Rorug05G0062000

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016189
Physical Location & Seq
Forward (+)
5393366 .. 5394473
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0062000.1

Sequence Viewer

Length: 747 bp
ATGGAAACCTCTCCCAGAAGAGAGACTAACCCTAACCCTAAACCTAACCCAAACGCCCTCCCATCCCCAAACAGCAGCAGCACAAGCAGCACCAACAGCAACAACAATGGACTCCAAGCTCCACCAACAACCCCAACCGCCCAACCCCTGAAACCCATGACCAGATCCGACTCCGCTAACCCTTACCCGACCACCTTCGTCCAGGCCGACACCTCATCTTTCAAACAAGTCGTCCAAATGCTGACCGGATCCTCCGAAACAGCCAGCAAGGTCGCGTGTTCGAAACACGATGCCAGACACAACATCCCGCCGATCAAGTCCACCCCCAAGAAGCAGCAACAGCAACAGAACTCCGGTTTCAAGCTCTACGAGCGCCGCAACAACGCCCTGAAGAATCTCCGGCTCAACCCTCTTATCCCAATCCCGGTGTTCAATTCCAACAACAACAACAACTCCGGGTTCTCGCCGCGAAACCCGGAGATTTTGTCGCCGAGCATTCTCGATTTCCCGGCGCTGGTGCTCAGCCCCGTCACGCCGCTCATACCCGACCCGTTTGACCGGGCCGGGTCGGCGAATTTCGGGCATGGCTGCTCACAGTTGAACAAGGAGGCCGAAGAGAAAGCGATCAAAGAAAAAGGGTTTTACTTGCACCCGTCGCCGACTACGACGCCGAGGGAATCGGAGCCCCGATTGTTGCCCTTGTTCCCGACGACGTCGCCTAGAGCTTCAGGTTCATCTCCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreD

Protein Analysis

248

Amino Acids

26.89

Weight (kDa)

9.76

Isoelectric Point (pI)

