Rh7CG275600

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013279
Physical Location & Seq
Forward (+)
27631822 .. 27633394
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG275600.1

Sequence Viewer

Length: 603 bp
ATGGTGCTATGGGAGATCACATTGGGAACCGCCTATTTCTTGGGTCTCAGACGAACCTATAGACTCGCACTGAGGATGCAGCGCCGCATCATCAGCCCGAAGCACCCCAAGATCCGTCAATTTGCTCACAGGCGAACGCGTGCCGTTTTTGACGCCGCGGTGAGTGTTCACAAGAACATACAGCAAAGAGACATAGACTTGGGTCGGAACCTTGGGAACTGGATCCTGCGTTGGCTTGATCGGATGAAACCTTCAGCTAATATTCGAGGTTCGTCTGAACAACTCAAACACTTTAAAAATGGTGCTAGCTCGGGCGTGAGCATGACAAAGCAGGTAAACTCATCCCACCTGAAAACTCCAGGGAGCACCCAGATCAGAAATCAGGAATCTGATAGGCATATGTTTTCATCTATGACAAATGCGCTGCCCAAAACCCTCCCTTCGATTTCCATGATGATGAGAGCAAGACAGACTTCTGGGACTATGACCCAGTATAGGAACTTATTCACTAACAGACCTGAAGCATTGAGGTCGGATTACACCCGAGGTGGCTTTGGGGGAATTATACGTAAGGATATAATGCAGTGGATGCAGCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

23.18

Weight (kDa)

