RchiOBHm_Chr5g0020621

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016189
Physical Location & Seq
Forward (+)
14872810 .. 14875456
2647 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30069

Sequence Viewer

Length: 924 bp
ATGATACTCGTTTTGGGTAGTGAGGGCTGGAGAGTAGGGATGGAAAAACAGGGAAGGTTGGTGGTTGAAAAAGTGGGAGGAAGGTCAACTGTGACAAGGAGCTTCTCAAAGTACCCTCTCAAATTCATAGTACCCAGAAAGGTGGGTTCCTCTAAAGCTGATGCTGTTTGGGTTTACACCCTCACCTATGGTGGTGGCATTGTCACTGGAGATTCTATTTCTTGTGAATTTACCATTGGAGATGGTTGCACCACTGTCATAACAACCCAAGCTTCCACCAAGGTATACAAGTCTCTGGGGGCCAAGTGCTCTGAACAAGTCATGGAGGCAAGAGTTGGGAGCAATGCTCTTTTGGCTGTCATTCCAGATCCTGTGACATGTTTTTCCACAGCGAGATACTCCCAGAAACAAATCTTTAGGGTAGTCTCTGACTCAAGTTTGGTCCTTGTTGATTGGATTACCAGTGGGCGTCATGAAAGTGGAGAAAAATGGGATTTTGATCTTTATAAGAGTGCAAACCACATCTTTATAGGAGATGAGCCCTTGTTTCTTGACATGGTGCACCTGGAGAGTGGAAGTGCTTCTTCAATTGCAGAACGCATGCAGGACTATCAAGTCATTGCAATGGTTGTACTGTTGGGGCCAAAGATAAAGTACATTCAAGACCTAGTTCAAGAAAATGTGAAAAGGATGATGTCTGAGCAATTGCACATTCCTTCCACTGCCTCAGGTCGCCAAAAGAATTCAAATTCTGATTATCGCTTCACCAAACCAAGCTTTATTGCTTCTTCCAGTGTTTTTGGTTCTAAGGGAATAGGGGTGGTTGTTCGTATAGCTGCCACAACAACTGAATCAGTTTACGAGTTCCTGCAGCATCAATTGGCCGGGATGGAGCCACTACTTGGTGTATCACCATATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreD

Protein Analysis

307

Amino Acids

33.66

Weight (kDa)