60.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 61 - 87 1.9e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35035 AT2G35035
fragaria_vesca FvH4_3g12650
malus_domestica MD10G1229500.v1.1
prunus_persica Prupe.4G115300_v2.0.a1
pyrus_communis pycom10g19300
rosa_chinensis RchiOBHm_Chr5g0020621
rosa_laevigata RLG00000032544
rosa_multiflora Rmu_sc0005607.1_g000014
rosa_roxburghii Rroxscaffold_1G00057670
rosa_rugosa Rorug05G0061900 Rorug05G0062000
rosa_samantha Rh5AG151700 Rh5BG151300
rosa_wichuraiana Rw5G013440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 716
AccBSI CCGCTC 1 cut(s) 538
AccII CGCG 2 cut(s) 275, 469
AciI CCGC 6 cut(s) 138, 174, 308, 376, 467, 536
AclWI GGATC 3 cut(s) 159, 243, 256
AcsI RAATTY 1 cut(s) 574
AcuI CTGAAG 2 cut(s) 410, 711
AcyI GRCGYC 2 cut(s) 668, 713
AfiI CCNNNNNNNGG 2 cut(s) 424, 514
AgsI TTSAA 4 cut(s) 223, 361, 433, 601
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 3 cut(s) 119, 364, 725
AluI AGCT 3 cut(s) 119, 364, 725
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 3 cut(s) 159, 243, 256
AoxI GGCC 3 cut(s) 204, 561, 609
ApeKI GCWGC 5 cut(s) 75, 78, 87, 334, 588
ApoI RAATTY 1 cut(s) 574
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
AspLEI GCGC 2 cut(s) 375, 514
AspS9I GGNCC 1 cut(s) 561
AsuC2I CCSGG 6 cut(s) 425, 457, 476, 509, 560, 565
AsuII TTCGAA 1 cut(s) 281
BamHI GGATCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 687
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 5 cut(s) 87, 90, 99, 346, 575
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 203
BcnI CCSGG 6 cut(s) 425, 457, 476, 509, 560, 565
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 1 cut(s) 720
BfoI RGCGCY 2 cut(s) 376, 515
BglI GCCNNNNNGGC 1 cut(s) 569
BisI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 467, 536, 589
BlpI GCTNAGC 1 cut(s) 521
BlsI GCNGC 8 cut(s) 77, 80, 89, 336, 377, 468, 537, 590
Bme1390I CCNGG 7 cut(s) 203, 425, 457, 476, 509, 560, 565
BmgT120I GGNCC 1 cut(s) 561
BmiI GGNNCC 2 cut(s) 250, 684
BmrFI CCNGG 7 cut(s) 203, 425, 457, 476, 509, 560, 565
BmsI GCATC 1 cut(s) 280
Bpu1102I GCTNAGC 1 cut(s) 521
Bpu14I TTCGAA 1 cut(s) 281
BpuMI CCSGG 6 cut(s) 425, 457, 476, 509, 560, 565
BsaHI GRCGYC 2 cut(s) 668, 713
BsaJI CCNNGG 1 cut(s) 671
BsaWI WCCGGW 2 cut(s) 245, 353
BsaXI ACNNNNNCTCC 4 cut(s) 437, 467, 470, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 514
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 671
BseGI GGATG 2 cut(s) 62, 303
BseLI CCNNNNNNNGG 2 cut(s) 424, 514
BseMII CTCAG 1 cut(s) 535
BseXI GCAGC 5 cut(s) 87, 90, 99, 346, 575
Bsh1236I CGCG 2 cut(s) 275, 469
BshFI GGCC 3 cut(s) 206, 563, 611
BsiHKAI GWGCWC 1 cut(s) 522
BsiSI CCGG 9 cut(s) 246, 354, 400, 425, 456, 476, 509, 559, 564
BslI CCNNNNNNNGG 2 cut(s) 424, 514
BsmAI GTCTC 1 cut(s) 17
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 3 cut(s) 206, 563, 611
Bsp119I TTCGAA 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 522, 687
Bsp143I GATC 4 cut(s) 164, 248, 312, 624
Bsp1720I GCTNAGC 1 cut(s) 521
BspACI CCGC 6 cut(s) 138, 174, 308, 376, 467, 536
BspANI GGCC 3 cut(s) 206, 563, 611
BspCNI CTCAG 1 cut(s) 534
BspFNI CGCG 2 cut(s) 275, 469
BspLI GGNNCC 2 cut(s) 250, 684
BspPI GGATC 3 cut(s) 159, 243, 256
BspT104I TTCGAA 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 538
BssECI CCNNGG 1 cut(s) 671
BssMI GATC 4 cut(s) 164, 248, 312, 624
BssNI GRCGYC 2 cut(s) 668, 713
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 597
Bst6I CTCTTC 2 cut(s) 13, 609
BstACI GRCGYC 2 cut(s) 668, 713
BstBI TTCGAA 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 521
BstF5I GGATG 2 cut(s) 62, 303
BstFNI CGCG 2 cut(s) 275, 469
BstH2I RGCGCY 2 cut(s) 376, 515
BstHHI GCGC 2 cut(s) 375, 514
BstKTI GATC 4 cut(s) 167, 251, 315, 627
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 4 cut(s) 164, 248, 312, 624
BstMWI GCNNNNNNNGC 7 cut(s) 84, 87, 96, 340, 370, 569, 655
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 7 cut(s) 201, 423, 455, 474, 507, 558, 563
BstUI CGCG 2 cut(s) 275, 469
BstV1I GCAGC 5 cut(s) 87, 90, 99, 346, 575
BstX2I RGATCY 2 cut(s) 164, 248
BstYI RGATCY 2 cut(s) 164, 248
BsuRI GGCC 3 cut(s) 206, 563, 611
