RLG00000032544

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016189
Physical Location & Seq
Forward (+)
16299645 .. 16302380
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032544

Sequence Viewer

Length: 981 bp
ATGGAAAAACAGGGAAGGTTGGTGGTTGAAAAAGTGGGAGGAAGGTCAACTGTGACAAGGAGCTTCTCAAAGTACCCTCTCAAATTCATAGTACCCAGAAAGGTGGGTTCCTCTAAAGCTGATGCTGTTTGGGTTTACACCCTCACCTATGGTGGTGGCATTGTCACTGGAGATTCTATATCTTGTGAATTTACCATTGGAGATGATTGCACCACTGTCATAACAACCCAAGCTTCCACCAAGGTATACAAGTCTCTGGGGGCCAAGTGCTCTGAACAAGTCATGGAGGCAAGAGTTGGGAGCAATGCTCTTTTGGCTGTCATTCCGGATCCTGTGACATGTTTTTCCACAGCAAGATACTCCCAGAAACAAATCTTTAGGGTAGTCTCTGACTCAAGTTTGGTCCTTGTTGATTGGATTACCAGTGGGCGTCATGAAAGTGGAGAAAAATGGGATTTTGATATTTATAAGAGTGCAAACCACATCTTTATAGGAGATGAGCCTTTGTTTCTTGACATGGTGCACCTGGAGAGTGGAAGTGCTTCTTCAATTGCAGAACGCATGCAGGACTATCAAGTCATTGCAATGGTTGTACTGTTGGGGCCAAAGATAAAGTACATTCAAGACCTAGTTCAAGAAAATGTGAAAAGGATGATGTCTGAGCAATTGCACATTCCTTCCACTGCCTCAGGTCGCCAAAAGAATTCAAATTCTGATTATCGCTTCACCAAACCAAGCTTTATTGCTTCTTCCAGTGTTTTTGGTCCTAAGGGAATAGGGGTTGTTGTTCGTATAGCTGCCACAACAACTGAATCAGTTTACGAGTTCCTGCAGCATCAATTGGCCGGGATGGAACCACTACTTGGCTGTGATTTTGTTGATCCCACACTACAGCTCTATGGCCTACTTATGTTACACCTTGTTATCAGTGGAAATTTGCTAAGCTTTCTGCCCGGAAGCCTGAAACCTCAATTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreD

Protein Analysis

327

Amino Acids

35.83

Weight (kDa)

