FvH4_3g12650

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016189
Physical Location & Seq
Forward (+)
7542359 .. 7545189
2831 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12650.t1

Sequence Viewer

Length: 885 bp
ATGGAAAAACAGGGAAGGTTGGTGGTTGAAAAAGTGGGAGGAAGGTCAACTGTGACAAGGAGCTTCTCAAAGTACCCTCTCAAATTCATTATACCCAGAAAGGTGGGTTCTTCTAAAGCTGATGCTGTTTGGGTTTACACCCTCACCTATGGTGGTGGCATTGTCACTGGGGATTCTATTTCTTGTGAATTCACCATTGGAGATGGTTGCACCACTGTCATAACAACCCAAGCTTCCACCAAGGTATACAAGTCTCTGGGAGCCAAGTGCTCTGAACAAGTCATGGAGGCAAGAGTTGGGAGCAATGCTCTTTTGGCTGTAATTCCAGATCCTGTGACATGTTTTTCCACAGCAAGATACTCCCAGAAACAAATCTTTAGGGTTGCCTCTGACTCAAGTTTGGTCCTTGTTGATTGGATTACCAGTGGGCGTCATGAAAGTGGAGAAAAATGGGATTTTGATCTTTATAAGAGTGCAAACCACATCTTTATAGGAGATGAGCCTTTGTTTCTCGACATGGTGCACCTGGAGAATGGAAGTATTTCTTCAATTGCAGAACGCATGCAGGATTATCAAGTCAATGCTATGGTTGTCCTGTTGGGGCCAAAGATCAAGCACATTAAAGACTTAGTTCAAGAGAATGTGAAAAGGATGATGGCTGAGCAATTACACAATCATTCCACTGCTTCAGGTCGCCAACAGAAAATAAATTCTGATTATCGCCTCACCAAACCAAGCTTTATTGCTTCTTCAAGTATTTTTGGCCCTAAGGGAATAGGGGTTGTTGTTCGTATAGCTGCCACAACAACCGAATCAGTTTACAAGTTCCTGCAGCATCAATTGGCCGGCATGGAGCCACTGCTTGGTGTATCACCATATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreD

Protein Analysis

295

Amino Acids

32.35

Weight (kDa)