BtsCI GGATG 2 cut(s) 62, 303
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 2 cut(s) 375, 514
Cfr13I GGNCC 1 cut(s) 561
CseI GACGC 1 cut(s) 676
CviAII CATG 2 cut(s) 157, 584
DdeI CTNAG 1 cut(s) 521
DpnI GATC 4 cut(s) 166, 250, 314, 626
DpnII GATC 4 cut(s) 164, 248, 312, 624
Eam1104I CTCTTC 2 cut(s) 13, 609
EarI CTCTTC 2 cut(s) 13, 609
Eco24I GRGCYC 1 cut(s) 687
Eco57I CTGAAG 2 cut(s) 410, 711
EcoRII CCWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 687
FaeI CATG 2 cut(s) 160, 587
FaiI YATR 3 cut(s) 158, 542, 585
FatI CATG 2 cut(s) 156, 583
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 467, 536, 589
FokI GGATG 2 cut(s) 49, 290
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 467, 536, 589
FspBI CTAG 1 cut(s) 720
GlaI GCGC 2 cut(s) 374, 513
GluI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 467, 536, 589
HaeII RGCGCY 2 cut(s) 376, 515
HaeIII GGCC 3 cut(s) 206, 563, 611
HapII CCGG 9 cut(s) 246, 354, 400, 425, 456, 476, 509, 559, 564
HgaI GACGC 1 cut(s) 676
HhaI GCGC 2 cut(s) 375, 514
Hin1I GRCGYC 2 cut(s) 668, 713
Hin1II CATG 2 cut(s) 160, 587
Hin6I GCGC 2 cut(s) 373, 512
HinP1I GCGC 2 cut(s) 373, 512
HinfI GANTC 4 cut(s) 111, 170, 394, 677
HpaII CCGG 9 cut(s) 246, 354, 400, 425, 456, 476, 509, 559, 564
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 3 cut(s) 169, 256, 682
Hpy188III TCNNGA 3 cut(s) 500, 706, 744
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 5 cut(s) 658, 670, 712, 715, 718
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 597
HpyCH4IV ACGT 1 cut(s) 713
HpyCH4V TGCA 1 cut(s) 649
HpyF10VI GCNNNNNNNGC 7 cut(s) 84, 87, 96, 340, 370, 569, 655
HpyF3I CTNAG 1 cut(s) 521
HpySE526I ACGT 1 cut(s) 713
Hsp92I GRCGYC 2 cut(s) 668, 713
Hsp92II CATG 2 cut(s) 160, 587
HspAI GCGC 2 cut(s) 373, 512
Kzo9I GATC 4 cut(s) 164, 248, 312, 624
LmnI GCTCC 2 cut(s) 124, 682
Lsp1109I GCAGC 5 cut(s) 87, 90, 99, 346, 575
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 720
MaeII ACGT 1 cut(s) 713
MaeIII GTNAC 1 cut(s) 529
MalI GATC 4 cut(s) 166, 250, 314, 626
MbiI CCGCTC 1 cut(s) 538
MboI GATC 4 cut(s) 164, 248, 312, 624
MboII GAAGA 3 cut(s) 30, 403, 626
MflI RGATCY 2 cut(s) 164, 248
MhlI GDGCHC 2 cut(s) 522, 687
MluCI AATT 2 cut(s) 433, 574
MlyI GAGTC 2 cut(s) 105, 164
MmeI TCCRAC 2 cut(s) 192, 462
MnlI CCTC 7 cut(s) 19, 68, 223, 262, 420, 601, 666
MspI CCGG 9 cut(s) 246, 354, 400, 425, 456, 476, 509, 559, 564
MspR9I CCNGG 7 cut(s) 203, 425, 457, 476, 509, 560, 565
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 2 cut(s) 275, 469
MwoI GCNNNNNNNGC 7 cut(s) 84, 87, 96, 340, 370, 569, 655
NciI CCSGG 6 cut(s) 425, 457, 476, 509, 560, 565
NdeII GATC 4 cut(s) 164, 248, 312, 624
NlaIII CATG 2 cut(s) 160, 587
NlaIV GGNNCC 2 cut(s) 250, 684
NmeAIII GCCGAG 2 cut(s) 516, 696
NmuCI GTSAC 1 cut(s) 529
NspV TTCGAA 1 cut(s) 281
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 662
PctI GAATGC 1 cut(s) 495
PfeI GAWTC 2 cut(s) 394, 677
PflFI GACNNNGTC 1 cut(s) 712
PkrI GCNGC 8 cut(s) 77, 80, 89, 336, 377, 468, 537, 590
PleI GAGTC 2 cut(s) 105, 164
PpsI GAGTC 2 cut(s) 105, 164
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 250, 684
PspPI GGNCC 1 cut(s) 561
PsuI RGATCY 2 cut(s) 164, 248
PsyI GACNNNGTC 1 cut(s) 712
SatI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 467, 536, 589
Sau3AI GATC 4 cut(s) 164, 248, 312, 624
Sau96I GGNCC 1 cut(s) 561
SchI GAGTC 2 cut(s) 105, 164
ScrFI CCNGG 7 cut(s) 203, 425, 457, 476, 509, 560, 565
SduI GDGCHC 2 cut(s) 522, 687
SfaNI GCATC 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 281
Sse9I AATT 2 cut(s) 433, 574
SsiI CCGC 6 cut(s) 138, 174, 308, 376, 467, 536
SspMI CTAG 1 cut(s) 720
StyD4I CCNGG 7 cut(s) 201, 423, 455, 474, 507, 558, 563
TaaI ACNGT 1 cut(s) 597
TaiI ACGT 1 cut(s) 716
TaqI TCGA 2 cut(s) 281, 501
TasI AATT 2 cut(s) 433, 574
TauI GCSGC 3 cut(s) 378, 469, 538
TfiI GAWTC 2 cut(s) 394, 677
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 5 cut(s) 75, 78, 87, 334, 588
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 1 cut(s) 723
Tth111I GACNNNGTC 1 cut(s) 712
XapI RAATTY 1 cut(s) 574
XspI CTAG 1 cut(s) 720
ZraI GACGTC 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.