8.55

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreD PF01774 59 - 284 8.9e-56 UreD urease accessory protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35035 AT2G35035
fragaria_vesca FvH4_3g12650
malus_domestica MD10G1229500.v1.1
prunus_persica Prupe.4G115300_v2.0.a1
pyrus_communis pycom10g19300
rosa_chinensis RchiOBHm_Chr5g0020621
rosa_laevigata RLG00000032544
rosa_multiflora Rmu_sc0005607.1_g000014
rosa_roxburghii Rroxscaffold_1G00057670
rosa_rugosa Rorug05G0061900 Rorug05G0062000
rosa_samantha Rh5AG151700 Rh5BG151300
rosa_wichuraiana Rw5G013440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 507
AasI GACNNNNNNGTC 1 cut(s) 614
AccB7I CCANNNNNTGG 1 cut(s) 902
AccI GTMKAC 1 cut(s) 285
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 1 cut(s) 882
AcsI RAATTY 4 cut(s) 122, 227, 742, 748
AcyI GRCGYC 1 cut(s) 469
AfaI GTAC 4 cut(s) 113, 132, 633, 656
AfiI CCNNNNNNNGG 1 cut(s) 902
AflIII ACRYGT 1 cut(s) 377
AgsI TTSAA 5 cut(s) 68, 588, 662, 674, 747
AjnI CCWGG 1 cut(s) 564
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
AluBI AGCT 5 cut(s) 102, 158, 272, 777, 836
AluI AGCT 5 cut(s) 102, 158, 272, 777, 836
Alw21I GWGCWC 2 cut(s) 311, 564
Alw26I GTCTC 2 cut(s) 297, 430
Alw44I GTGCAC 1 cut(s) 560
AlwI GGATC 1 cut(s) 362
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 3 cut(s) 300, 641, 882
ApaLI GTGCAC 1 cut(s) 560
ApeKI GCWGC 2 cut(s) 836, 871
ApoI RAATTY 4 cut(s) 122, 227, 742, 748
Asp700I GAANNNNTTC 1 cut(s) 580
AspS9I GGNCC 3 cut(s) 300, 442, 641
AsuC2I CCSGG 1 cut(s) 886
AsuHPI GGTGA 3 cut(s) 175, 757, 903
AvaII GGWCC 1 cut(s) 442
AxyI CCTNAGG 1 cut(s) 727
BaeGI GKGCMC 1 cut(s) 564
BanII GRGCYC 1 cut(s) 543
Bbv12I GWGCWC 2 cut(s) 311, 564
BbvI GCAGC 2 cut(s) 823, 883
BccI CCATC 3 cut(s) 34, 236, 883
BciT130I CCWGG 1 cut(s) 566
BcnI CCSGG 1 cut(s) 886
BcoDI GTCTC 2 cut(s) 297, 430
BfaI CTAG 1 cut(s) 668
BfmI CTRYAG 1 cut(s) 869
BisI GCNGC 2 cut(s) 837, 872
BlsI GCNGC 2 cut(s) 838, 873
Bme1390I CCNGG 2 cut(s) 566, 886
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 3 cut(s) 300, 442, 641
BmiI GGNNCC 4 cut(s) 148, 301, 642, 894
BmrFI CCNGG 2 cut(s) 566, 886
BmsI GCATC 2 cut(s) 151, 883
BplI GAGNNNNNCTC 2 cut(s) 331, 363
BpmI CTGGAG 3 cut(s) 49, 228, 587
BpuEI CTTGAG 1 cut(s) 418
BpuMI CCSGG 1 cut(s) 886
BsaBI GATNNNNATC 1 cut(s) 498
BsaHI GRCGYC 1 cut(s) 469
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 902
Bse1I ACTGG 3 cut(s) 211, 462, 792
Bse21I CCTNAGG 1 cut(s) 727
Bse3DI GCAATG 3 cut(s) 349, 618, 630
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 3 cut(s) 45, 696, 894
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 902
BseMI GCAATG 3 cut(s) 349, 618, 630
BseMII CTCAG 2 cut(s) 690, 741
BseNI ACTGG 3 cut(s) 211, 462, 792
BseSI GKGCMC 1 cut(s) 564
BseXI GCAGC 2 cut(s) 823, 883
BshFI GGCC 3 cut(s) 302, 643, 884
BsiHKAI GWGCWC 2 cut(s) 311, 564
BsiSI CCGG 1 cut(s) 885
BslI CCNNNNNNNGG 1 cut(s) 902
BsmAI GTCTC 2 cut(s) 297, 430
BsnI GGCC 3 cut(s) 302, 643, 884