11.72

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32260 AT2G35480 AT2G35480
fragaria_vesca FvH4_5g22890 FvH4_5g22890
malus_domestica MD06G1025400.v1.1
prunus_persica Prupe.5G029700_v2.0.a1
pyrus_communis pycom06g02050
rosa_chinensis RchiOBHm_Chr7g0211591
rosa_laevigata RLG00000002996
rosa_multiflora Rmu_sc0003760.1_g000037
rosa_roxburghii Rroxscaffold_3G00247710
rosa_rugosa Rorug07G0126100
rosa_samantha Rh7AG258500 Rh7BG252800 Rh7CG275600 Rh7DG266100
rosa_wichuraiana Rw7G022110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 322
AccII CGCG 2 cut(s) 139, 158
AciI CCGC 4 cut(s) 30, 85, 156, 158
AclWI GGATC 3 cut(s) 106, 217, 230
AcuI CTGAAG 2 cut(s) 237, 540
AcyI GRCGYC 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 495
AflIII ACRYGT 1 cut(s) 137
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 2 cut(s) 257, 309
AluI AGCT 2 cut(s) 257, 309
Alw21I GWGCWC 1 cut(s) 368
Alw26I GTCTC 2 cut(s) 50, 183
AlwI GGATC 3 cut(s) 106, 217, 230
Ama87I CYCGRG 2 cut(s) 310, 543
ApeKI GCWGC 3 cut(s) 79, 424, 592
Asp700I GAANNNNTTC 1 cut(s) 503
AspLEI GCGC 2 cut(s) 84, 424
AsuHPI GGTGA 1 cut(s) 172
AsuNHI GCTAGC 1 cut(s) 305
AvaI CYCGRG 2 cut(s) 310, 543
BamHI GGATCC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 368
BbvI GCAGC 2 cut(s) 91, 411
BceAI ACGGC 1 cut(s) 128
BcgI CGANNNNNNTGC 2 cut(s) 513, 547
BciT130I CCWGG 1 cut(s) 360
BcoDI GTCTC 2 cut(s) 50, 183
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 58
BfoI RGCGCY 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 5 cut(s) 80, 85, 156, 425, 593
BlsI GCNGC 5 cut(s) 81, 86, 157, 426, 594
Bme1390I CCNGG 1 cut(s) 360
BmeT110I CYCGRG 2 cut(s) 310, 543
BmiI GGNNCC 3 cut(s) 28, 209, 224
BmrFI CCNGG 1 cut(s) 360
BmrI ACTGGG 1 cut(s) 484
BmsI GCATC 3 cut(s) 66, 96, 579
BmtI GCTAGC 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 484
BoxI GACNNNNGTC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 569
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 4 cut(s) 156, 211, 359, 544
Bsc4I CCNNNNNNNGG 1 cut(s) 495
Bse1I ACTGG 2 cut(s) 224, 490
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 4 cut(s) 156, 211, 359, 544
BseGI GGATG 4 cut(s) 81, 249, 341, 594
BseLI CCNNNNNNNGG 1 cut(s) 495
BseMII CTCAG 2 cut(s) 61, 62
BseNI ACTGG 2 cut(s) 224, 490
BseXI GCAGC 2 cut(s) 91, 411
Bsh1236I CGCG 2 cut(s) 139, 158
BsiHKAI GWGCWC 1 cut(s) 368
BsiHKCI CYCGRG 2 cut(s) 310, 543
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 1 cut(s) 495
BsmAI GTCTC 2 cut(s) 50, 183
BsmFI GGGAC 1 cut(s) 493
Bso31I GGTCTC 1 cut(s) 50
BsoBI CYCGRG 2 cut(s) 310, 543
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 5 cut(s) 15, 111, 222, 238, 372
BspACI CCGC 4 cut(s) 30, 85, 156, 158
BspCNI CTCAG 2 cut(s) 60, 63
BspFNI CGCG 2 cut(s) 139, 158
BspLI GGNNCC 3 cut(s) 28, 209, 224
BspMI ACCTGC 1 cut(s) 322
BspOI GCTAGC 1 cut(s) 309
BspPI GGATC 3 cut(s) 106, 217, 230
BspTNI GGTCTC 1 cut(s) 50
BsrI ACTGG 2 cut(s) 224, 490
BssECI CCNNGG 4 cut(s) 156, 211, 359, 544
BssMI GATC 5 cut(s) 15, 111, 222, 238, 372
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 360
BstACI GRCGYC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 589
BstBAI YACGTR 1 cut(s) 569
BstC8I GCNNGC 2 cut(s) 141, 307
BstDEI CTNAG 2 cut(s) 47, 71
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 4 cut(s) 81, 249, 341, 594
BstFNI CGCG 2 cut(s) 139, 158
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 2 cut(s) 84, 424
BstKTI GATC 5 cut(s) 18, 114, 225, 241, 375
BstMAI GTCTC 2 cut(s) 50, 183
BstMBI GATC 5 cut(s) 15, 111, 222, 238, 372
BstMWI GCNNNNNNNGC 2 cut(s) 93, 589
BstNI CCWGG 1 cut(s) 360
BstPAI GACNNNNGTC 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 1 cut(s) 58
BstSNI TACGTA 1 cut(s) 569
BstUI CGCG 2 cut(s) 139, 158
BstV1I GCAGC 2 cut(s) 91, 411
BstX2I RGATCY 2 cut(s) 111, 222
BstYI RGATCY 2 cut(s) 111, 222
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 4 cut(s) 81, 249, 341, 594