9.03

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreD PF01774 46 - 271 5.1e-56 UreD urease accessory protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35035 AT2G35035
fragaria_vesca FvH4_3g12650
malus_domestica MD10G1229500.v1.1
prunus_persica Prupe.4G115300_v2.0.a1
pyrus_communis pycom10g19300
rosa_chinensis RchiOBHm_Chr5g0020621
rosa_laevigata RLG00000032544
rosa_multiflora Rmu_sc0005607.1_g000014
rosa_roxburghii Rroxscaffold_1G00057670
rosa_rugosa Rorug05G0061900 Rorug05G0062000
rosa_samantha Rh5AG151700 Rh5BG151300
rosa_wichuraiana Rw5G013440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AccB7I CCANNNNNTGG 1 cut(s) 863
AccI GTMKAC 1 cut(s) 246
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 843
AcsI RAATTY 3 cut(s) 83, 188, 709
AcuI CTGAAG 1 cut(s) 672
AcyI GRCGYC 1 cut(s) 430
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 863
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 4 cut(s) 29, 549, 635, 753
AjnI CCWGG 1 cut(s) 525
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 5 cut(s) 63, 119, 233, 738, 797
AluI AGCT 5 cut(s) 63, 119, 233, 738, 797
Alw21I GWGCWC 2 cut(s) 272, 525
Alw26I GTCTC 1 cut(s) 258
Alw44I GTGCAC 1 cut(s) 521
AlwI GGATC 1 cut(s) 323
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 3 cut(s) 602, 763, 843
ApaLI GTGCAC 1 cut(s) 521
ApeKI GCWGC 2 cut(s) 797, 832
ApoI RAATTY 3 cut(s) 83, 188, 709
Asp700I GAANNNNTTC 1 cut(s) 541
AspS9I GGNCC 3 cut(s) 403, 602, 764
AsuHPI GGTGA 4 cut(s) 136, 184, 718, 864
AvaII GGWCC 1 cut(s) 403
AxyI CCTNAGG 1 cut(s) 768
BaeGI GKGCMC 1 cut(s) 525
Bbv12I GWGCWC 2 cut(s) 272, 525
BbvI GCAGC 2 cut(s) 784, 844
BccI CCATC 2 cut(s) 197, 649
BciT130I CCWGG 1 cut(s) 527
BcoDI GTCTC 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 830
BisI GCNGC 2 cut(s) 798, 833
BlpI GCTNAGC 1 cut(s) 660
BlsI GCNGC 2 cut(s) 799, 834
Bme1390I CCNGG 1 cut(s) 527
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 3 cut(s) 403, 602, 764
BmiI GGNNCC 3 cut(s) 262, 603, 855
BmrFI CCNGG 1 cut(s) 527
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 2 cut(s) 112, 844
BmuI ACTGGG 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 292, 324
BpmI CTGGAG 1 cut(s) 548
Bpu1102I GCTNAGC 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 379
BsaBI GATNNNNATC 1 cut(s) 459
BsaHI GRCGYC 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 863
Bse118I RCCGGY 1 cut(s) 845
Bse1I ACTGG 2 cut(s) 172, 423
Bse21I CCTNAGG 1 cut(s) 768
Bse3DI GCAATG 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 657
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 863
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 651
BseNI ACTGG 2 cut(s) 172, 423
BseSI GKGCMC 1 cut(s) 525
BseXI GCAGC 2 cut(s) 784, 844
BshFI GGCC 3 cut(s) 604, 765, 845
BsiHKAI GWGCWC 2 cut(s) 272, 525
BsiSI CCGG 1 cut(s) 846
BslI CCNNNNNNNGG 1 cut(s) 863
BsmAI GTCTC 1 cut(s) 258
BsnI GGCC 3 cut(s) 604, 765, 845
Bsp1286I GDGCHC 2 cut(s) 272, 525
Bsp143I GATC 3 cut(s) 328, 460, 609
Bsp1720I GCTNAGC 1 cut(s) 660
BspANI GGCC 3 cut(s) 604, 765, 845
BspCNI CTCAG 1 cut(s) 652
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 262, 603, 855
BspMAI CTGCAG 1 cut(s) 834
BspPI GGATC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 845
BsrI ACTGG 2 cut(s) 172, 423
BssAI RCCGGY 1 cut(s) 845
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 3 cut(s) 328, 460, 609
BssNAI GTATAC 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 430
BssT1I CCWWGG 1 cut(s) 240
Bst1107I GTATAC 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 2 cut(s) 52, 217
BstACI GRCGYC 1 cut(s) 430
BstC8I GCNNGC 2 cut(s) 563, 847
BstDEI CTNAG 3 cut(s) 628, 660, 768
BstF5I GGATG 1 cut(s) 657
BstKTI GATC 3 cut(s) 331, 463, 612
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 3 cut(s) 328, 460, 609
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 527
BstNSI RCATGY 2 cut(s) 342, 565
BstSCI CCNGG 1 cut(s) 525
BstSFI CTRYAG 1 cut(s) 830
BstSLI GKGCMC 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 784, 844
BstX2I RGATCY 1 cut(s) 328
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 328
BstZ17I GTATAC 1 cut(s) 247
Bsu36I CCTNAGG 1 cut(s) 768
BsuRI GGCC 3 cut(s) 604, 765, 845
BtsCI GGATG 1 cut(s) 657
BtsI GCAGTG 2 cut(s) 681, 857
BtsIMutI CAGTG 5 cut(s) 165, 213, 430, 681, 857
Cac8I GCNNGC 2 cut(s) 563, 847