Bsp1286I GDGCHC 3 cut(s) 311, 543, 564
Bsp143I GATC 2 cut(s) 367, 499
BspANI GGCC 3 cut(s) 302, 643, 884
BspCNI CTCAG 2 cut(s) 691, 740
BspHI TCATGA 1 cut(s) 472
BspLI GGNNCC 4 cut(s) 148, 301, 642, 894
BspMAI CTGCAG 1 cut(s) 873
BspPI GGATC 1 cut(s) 362
BsrDI GCAATG 3 cut(s) 349, 618, 630
BsrI ACTGG 3 cut(s) 211, 462, 792
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 2 cut(s) 367, 499
BssNAI GTATAC 1 cut(s) 286
BssNI GRCGYC 1 cut(s) 469
BssT1I CCWWGG 1 cut(s) 279
Bst1107I GTATAC 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 3 cut(s) 91, 256, 636
BstACI GRCGYC 1 cut(s) 469
BstC8I GCNNGC 1 cut(s) 602
BstDEI CTNAG 3 cut(s) 699, 727, 807
BstF5I GGATG 3 cut(s) 45, 696, 894
BstKTI GATC 2 cut(s) 370, 502
BstMAI GTCTC 2 cut(s) 297, 430
BstMBI GATC 2 cut(s) 367, 499
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNI CCWGG 1 cut(s) 566
BstNSI RCATGY 2 cut(s) 381, 604
BstSCI CCNGG 2 cut(s) 564, 884
BstSFI CTRYAG 1 cut(s) 869
BstSLI GKGCMC 1 cut(s) 564
BstV1I GCAGC 2 cut(s) 823, 883
BstX2I RGATCY 1 cut(s) 367
BstXI CCANNNNNNTGG 1 cut(s) 142
BstYI RGATCY 1 cut(s) 367
BstZ17I GTATAC 1 cut(s) 286
Bsu36I CCTNAGG 1 cut(s) 727
BsuRI GGCC 3 cut(s) 302, 643, 884
BtsCI GGATG 3 cut(s) 45, 696, 894
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 5 cut(s) 204, 252, 469, 720, 799
Cac8I GCNNGC 1 cut(s) 602
CaiI CAGNNNCTG 1 cut(s) 371
CciI TCATGA 1 cut(s) 472
Cfr13I GGNCC 3 cut(s) 300, 442, 641
CseI GACGC 1 cut(s) 458
Csp6I GTAC 4 cut(s) 112, 131, 632, 655
CviAII CATG 5 cut(s) 322, 378, 473, 556, 601
CviQI GTAC 4 cut(s) 112, 131, 632, 655
DdeI CTNAG 3 cut(s) 699, 727, 807
DpnI GATC 2 cut(s) 369, 501
DpnII GATC 2 cut(s) 367, 499
DrdI GACNNNNNNGTC 1 cut(s) 614
DseDI GACNNNNNNGTC 1 cut(s) 614
EaeI YGGCCR 1 cut(s) 882
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 543
Eco47I GGWCC 1 cut(s) 442
Eco81I CCTNAGG 1 cut(s) 727
EcoRI GAATTC 1 cut(s) 742
EcoRII CCWGG 1 cut(s) 564
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 5 cut(s) 325, 381, 476, 559, 604
FalI AAGNNNNNCTT 2 cut(s) 568, 600
FatI CATG 5 cut(s) 321, 377, 472, 555, 600
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 837, 872
FokI GGATG 3 cut(s) 52, 703, 901
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 2 cut(s) 837, 872
FspBI CTAG 1 cut(s) 668
GluI GCNGC 2 cut(s) 837, 872
GsuI CTGGAG 3 cut(s) 49, 228, 587
HaeIII GGCC 3 cut(s) 302, 643, 884
HapII CCGG 1 cut(s) 885
HgaI GACGC 1 cut(s) 458
Hin1I GRCGYC 1 cut(s) 469
Hin1II CATG 5 cut(s) 325, 381, 476, 559, 604
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HindIII AAGCTT 2 cut(s) 270, 775
HinfI GANTC 3 cut(s) 212, 431, 851
HpaII CCGG 1 cut(s) 885
HphI GGTGA 3 cut(s) 175, 757, 903
Hpy166II GTNNAC 5 cut(s) 87, 175, 286, 562, 859
Hpy188I TCNGA 4 cut(s) 313, 430, 700, 754
Hpy188III TCNNGA 5 cut(s) 365, 473, 551, 662, 674
Hpy8I GTNNAC 5 cut(s) 87, 175, 286, 562, 859
HpyAV CCTTC 3 cut(s) 48, 75, 726
HpyCH4III ACNGT 3 cut(s) 91, 256, 636
