Rroxscaffold_3G00247710

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013279
Physical Location & Seq
Reverse (-)
41117505 .. 41119859
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247710.1

Sequence Viewer

Length: 600 bp
ATGGTGCTATGGGAGATCACATTGGGAACCGCCTATTTCTTGGGTCTCAGACGAACCTATAGACTCGCCCTCAGGATGCAGCGCCGCATCATCAGCCCTAAGCACCCCAAGATCCGTCAATTTGCTCACAGGCGAACGCGTGCCGTTTTTGACGCTGCGGTGAGTGTTCACAAGAACATACAGCAAAGAGACATAGACTTGGGTCGGAACCTTGGGAACTGGATCCTGCGTTGGCTTGATCGGATGAAACCTTCAGCTAATATTCGAGGTTCGTCTGAACAGCTCAAACACTTAAATGGTGCTAGCTCGGGCATGAGCATGACAAAGCAGGTAAACTCATCCCACCTGAAAACTCCAGGTAGCACCCAGATCAGAAATCAGGAATCTGATAGGCATATGTTTTCATCTATGACAAATGCGCTGCCTAAAAACCTCCCTTCGATTTCCATGATGATGAGAGCAAGAAAGACTTCTGGGACTATGACCCAGTATAGGAACTTGTTCACTAACAGACCTGAATCATTTAGGTCGGATTACACCCGAGGTGGCTTTGGGGGAATTATACGTAAGGATATAATGCAGTGGGTGCAGCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

23.08

Weight (kDa)

