526, 823
HpyAV CCTTC 2 cut(s) 9, 690
HpyCH4III ACNGT 2 cut(s) 52, 217
HpyCH4V TGCA 6 cut(s) 210, 526, 557, 568, 587, 835
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 532
HpyF3I CTNAG 4 cut(s) 240, 363, 663, 771
Hsp92I GRCGYC 1 cut(s) 430
Hsp92II CATG 5 cut(s) 186, 342, 437, 523, 568
Kzo9I GATC 4 cut(s) 260, 328, 460, 612
LmnI GCTCC 3 cut(s) 300, 532, 856
Lsp1109I GCAGC 2 cut(s) 787, 847
LweI GCATC 4 cut(s) 50, 112, 295, 847
MaeI CTAG 1 cut(s) 632
MaeIII GTNAC 2 cut(s) 52, 334
MalI GATC 4 cut(s) 262, 330, 462, 614
MboI GATC 4 cut(s) 260, 328, 460, 612
MboII GAAGA 4 cut(s) 506, 540, 661, 744
MfeI CAATTG 1 cut(s) 842
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 507, 528
MluCI AATT 6 cut(s) 90, 188, 668, 701, 712, 842
MnlI CCTC 9 cut(s) 32, 36, 87, 121, 152, 280, 397, 645, 700
MroXI GAANNNNTTC 1 cut(s) 544
MseI TTAA 2 cut(s) 221, 704
MslI CAYNNNNRTG 2 cut(s) 438, 587
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 1 cut(s) 530
MunI CAATTG 1 cut(s) 842
MvaI CCWGG 1 cut(s) 530
MwoI GCNNNNNNNGC 2 cut(s) 314, 532
NdeII GATC 4 cut(s) 260, 328, 460, 612
NlaIII CATG 5 cut(s) 186, 342, 437, 523, 568
NlaIV GGNNCC 3 cut(s) 109, 606, 858
NmuCI GTSAC 2 cut(s) 52, 334
NspI RCATGY 2 cut(s) 342, 568
PaeI GCATGC 1 cut(s) 568
PagI TCATGA 1 cut(s) 433
PciI ACATGT 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 544
PfeI GAWTC 3 cut(s) 173, 676, 815
PflMI CCANNNNNTGG 1 cut(s) 866
PkrI GCNGC 2 cut(s) 802, 837
PscI ACATGT 1 cut(s) 338
PsiI TTATAA 2 cut(s) 89, 468
Psp6I CCWGG 1 cut(s) 528
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 3 cut(s) 109, 606, 858
PspPI GGNCC 2 cut(s) 605, 767
PstI CTGCAG 1 cut(s) 837
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 2 cut(s) 359, 597
RsaNI GTAC 2 cut(s) 358, 596
RseI CAYNNNNRTG 2 cut(s) 438, 587
SaqAI TTAA 2 cut(s) 221, 704
SatI GCNGC 2 cut(s) 801, 836
Sau3AI GATC 4 cut(s) 260, 328, 460, 612
Sau96I GGNCC 2 cut(s) 605, 767
ScrFI CCNGG 1 cut(s) 530
SduI GDGCHC 2 cut(s) 507, 528
SfaNI GCATC 4 cut(s) 50, 112, 295, 847
SfcI CTRYAG 1 cut(s) 833
SinI GGWCC 1 cut(s) 767
SmiMI CAYNNNNRTG 2 cut(s) 438, 587
SmlI CTYRAG 2 cut(s) 80, 394
SmoI CTYRAG 2 cut(s) 80, 394
SphI GCATGC 1 cut(s) 568
Sse9I AATT 6 cut(s) 90, 188, 668, 701, 712, 842
SsiI CCGC 1 cut(s) 848
SspMI CTAG 1 cut(s) 632
StyD4I CCNGG 1 cut(s) 528
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 2 cut(s) 52, 217
TaqI TCGA 1 cut(s) 551
TasI AATT 6 cut(s) 90, 188, 668, 701, 712, 842
TatI WGTACW 1 cut(s) 595
TfiI GAWTC 3 cut(s) 173, 676, 815
Tru1I TTAA 2 cut(s) 221, 704
Tru9I TTAA 2 cut(s) 221, 704
TscAI CASTG 4 cut(s) 57, 220, 430, 691
TseFI GTSAC 2 cut(s) 52, 334
TseI GCWGC 2 cut(s) 800, 835
Tsp45I GTSAC 2 cut(s) 52, 334
TspDTI ATGAA 2 cut(s) 171, 450
TspRI CASTG 4 cut(s) 57, 220, 430, 691
Van91I CCANNNNNTGG 1 cut(s) 866
VneI GTGCAC 1 cut(s) 524
VpaK11BI GGWCC 1 cut(s) 767
XapI RAATTY 2 cut(s) 188, 712
XceI RCATGY 2 cut(s) 342, 568
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 544
XspI CTAG 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.