HpyCH4V TGCA 8 cut(s) 249, 515, 562, 593, 604, 623, 709, 871
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 3 cut(s) 699, 727, 807
Hsp92I GRCGYC 1 cut(s) 469
Hsp92II CATG 5 cut(s) 325, 381, 476, 559, 604
Kzo9I GATC 2 cut(s) 367, 499
LmnI GCTCC 3 cut(s) 99, 339, 892
Lsp1109I GCAGC 2 cut(s) 823, 883
LweI GCATC 2 cut(s) 151, 883
MaeI CTAG 1 cut(s) 668
MaeIII GTNAC 3 cut(s) 91, 202, 373
MalI GATC 2 cut(s) 369, 501
MboI GATC 2 cut(s) 367, 499
MboII GAAGA 2 cut(s) 576, 780
MfeI CAATTG 3 cut(s) 588, 704, 878
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 3 cut(s) 311, 543, 564
MluCI AATT 7 cut(s) 122, 227, 588, 704, 742, 748, 878
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 7 cut(s) 16, 71, 126, 160, 191, 319, 736
MroXI GAANNNNTTC 1 cut(s) 580
MslI CAYNNNNRTG 2 cut(s) 477, 623
MspI CCGG 1 cut(s) 885
MspR9I CCNGG 2 cut(s) 566, 886
MunI CAATTG 3 cut(s) 588, 704, 878
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 1 cut(s) 353
NciI CCSGG 1 cut(s) 886
NdeII GATC 2 cut(s) 367, 499
NlaIII CATG 5 cut(s) 325, 381, 476, 559, 604
NlaIV GGNNCC 4 cut(s) 148, 301, 642, 894
NmuCI GTSAC 3 cut(s) 91, 202, 373
NspI RCATGY 2 cut(s) 381, 604
PaeI GCATGC 1 cut(s) 604
PagI TCATGA 1 cut(s) 472
PciI ACATGT 1 cut(s) 377
PdmI GAANNNNTTC 1 cut(s) 580
PfeI GAWTC 2 cut(s) 212, 851
PflMI CCANNNNNTGG 1 cut(s) 902
PkrI GCNGC 2 cut(s) 838, 873
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PscI ACATGT 1 cut(s) 377
PsiI TTATAA 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 4 cut(s) 148, 301, 642, 894
PspPI GGNCC 3 cut(s) 300, 442, 641
PstI CTGCAG 1 cut(s) 873
PstNI CAGNNNCTG 1 cut(s) 371
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 4 cut(s) 113, 132, 633, 656
RsaNI GTAC 4 cut(s) 112, 131, 632, 655
RseI CAYNNNNRTG 2 cut(s) 477, 623
SatI GCNGC 2 cut(s) 837, 872
Sau3AI GATC 2 cut(s) 367, 499
Sau96I GGNCC 3 cut(s) 300, 442, 641
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 2 cut(s) 566, 886
SduI GDGCHC 3 cut(s) 311, 543, 564
SfaNI GCATC 2 cut(s) 151, 883
SfcI CTRYAG 1 cut(s) 869
SinI GGWCC 1 cut(s) 442
SmiMI CAYNNNNRTG 2 cut(s) 477, 623
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
SphI GCATGC 1 cut(s) 604
Sse9I AATT 7 cut(s) 122, 227, 588, 704, 742, 748, 878
SspMI CTAG 1 cut(s) 668
StyD4I CCNGG 2 cut(s) 564, 884
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 3 cut(s) 91, 256, 636
TasI AATT 7 cut(s) 122, 227, 588, 704, 742, 748, 878
TatI WGTACW 2 cut(s) 631, 654
TfiI GAWTC 2 cut(s) 212, 851
TscAI CASTG 5 cut(s) 211, 259, 469, 727, 799
TseFI GTSAC 3 cut(s) 91, 202, 373
TseI GCWGC 2 cut(s) 836, 871
Tsp45I GTSAC 3 cut(s) 91, 202, 373
TspDTI ATGAA 2 cut(s) 115, 489
TspRI CASTG 5 cut(s) 211, 259, 469, 727, 799
Van91I CCANNNNNTGG 1 cut(s) 902
VneI GTGCAC 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 442
XapI RAATTY 4 cut(s) 122, 227, 742, 748
XceI RCATGY 2 cut(s) 381, 604
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 580
XspI CTAG 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.