7.63

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreD PF01774 46 - 271 3.4e-55 UreD urease accessory protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35035 AT2G35035
fragaria_vesca FvH4_3g12650
malus_domestica MD10G1229500.v1.1
prunus_persica Prupe.4G115300_v2.0.a1
pyrus_communis pycom10g19300
rosa_chinensis RchiOBHm_Chr5g0020621
rosa_laevigata RLG00000032544
rosa_multiflora Rmu_sc0005607.1_g000014
rosa_roxburghii Rroxscaffold_1G00057670
rosa_rugosa Rorug05G0061900 Rorug05G0062000
rosa_samantha Rh5AG151700 Rh5BG151300
rosa_wichuraiana Rw5G013440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AasI GACNNNNNNGTC 1 cut(s) 575
AccB7I CCANNNNNTGG 1 cut(s) 863
AccI GTMKAC 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 325
AclWI GGATC 3 cut(s) 323, 336, 875
AcoI YGGCCR 1 cut(s) 843
AcsI RAATTY 5 cut(s) 83, 188, 703, 709, 934
AcyI GRCGYC 1 cut(s) 430
AfaI GTAC 4 cut(s) 74, 93, 594, 617
AfiI CCNNNNNNNGG 1 cut(s) 863
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 5 cut(s) 29, 549, 623, 635, 708
AjnI CCWGG 1 cut(s) 525
AjuI GAANNNNNNNTTGG 4 cut(s) 180, 212, 846, 878
AluBI AGCT 7 cut(s) 63, 119, 233, 738, 797, 895, 945
AluI AGCT 7 cut(s) 63, 119, 233, 738, 797, 895, 945
Alw21I GWGCWC 2 cut(s) 272, 525
Alw26I GTCTC 2 cut(s) 258, 391
Alw44I GTGCAC 1 cut(s) 521
AlwI GGATC 3 cut(s) 323, 336, 875
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 4 cut(s) 261, 602, 843, 901
ApaLI GTGCAC 1 cut(s) 521
ApeKI GCWGC 2 cut(s) 797, 832
ApoI RAATTY 5 cut(s) 83, 188, 703, 709, 934
Asp700I GAANNNNTTC 1 cut(s) 541
AspS9I GGNCC 4 cut(s) 261, 403, 602, 764
AsuC2I CCSGG 2 cut(s) 847, 954
AsuHPI GGTGA 2 cut(s) 136, 718
AvaII GGWCC 2 cut(s) 403, 764
AxyI CCTNAGG 2 cut(s) 688, 768
BaeGI GKGCMC 1 cut(s) 525
BamHI GGATCC 1 cut(s) 328
Bbv12I GWGCWC 2 cut(s) 272, 525
BbvI GCAGC 2 cut(s) 784, 844
BccI CCATC 1 cut(s) 844
BciT130I CCWGG 1 cut(s) 527
BcnI CCSGG 2 cut(s) 847, 954
BcoDI GTCTC 2 cut(s) 258, 391
BfaI CTAG 1 cut(s) 629
BfmI CTRYAG 2 cut(s) 830, 890
BisI GCNGC 2 cut(s) 798, 833
BlpI GCTNAGC 1 cut(s) 941
BlsI GCNGC 2 cut(s) 799, 834
Bme1390I CCNGG 3 cut(s) 527, 847, 954
Bme18I GGWCC 2 cut(s) 403, 764
BmgT120I GGNCC 4 cut(s) 261, 403, 602, 764
BmiI GGNNCC 5 cut(s) 109, 262, 330, 603, 855
BmrFI CCNGG 3 cut(s) 527, 847, 954
BmsI GCATC 2 cut(s) 112, 844
BplI GAGNNNNNCTC 2 cut(s) 292, 324
BpmI CTGGAG 2 cut(s) 189, 548
Bpu1102I GCTNAGC 1 cut(s) 941
BpuEI CTTGAG 1 cut(s) 379
BpuMI CCSGG 2 cut(s) 847, 954
BsaHI GRCGYC 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 240
BsaWI WCCGGW 1 cut(s) 325
Bsc4I CCNNNNNNNGG 1 cut(s) 863
Bse1I ACTGG 3 cut(s) 172, 423, 753
Bse21I CCTNAGG 2 cut(s) 688, 768
Bse3DI GCAATG 3 cut(s) 310, 579, 591
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 657, 855
BseLI CCNNNNNNNGG 1 cut(s) 863
BseMI GCAATG 3 cut(s) 310, 579, 591
BseMII CTCAG 2 cut(s) 651, 702
BseNI ACTGG 3 cut(s) 172, 423, 753
BseSI GKGCMC 1 cut(s) 525
BseXI GCAGC 2 cut(s) 784, 844
BshFI GGCC 4 cut(s) 263, 604, 845, 903
BsiHKAI GWGCWC 2 cut(s) 272, 525
BsiSI CCGG 3 cut(s) 326, 846, 954
BslI CCNNNNNNNGG 1 cut(s) 863
BsmAI GTCTC 2 cut(s) 258, 391