BtsI GCAGTG 1 cut(s) 590
BtsIMutI CAGTG 2 cut(s) 68, 590
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 2 cut(s) 141, 307
CfoI GCGC 2 cut(s) 84, 424
Cfr42I CCGCGG 1 cut(s) 159
CseI GACGC 1 cut(s) 161
CviAII CATG 2 cut(s) 322, 451
CviJI RGCY 5 cut(s) 96, 235, 257, 309, 552
CviKI_1 RGCY 5 cut(s) 96, 235, 257, 309, 552
DdeI CTNAG 2 cut(s) 47, 71
DpnI GATC 5 cut(s) 17, 113, 224, 240, 374
DpnII GATC 5 cut(s) 15, 111, 222, 238, 372
DraI TTTAAA 1 cut(s) 295
Eco105I TACGTA 1 cut(s) 569
Eco130I CCWWGG 1 cut(s) 211
Eco31I GGTCTC 1 cut(s) 50
Eco57I CTGAAG 2 cut(s) 237, 540
Eco88I CYCGRG 2 cut(s) 310, 543
EcoRII CCWGG 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 2 cut(s) 325, 454
FalI AAGNNNNNCTT 2 cut(s) 457, 489
FaqI GGGAC 1 cut(s) 493
FatI CATG 2 cut(s) 321, 450
FauNDI CATATG 1 cut(s) 399
Fnu4HI GCNGC 5 cut(s) 80, 85, 156, 425, 593
FokI GGATG 3 cut(s) 88, 256, 328
Fsp4HI GCNGC 5 cut(s) 80, 85, 156, 425, 593
FspBI CTAG 1 cut(s) 306
GlaI GCGC 2 cut(s) 83, 423
GluI GCNGC 5 cut(s) 80, 85, 156, 425, 593
GsuI CTGGAG 1 cut(s) 342
HaeII RGCGCY 1 cut(s) 85
HgaI GACGC 1 cut(s) 161
HhaI GCGC 2 cut(s) 84, 424
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 2 cut(s) 325, 454
Hin6I GCGC 2 cut(s) 82, 422
HinP1I GCGC 2 cut(s) 82, 422
HinfI GANTC 2 cut(s) 63, 386
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 169, 337
Hpy188I TCNGA 7 cut(s) 50, 207, 243, 277, 377, 391, 535
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 2 cut(s) 169, 337
HpyAV CCTTC 2 cut(s) 261, 450
HpyCH4IV ACGT 1 cut(s) 568
HpyCH4V TGCA 3 cut(s) 79, 583, 592
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 589
HpyF3I CTNAG 2 cut(s) 47, 71
HpySE526I ACGT 1 cut(s) 568
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 2 cut(s) 325, 454
HspAI GCGC 2 cut(s) 82, 422
KspI CCGCGG 1 cut(s) 159
Kzo9I GATC 5 cut(s) 15, 111, 222, 238, 372
LmnI GCTCC 1 cut(s) 363
Lsp1109I GCAGC 2 cut(s) 91, 411
LweI GCATC 3 cut(s) 66, 96, 579
MaeI CTAG 1 cut(s) 306
MaeII ACGT 1 cut(s) 568
MalI GATC 5 cut(s) 17, 113, 224, 240, 374
MboI GATC 5 cut(s) 15, 111, 222, 238, 372
MflI RGATCY 2 cut(s) 111, 222
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 3 cut(s) 119, 561, 598
MluI ACGCGT 1 cut(s) 137
MlyI GAGTC 1 cut(s) 57
MmeI TCCRAC 2 cut(s) 185, 513
MnlI CCTC 5 cut(s) 66, 260, 446, 522, 539
MroXI GAANNNNTTC 1 cut(s) 503
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
MvnI CGCG 2 cut(s) 139, 158
MwoI GCNNNNNNNGC 2 cut(s) 93, 589
NdeI CATATG 1 cut(s) 399
NdeII GATC 5 cut(s) 15, 111, 222, 238, 372
NheI GCTAGC 1 cut(s) 305
NlaIII CATG 2 cut(s) 325, 454
NlaIV GGNNCC 3 cut(s) 28, 209, 224
PdmI GAANNNNTTC 1 cut(s) 503
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 5 cut(s) 81, 86, 157, 426, 594
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
Ppu21I YACGTR 1 cut(s) 569
PshAI GACNNNNGTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 3 cut(s) 28, 209, 224
PsuI RGATCY 2 cut(s) 111, 222
RseI CAYNNNNRTG 1 cut(s) 455
SacII CCGCGG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 5 cut(s) 80, 85, 156, 425, 593
Sau3AI GATC 5 cut(s) 15, 111, 222, 238, 372
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 368
SfaNI GCATC 3 cut(s) 66, 96, 579
SfcI CTRYAG 1 cut(s) 58
Sfr303I CCGCGG 1 cut(s) 159
SgrBI CCGCGG 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 455
SnaBI TACGTA 1 cut(s) 569
Sse9I AATT 3 cut(s) 119, 561, 598
SsiI CCGC 4 cut(s) 30, 85, 156, 158
SspI AATATT 1 cut(s) 262
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 358
StyI CCWWGG 1 cut(s) 211
TaiI ACGT 1 cut(s) 571
TaqI TCGA 2 cut(s) 265, 443
TasI AATT 3 cut(s) 119, 561, 598
TauI GCSGC 2 cut(s) 87, 158
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 2 cut(s) 75, 590
TseI GCWGC 3 cut(s) 79, 424, 592
TspDTI ATGAA 2 cut(s) 260, 396
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 2 cut(s) 75, 590
XmnI GAANNNNTTC 1 cut(s) 503
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.