11.72

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32260 AT2G35480 AT2G35480
fragaria_vesca FvH4_5g22890 FvH4_5g22890
malus_domestica MD06G1025400.v1.1
prunus_persica Prupe.5G029700_v2.0.a1
pyrus_communis pycom06g02050
rosa_chinensis RchiOBHm_Chr7g0211591
rosa_laevigata RLG00000002996
rosa_multiflora Rmu_sc0003760.1_g000037
rosa_roxburghii Rroxscaffold_3G00247710
rosa_rugosa Rorug07G0126100
rosa_samantha Rh7AG258500 Rh7BG252800 Rh7CG275600 Rh7DG266100
rosa_wichuraiana Rw7G022110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 319
AccII CGCG 1 cut(s) 139
AciI CCGC 3 cut(s) 30, 85, 158
AclWI GGATC 3 cut(s) 106, 217, 230
AcuI CTGAAG 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 492
AflIII ACRYGT 1 cut(s) 137
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 3 cut(s) 257, 283, 306
AluI AGCT 3 cut(s) 257, 283, 306
Alw26I GTCTC 2 cut(s) 50, 183
AlwI GGATC 3 cut(s) 106, 217, 230
Ama87I CYCGRG 2 cut(s) 307, 540
ApeKI GCWGC 4 cut(s) 79, 155, 421, 589
Asp700I GAANNNNTTC 2 cut(s) 469, 500
AspLEI GCGC 2 cut(s) 84, 421
AsuHPI GGTGA 1 cut(s) 172
AsuNHI GCTAGC 1 cut(s) 302
AvaI CYCGRG 2 cut(s) 307, 540
AxyI CCTNAGG 1 cut(s) 71
BamHI GGATCC 1 cut(s) 222
BbvI GCAGC 3 cut(s) 91, 142, 408
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 50, 183
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 58
BfoI RGCGCY 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 5 cut(s) 80, 85, 156, 422, 590
BlsI GCNGC 5 cut(s) 81, 86, 157, 423, 591
Bme1390I CCNGG 1 cut(s) 357
BmeT110I CYCGRG 2 cut(s) 307, 540
BmiI GGNNCC 3 cut(s) 28, 209, 224
BmrFI CCNGG 1 cut(s) 357
BmrI ACTGGG 1 cut(s) 481
BmsI GCATC 2 cut(s) 66, 96
BmtI GCTAGC 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 481
BoxI GACNNNNGTC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 566
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 211, 541
Bsc4I CCNNNNNNNGG 1 cut(s) 492
Bse1I ACTGG 2 cut(s) 224, 487
Bse21I CCTNAGG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 211, 541
BseGI GGATG 3 cut(s) 81, 249, 338
BseLI CCNNNNNNNGG 1 cut(s) 492
BseMII CTCAG 2 cut(s) 61, 85
BseNI ACTGG 2 cut(s) 224, 487
BseXI GCAGC 3 cut(s) 91, 142, 408
Bsh1236I CGCG 1 cut(s) 139
BsiHKCI CYCGRG 2 cut(s) 307, 540
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 1 cut(s) 492
BsmAI GTCTC 2 cut(s) 50, 183
BsmFI GGGAC 1 cut(s) 490
Bso31I GGTCTC 1 cut(s) 50
BsoBI CYCGRG 2 cut(s) 307, 540
Bsp143I GATC 5 cut(s) 15, 111, 222, 238, 369
BspACI CCGC 3 cut(s) 30, 85, 158
BspCNI CTCAG 2 cut(s) 60, 84
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 3 cut(s) 28, 209, 224
BspMI ACCTGC 1 cut(s) 319
BspOI GCTAGC 1 cut(s) 306
BspPI GGATC 3 cut(s) 106, 217, 230
BspTNI GGTCTC 1 cut(s) 50
BsrI ACTGG 2 cut(s) 224, 487
BssECI CCNNGG 2 cut(s) 211, 541
BssMI GATC 5 cut(s) 15, 111, 222, 238, 369
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 586
BstBAI YACGTR 1 cut(s) 566
BstC8I GCNNGC 2 cut(s) 141, 304
BstDEI CTNAG 3 cut(s) 47, 71, 99
BstF5I GGATG 3 cut(s) 81, 249, 338
BstFNI CGCG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 2 cut(s) 84, 421
BstKTI GATC 5 cut(s) 18, 114, 225, 241, 372
BstMAI GTCTC 2 cut(s) 50, 183
BstMBI GATC 5 cut(s) 15, 111, 222, 238, 369
BstMWI GCNNNNNNNGC 2 cut(s) 93, 586
BstNI CCWGG 1 cut(s) 357
BstPAI GACNNNNGTC 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 58
BstSNI TACGTA 1 cut(s) 566
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 91, 142, 408
BstX2I RGATCY 2 cut(s) 111, 222
BstYI RGATCY 2 cut(s) 111, 222
Bsu36I CCTNAGG 1 cut(s) 71
BtsCI GGATG 3 cut(s) 81, 249, 338
BtsI GCAGTG 1 cut(s) 587
BtsIMutI CAGTG 1 cut(s) 587
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 141, 304
