AT2G35480

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013279
Physical Location & Seq
Forward (+)
14910343 .. 14912048
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35480.1

Sequence Viewer

Length: 588 bp
ATGGTGTTGTGGGAGTTAGCTCTAGGAACAGCTTACTTCTTGGGGATTAGGCGGACTTACCGGCTCGCATTGAAGACCCAGCGTCGGCTTGTTAGCCCTAAGCATCCAAGGATTCGAGATTTTATGCATCGGAGGACTTATCAAATCTTTGATATGGCACTTAGGGTCCACAAGAACATACAACAGAGAGACATGGTTATTGGTCGGAATCTTGGAAACTGGATTCTCCGGGGGCTTGACCGGATGAAGCCATCGGCTCAGGTTCTACTACCAAAGAATACAGAGCCAAGCATAGACAAGGCGAAAAGAGTATTACAATCAACCCGTCTTAAACCACATGTTAACACGCAGACTCCTCAGAACCGTGAGGTTGATAGGAACTTGTTCATGTCCTTGAGGAACTTTCGGTCCAAATACCCCATTGCTTCGATGATGATGATCAAACCTCCAAGATCCACGGGAACTACTACTCAGTACAGGCCTTACAGTGTTGGTGAATCCAGTCTGATTAAACCAATTTATGCTAGAGGCGGGTTCAACAGCGTCATCAGGAAGGACATTTTGCAGTGGATGGTGCAGAAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

23.01

Weight (kDa)