BsnI GGCC 4 cut(s) 263, 604, 845, 903
Bsp1286I GDGCHC 2 cut(s) 272, 525
Bsp13I TCCGGA 1 cut(s) 325
Bsp143I GATC 2 cut(s) 328, 880
Bsp1720I GCTNAGC 1 cut(s) 941
BspANI GGCC 4 cut(s) 263, 604, 845, 903
BspCNI CTCAG 2 cut(s) 652, 701
BspEI TCCGGA 1 cut(s) 325
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 5 cut(s) 109, 262, 330, 603, 855
BspMAI CTGCAG 1 cut(s) 834
BspPI GGATC 3 cut(s) 323, 336, 875
BsrDI GCAATG 3 cut(s) 310, 579, 591
BsrI ACTGG 3 cut(s) 172, 423, 753
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 2 cut(s) 328, 880
BssNAI GTATAC 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 430
BssT1I CCWWGG 1 cut(s) 240
Bst1107I GTATAC 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 3 cut(s) 52, 217, 597
BstACI GRCGYC 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 563
BstDEI CTNAG 4 cut(s) 660, 688, 768, 941
BstF5I GGATG 2 cut(s) 657, 855
BstKTI GATC 2 cut(s) 331, 883
BstMAI GTCTC 2 cut(s) 258, 391
BstMBI GATC 2 cut(s) 328, 880
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 527
BstNSI RCATGY 2 cut(s) 342, 565
BstSCI CCNGG 3 cut(s) 525, 845, 952
BstSFI CTRYAG 2 cut(s) 830, 890
BstSLI GKGCMC 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 784, 844
BstX2I RGATCY 1 cut(s) 328
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 328
BstZ17I GTATAC 1 cut(s) 247
Bsu36I CCTNAGG 2 cut(s) 688, 768
BsuRI GGCC 4 cut(s) 263, 604, 845, 903
BtsCI GGATG 2 cut(s) 657, 855
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 6 cut(s) 165, 213, 430, 681, 760, 934
Cac8I GCNNGC 1 cut(s) 563
CciI TCATGA 1 cut(s) 433
Cfr13I GGNCC 4 cut(s) 261, 403, 602, 764
CseI GACGC 1 cut(s) 419
Csp6I GTAC 4 cut(s) 73, 92, 593, 616
CviAII CATG 5 cut(s) 283, 339, 434, 517, 562
CviQI GTAC 4 cut(s) 73, 92, 593, 616
DdeI CTNAG 4 cut(s) 660, 688, 768, 941
DpnI GATC 2 cut(s) 330, 882
DpnII GATC 2 cut(s) 328, 880
DrdI GACNNNNNNGTC 1 cut(s) 575
DseDI GACNNNNNNGTC 1 cut(s) 575
EaeI YGGCCR 1 cut(s) 843
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 403, 764
Eco81I CCTNAGG 2 cut(s) 688, 768
EcoRI GAATTC 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 5 cut(s) 286, 342, 437, 520, 565
FalI AAGNNNNNCTT 2 cut(s) 529, 561
FatI CATG 5 cut(s) 282, 338, 433, 516, 561
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 798, 833
FokI GGATG 2 cut(s) 664, 862
Fsp4HI GCNGC 2 cut(s) 798, 833
FspBI CTAG 1 cut(s) 629
GluI GCNGC 2 cut(s) 798, 833
GsuI CTGGAG 2 cut(s) 189, 548
HaeIII GGCC 4 cut(s) 263, 604, 845, 903
HapII CCGG 3 cut(s) 326, 846, 954
HgaI GACGC 1 cut(s) 419
Hin1I GRCGYC 1 cut(s) 430
Hin1II CATG 5 cut(s) 286, 342, 437, 520, 565
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HindIII AAGCTT 3 cut(s) 231, 736, 943
HinfI GANTC 3 cut(s) 173, 392, 812
HpaII CCGG 3 cut(s) 326, 846, 954
HphI GGTGA 2 cut(s) 136, 718
Hpy166II GTNNAC 5 cut(s) 48, 136, 247, 523, 820
Hpy188I TCNGA 4 cut(s) 274, 391, 661, 715
Hpy188III TCNNGA 5 cut(s) 326, 434, 512, 623, 635
Hpy8I GTNNAC 5 cut(s) 48, 136, 247, 523, 820
HpyAV CCTTC 3 cut(s) 9, 36, 687
HpyCH4III ACNGT 3 cut(s) 52, 217, 597
HpyCH4V TGCA 8 cut(s) 210, 476, 523, 554, 565, 584, 670, 832