CfoI GCGC 2 cut(s) 84, 421
CseI GACGC 1 cut(s) 161
CviAII CATG 3 cut(s) 313, 319, 448
CviJI RGCY 6 cut(s) 96, 235, 257, 283, 306, 549
CviKI_1 RGCY 6 cut(s) 96, 235, 257, 283, 306, 549
DdeI CTNAG 3 cut(s) 47, 71, 99
DpnI GATC 5 cut(s) 17, 113, 224, 240, 371
DpnII GATC 5 cut(s) 15, 111, 222, 238, 369
Eco105I TACGTA 1 cut(s) 566
Eco130I CCWWGG 1 cut(s) 211
Eco31I GGTCTC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 237
Eco81I CCTNAGG 1 cut(s) 71
Eco88I CYCGRG 2 cut(s) 307, 540
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 3 cut(s) 316, 322, 451
FalI AAGNNNNNCTT 2 cut(s) 454, 486
FaqI GGGAC 1 cut(s) 490
FatI CATG 3 cut(s) 312, 318, 447
FauNDI CATATG 1 cut(s) 396
Fnu4HI GCNGC 5 cut(s) 80, 85, 156, 422, 590
FokI GGATG 3 cut(s) 88, 256, 325
Fsp4HI GCNGC 5 cut(s) 80, 85, 156, 422, 590
FspBI CTAG 1 cut(s) 303
GlaI GCGC 2 cut(s) 83, 420
GluI GCNGC 5 cut(s) 80, 85, 156, 422, 590
GsuI CTGGAG 1 cut(s) 339
HaeII RGCGCY 1 cut(s) 85
HgaI GACGC 1 cut(s) 161
HhaI GCGC 2 cut(s) 84, 421
Hin1II CATG 3 cut(s) 316, 322, 451
Hin6I GCGC 2 cut(s) 82, 419
HinP1I GCGC 2 cut(s) 82, 419
HinfI GANTC 3 cut(s) 63, 383, 518
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 3 cut(s) 169, 334, 504
Hpy188I TCNGA 7 cut(s) 50, 207, 243, 277, 374, 388, 532
Hpy188III TCNNGA 2 cut(s) 73, 380
Hpy8I GTNNAC 3 cut(s) 169, 334, 504
HpyAV CCTTC 2 cut(s) 261, 447
HpyCH4IV ACGT 1 cut(s) 565
HpyCH4V TGCA 3 cut(s) 79, 580, 589
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 586
HpyF3I CTNAG 3 cut(s) 47, 71, 99
HpySE526I ACGT 1 cut(s) 565
Hsp92II CATG 3 cut(s) 316, 322, 451
HspAI GCGC 2 cut(s) 82, 419
Kzo9I GATC 5 cut(s) 15, 111, 222, 238, 369
Lsp1109I GCAGC 3 cut(s) 91, 142, 408
LweI GCATC 2 cut(s) 66, 96
MaeI CTAG 1 cut(s) 303
MaeII ACGT 1 cut(s) 565
MalI GATC 5 cut(s) 17, 113, 224, 240, 371
MboI GATC 5 cut(s) 15, 111, 222, 238, 369
MflI RGATCY 2 cut(s) 111, 222
MluCI AATT 2 cut(s) 119, 558
MluI ACGCGT 1 cut(s) 137
MlyI GAGTC 1 cut(s) 57
MmeI TCCRAC 2 cut(s) 185, 510
MnlI CCTC 4 cut(s) 80, 260, 443, 536
MroXI GAANNNNTTC 2 cut(s) 469, 500
MseI TTAA 1 cut(s) 293
MslI CAYNNNNRTG 3 cut(s) 294, 317, 452
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 2 cut(s) 93, 586
NdeI CATATG 1 cut(s) 396
NdeII GATC 5 cut(s) 15, 111, 222, 238, 369
NheI GCTAGC 1 cut(s) 302
NlaIII CATG 3 cut(s) 316, 322, 451
NlaIV GGNNCC 3 cut(s) 28, 209, 224
PdmI GAANNNNTTC 2 cut(s) 469, 500
PfeI GAWTC 2 cut(s) 383, 518
PkrI GCNGC 5 cut(s) 81, 86, 157, 423, 591
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
Ppu21I YACGTR 1 cut(s) 566
PshAI GACNNNNGTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 3 cut(s) 28, 209, 224
PsuI RGATCY 2 cut(s) 111, 222
RseI CAYNNNNRTG 3 cut(s) 294, 317, 452
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 5 cut(s) 80, 85, 156, 422, 590
Sau3AI GATC 5 cut(s) 15, 111, 222, 238, 369
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 357
SfaNI GCATC 2 cut(s) 66, 96
SfcI CTRYAG 1 cut(s) 58
SmiMI CAYNNNNRTG 3 cut(s) 294, 317, 452
SnaBI TACGTA 1 cut(s) 566
Sse9I AATT 2 cut(s) 119, 558
SsiI CCGC 3 cut(s) 30, 85, 158
SspI AATATT 1 cut(s) 262
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 211
TaiI ACGT 1 cut(s) 568
TaqI TCGA 2 cut(s) 265, 440
TasI AATT 2 cut(s) 119, 558
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 2 cut(s) 383, 518
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 1 cut(s) 587
TseI GCWGC 4 cut(s) 79, 155, 421, 589
TspDTI ATGAA 2 cut(s) 260, 393
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 1 cut(s) 587
XmnI GAANNNNTTC 2 cut(s) 469, 500
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.