11.55

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32260 AT2G35480 AT2G35480
fragaria_vesca FvH4_5g22890 FvH4_5g22890
malus_domestica MD06G1025400.v1.1
prunus_persica Prupe.5G029700_v2.0.a1
pyrus_communis pycom06g02050
rosa_chinensis RchiOBHm_Chr7g0211591
rosa_laevigata RLG00000002996
rosa_multiflora Rmu_sc0003760.1_g000037
rosa_roxburghii Rroxscaffold_3G00247710
rosa_rugosa Rorug07G0126100
rosa_samantha Rh7AG258500 Rh7BG252800 Rh7CG275600 Rh7DG266100
rosa_wichuraiana Rw7G022110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 52, 531
AclWI GGATC 1 cut(s) 447
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 1 cut(s) 84
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 2 cut(s) 73, 538
AhdI GACNNNNNGTC 1 cut(s) 81
AloI GAACNNNNNNTCC 2 cut(s) 392, 424
AluBI AGCT 2 cut(s) 20, 32
AluI AGCT 2 cut(s) 20, 32
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 1 cut(s) 447
AoxI GGCC 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 383
AspS9I GGNCC 2 cut(s) 166, 408
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 506
AvaII GGWCC 2 cut(s) 166, 408
BbsI GAAGAC 1 cut(s) 80
BccI CCATC 2 cut(s) 259, 565
BclI TGATCA 1 cut(s) 438
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 2 cut(s) 23, 525
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 2 cut(s) 166, 408
BmeRI GACNNNNNGTC 1 cut(s) 81
BmgT120I GGNCC 2 cut(s) 166, 408
BmiI GGNNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 2 cut(s) 112, 136
BpiI GAAGAC 1 cut(s) 80
Bpu10I CCTNAGC 2 cut(s) 99, 258
BpuEI CTTGAG 1 cut(s) 415
BpuMI CCSGG 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 437
BsaJI CCNNGG 3 cut(s) 107, 229, 456
BsaWI WCCGGW 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 2 cut(s) 224, 501
Bse3DI GCAATG 1 cut(s) 420
Bse8I GATNNNNATC 1 cut(s) 437
BseDI CCNNGG 3 cut(s) 107, 229, 456
BseGI GGATG 3 cut(s) 103, 249, 576
BseJI GATNNNNATC 1 cut(s) 437
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 3 cut(s) 272, 371, 485
BseNI ACTGG 2 cut(s) 224, 501
BseRI GAGGAG 1 cut(s) 345
BseYI CCCAGC 1 cut(s) 78
BshFI GGCC 1 cut(s) 481
BsiSI CCGG 3 cut(s) 61, 229, 241
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 183
BsnI GGCC 1 cut(s) 481
Bsp143I GATC 2 cut(s) 438, 452
BspACI CCGC 2 cut(s) 52, 531
BspANI GGCC 1 cut(s) 481
BspCNI CTCAG 3 cut(s) 271, 370, 484
BspLI GGNNCC 1 cut(s) 167
BspPI GGATC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 60
BsrI ACTGG 2 cut(s) 224, 501
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 3 cut(s) 107, 229, 456
BssMI GATC 2 cut(s) 438, 452
BssT1I CCWWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 365, 488
Bst6I CTCTTC 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 5 cut(s) 99, 161, 258, 357, 471
BstDSI CCRYGG 1 cut(s) 456
BstF5I GGATG 3 cut(s) 103, 249, 576
BstKTI GATC 2 cut(s) 441, 455
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 2 cut(s) 438, 452
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
BsuRI GGCC 1 cut(s) 481
BtgI CCRYGG 1 cut(s) 456
BtsCI GGATG 3 cut(s) 103, 249, 576
BtsI GCAGTG 1 cut(s) 572
BtsIMutI CAGTG 2 cut(s) 493, 572
Cac8I GCNNGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 166, 408
CseI GACGC 2 cut(s) 71, 532
Csp6I GTAC 1 cut(s) 475
CviAII CATG 3 cut(s) 193, 338, 388
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 5 cut(s) 99, 161, 258, 357, 471
DpnI GATC 2 cut(s) 440, 454
DpnII GATC 2 cut(s) 438, 452
DriI GACNNNNNGTC 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 575
Eam1105I GACNNNNNGTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 575
EciI GGCGGA 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 107
Eco147I AGGCCT 1 cut(s) 481
Eco47I GGWCC 2 cut(s) 166, 408
EcoT14I CCWWGG 1 cut(s) 107
EcoT22I ATGCAT 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 3 cut(s) 196, 341, 391
FaiI YATR 8 cut(s) 125, 155, 179, 194, 293, 339, 389, 522
FatI CATG 3 cut(s) 192, 337, 387
FauI CCCGC 1 cut(s) 524
FbaI TGATCA 1 cut(s) 438
FokI GGATG 3 cut(s) 90, 256, 583
FspBI CTAG 2 cut(s) 23, 525
GsaI CCCAGC 1 cut(s) 82
HaeIII GGCC 1 cut(s) 481
HapII CCGG 3 cut(s) 61, 229, 241
HgaI GACGC 2 cut(s) 71, 532
Hin1II CATG 3 cut(s) 196, 341, 391
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 5 cut(s) 112, 208, 223, 352, 497
HpaI GTTAAC 1 cut(s) 343
HpaII CCGG 3 cut(s) 61, 229, 241
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 2 cut(s) 169, 343
Hpy188I TCNGA 4 cut(s) 132, 207, 360, 507
Hpy188III TCNNGA 2 cut(s) 116, 550
Hpy8I GTNNAC 2 cut(s) 169, 343
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 2 cut(s) 365, 488
HpyCH4V TGCA 3 cut(s) 127, 565, 577
HpyF3I CTNAG 5 cut(s) 99, 161, 258, 357, 471
Hsp92II CATG 3 cut(s) 196, 341, 391
Ksp22I TGATCA 1 cut(s) 438
KspAI GTTAAC 1 cut(s) 343
Kzo9I GATC 2 cut(s) 438, 452
LpnPI CCDG 9 cut(s) 74, 92, 205, 242, 245, 254, 463, 514, 535
LweI GCATC 2 cut(s) 112, 136
MaeI CTAG 2 cut(s) 23, 525
MalI GATC 2 cut(s) 440, 454
MboI GATC 2 cut(s) 438, 452
MboII GAAGA 1 cut(s) 85
MflI RGATCY 1 cut(s) 452
MluCI AATT 1 cut(s) 516
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 6 cut(s) 126, 361, 366, 390, 456, 521
Mph1103I ATGCAT 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 383
MseI TTAA 3 cut(s) 330, 342, 510
MspI CCGG 3 cut(s) 61, 229, 241
MspR9I CCNGG 1 cut(s) 230
NciI CCSGG 1 cut(s) 230
NdeII GATC 2 cut(s) 438, 452
NlaIII CATG 3 cut(s) 196, 341, 391
NlaIV GGNNCC 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 129
NspI RCATGY 1 cut(s) 341
PceI AGGCCT 1 cut(s) 481
PciI ACATGT 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 4 cut(s) 112, 208, 223, 497
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PscI ACATGT 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 2 cut(s) 166, 408
PsuI RGATCY 1 cut(s) 452
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SaqAI TTAA 3 cut(s) 330, 342, 510
Sau3AI GATC 2 cut(s) 438, 452
Sau96I GGNCC 2 cut(s) 166, 408
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 230
SetI ASST 5 cut(s) 22, 34, 264, 372, 448
SfaNI GCATC 2 cut(s) 112, 136
SinI GGWCC 2 cut(s) 166, 408
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
Sse9I AATT 1 cut(s) 516
SseBI AGGCCT 1 cut(s) 481
SsiI CCGC 2 cut(s) 52, 531
SspMI CTAG 2 cut(s) 23, 525
StuI AGGCCT 1 cut(s) 481
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 2 cut(s) 365, 488
TaqI TCGA 2 cut(s) 115, 428
TaqII GACCGA 1 cut(s) 396
TasI AATT 1 cut(s) 516
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 4 cut(s) 112, 208, 223, 497
Tru1I TTAA 3 cut(s) 330, 342, 510
Tru9I TTAA 3 cut(s) 330, 342, 510
TscAI CASTG 2 cut(s) 493, 572
TspDTI ATGAA 2 cut(s) 260, 376
TspRI CASTG 2 cut(s) 493, 572
VpaK11BI GGWCC 2 cut(s) 166, 408
XceI RCATGY 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 2 cut(s) 23, 525
Zsp2I ATGCAT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.