CaiI CAGNNNCTG 1 cut(s) 332
CciI TCATGA 1 cut(s) 433
Cfr10I RCCGGY 1 cut(s) 845
Cfr13I GGNCC 3 cut(s) 403, 602, 764
CseI GACGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 73
CviAII CATG 6 cut(s) 283, 339, 434, 517, 562, 850
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 3 cut(s) 628, 660, 768
DpnI GATC 3 cut(s) 330, 462, 611
DpnII GATC 3 cut(s) 328, 460, 609
EaeI YGGCCR 1 cut(s) 843
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 672
Eco81I CCTNAGG 1 cut(s) 768
EcoRI GAATTC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 6 cut(s) 286, 342, 437, 520, 565, 853
FalI AAGNNNNNCTT 2 cut(s) 529, 561
FatI CATG 6 cut(s) 282, 338, 433, 516, 561, 849
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 798, 833
FokI GGATG 1 cut(s) 664
Fsp4HI GCNGC 2 cut(s) 798, 833
GluI GCNGC 2 cut(s) 798, 833
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 3 cut(s) 604, 765, 845
HapII CCGG 1 cut(s) 846
HgaI GACGC 1 cut(s) 419
Hin1I GRCGYC 1 cut(s) 430
Hin1II CATG 6 cut(s) 286, 342, 437, 520, 565, 853
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HindIII AAGCTT 2 cut(s) 231, 736
HinfI GANTC 3 cut(s) 173, 392, 812
HpaII CCGG 1 cut(s) 846
HphI GGTGA 4 cut(s) 136, 184, 718, 864
Hpy166II GTNNAC 5 cut(s) 48, 136, 247, 523, 820
Hpy188I TCNGA 3 cut(s) 274, 391, 715
Hpy188III TCNNGA 4 cut(s) 326, 434, 512, 635
Hpy8I GTNNAC 5 cut(s) 48, 136, 247, 523, 820
HpyAV CCTTC 2 cut(s) 9, 36
HpyCH4III ACNGT 2 cut(s) 52, 217
HpyCH4V TGCA 6 cut(s) 210, 476, 523, 554, 565, 832
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 3 cut(s) 628, 660, 768
Hsp92I GRCGYC 1 cut(s) 430
Hsp92II CATG 6 cut(s) 286, 342, 437, 520, 565, 853
KroI GCCGGC 1 cut(s) 845
KroNI GCCGGC 1 cut(s) 847
Kzo9I GATC 3 cut(s) 328, 460, 609
LmnI GCTCC 4 cut(s) 60, 260, 300, 853
Lsp1109I GCAGC 2 cut(s) 784, 844
LweI GCATC 2 cut(s) 112, 844
MaeIII GTNAC 3 cut(s) 52, 163, 334
MalI GATC 3 cut(s) 330, 462, 611
MboI GATC 3 cut(s) 328, 460, 609
MboII GAAGA 3 cut(s) 102, 537, 741
MfeI CAATTG 2 cut(s) 549, 839
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 272, 525
MluCI AATT 7 cut(s) 83, 188, 321, 549, 665, 709, 839
MlyI GAGTC 1 cut(s) 386
MnlI CCTC 6 cut(s) 32, 87, 152, 280, 397, 734
MroNI GCCGGC 1 cut(s) 845
MroXI GAANNNNTTC 1 cut(s) 541
MseI TTAA 1 cut(s) 621
MslI CAYNNNNRTG 1 cut(s) 438
MspI CCGG 1 cut(s) 846
MspR9I CCNGG 1 cut(s) 527
MunI CAATTG 2 cut(s) 549, 839
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 1 cut(s) 314
NaeI GCCGGC 1 cut(s) 847
NdeII GATC 3 cut(s) 328, 460, 609
NgoMIV GCCGGC 1 cut(s) 845
NlaIII CATG 6 cut(s) 286, 342, 437, 520, 565, 853
NlaIV GGNNCC 3 cut(s) 262, 603, 855
NmuCI GTSAC 3 cut(s) 52, 163, 334
NspI RCATGY 2 cut(s) 342, 565
PaeI GCATGC 1 cut(s) 565
PagI TCATGA 1 cut(s) 433
PciI ACATGT 1 cut(s) 338
PdiI GCCGGC 1 cut(s) 847
PdmI GAANNNNTTC 1 cut(s) 541
PfeI GAWTC 2 cut(s) 173, 812
PflMI CCANNNNNTGG 1 cut(s) 863
PkrI GCNGC 2 cut(s) 799, 834
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
PscI ACATGT 1 cut(s) 338
PsiI TTATAA 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 525
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 3 cut(s) 262, 603, 855
PspPI GGNCC 3 cut(s) 403, 602, 764
PstI CTGCAG 1 cut(s) 834
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 2 cut(s) 798, 833
Sau3AI GATC 3 cut(s) 328, 460, 609
Sau96I GGNCC 3 cut(s) 403, 602, 764
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 1 cut(s) 527
SduI GDGCHC 2 cut(s) 272, 525
SfaNI GCATC 2 cut(s) 112, 844
SfcI CTRYAG 1 cut(s) 830
SinI GGWCC 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
SphI GCATGC 1 cut(s) 565
Sse9I AATT 7 cut(s) 83, 188, 321, 549, 665, 709, 839
StyD4I CCNGG 1 cut(s) 525
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 52, 217
TaqI TCGA 1 cut(s) 513
TasI AATT 7 cut(s) 83, 188, 321, 549, 665, 709, 839
TfiI GAWTC 2 cut(s) 173, 812
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 5 cut(s) 172, 220, 430, 688, 864
TseFI GTSAC 3 cut(s) 52, 163, 334
TseI GCWGC 2 cut(s) 797, 832
Tsp45I GTSAC 3 cut(s) 52, 163, 334
TspDTI ATGAA 2 cut(s) 76, 450
TspRI CASTG 5 cut(s) 172, 220, 430, 688, 864
Van91I CCANNNNNTGG 1 cut(s) 863
VneI GTGCAC 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 3 cut(s) 83, 188, 709
XceI RCATGY 2 cut(s) 342, 565
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.