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 4 cut(s) 660, 688, 768, 941
Hsp92I GRCGYC 1 cut(s) 430
Hsp92II CATG 5 cut(s) 286, 342, 437, 520, 565
Kpn2I TCCGGA 1 cut(s) 325
Kzo9I GATC 2 cut(s) 328, 880
LmnI GCTCC 2 cut(s) 60, 300
Lsp1109I GCAGC 2 cut(s) 784, 844
LweI GCATC 2 cut(s) 112, 844
MaeI CTAG 1 cut(s) 629
MaeIII GTNAC 4 cut(s) 52, 163, 334, 912
MalI GATC 2 cut(s) 330, 882
MboI GATC 2 cut(s) 328, 880
MboII GAAGA 2 cut(s) 537, 741
MfeI CAATTG 3 cut(s) 549, 665, 839
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 272, 525
MluCI AATT 9 cut(s) 83, 188, 549, 665, 703, 709, 839, 934, 971
MlyI GAGTC 1 cut(s) 386
MnlI CCTC 7 cut(s) 32, 87, 121, 152, 280, 697, 978
MroI TCCGGA 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 541
MslI CAYNNNNRTG 2 cut(s) 438, 584
MspI CCGG 3 cut(s) 326, 846, 954
MspR9I CCNGG 3 cut(s) 527, 847, 954
MunI CAATTG 3 cut(s) 549, 665, 839
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 1 cut(s) 314
NciI CCSGG 2 cut(s) 847, 954
NdeII GATC 2 cut(s) 328, 880
NlaIII CATG 5 cut(s) 286, 342, 437, 520, 565
NlaIV GGNNCC 5 cut(s) 109, 262, 330, 603, 855
NmuCI GTSAC 3 cut(s) 52, 163, 334
NspI RCATGY 2 cut(s) 342, 565
PaeI GCATGC 1 cut(s) 565
PagI TCATGA 1 cut(s) 433
PciI ACATGT 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 541
PfeI GAWTC 2 cut(s) 173, 812
PflMI CCANNNNNTGG 1 cut(s) 863
PkrI GCNGC 2 cut(s) 799, 834
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
PscI ACATGT 1 cut(s) 338
PsiI TTATAA 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 525
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 5 cut(s) 109, 262, 330, 603, 855
PspPI GGNCC 4 cut(s) 261, 403, 602, 764
PstI CTGCAG 1 cut(s) 834
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 4 cut(s) 74, 93, 594, 617
RsaNI GTAC 4 cut(s) 73, 92, 593, 616
RseI CAYNNNNRTG 2 cut(s) 438, 584
SatI GCNGC 2 cut(s) 798, 833
Sau3AI GATC 2 cut(s) 328, 880
Sau96I GGNCC 4 cut(s) 261, 403, 602, 764
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 3 cut(s) 527, 847, 954
SduI GDGCHC 2 cut(s) 272, 525
SfaNI GCATC 2 cut(s) 112, 844
SfcI CTRYAG 2 cut(s) 830, 890
SinI GGWCC 2 cut(s) 403, 764
SmiMI CAYNNNNRTG 2 cut(s) 438, 584
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
SphI GCATGC 1 cut(s) 565
Sse9I AATT 9 cut(s) 83, 188, 549, 665, 703, 709, 839, 934, 971
SspMI CTAG 1 cut(s) 629
StyD4I CCNGG 3 cut(s) 525, 845, 952
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 3 cut(s) 52, 217, 597
TasI AATT 9 cut(s) 83, 188, 549, 665, 703, 709, 839, 934, 971
TatI WGTACW 2 cut(s) 592, 615
TfiI GAWTC 2 cut(s) 173, 812
TscAI CASTG 6 cut(s) 172, 220, 430, 688, 760, 934
TseFI GTSAC 3 cut(s) 52, 163, 334
TseI GCWGC 2 cut(s) 797, 832
Tsp45I GTSAC 3 cut(s) 52, 163, 334
TspDTI ATGAA 2 cut(s) 76, 450
TspRI CASTG 6 cut(s) 172, 220, 430, 688, 760, 934
Van91I CCANNNNNTGG 1 cut(s) 863
VneI GTGCAC 1 cut(s) 521
VpaK11BI GGWCC 2 cut(s) 403, 764
XapI RAATTY 5 cut(s) 83, 188, 703, 709, 934
XceI RCATGY 2 cut(s) 342, 565
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 541
XspI CTAG 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.