FvH4_5g22890

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013279
Physical Location & Seq
Forward (+)
14177671 .. 14179994
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22890.t2

Sequence Viewer

Length: 600 bp
ATGGTGCTGTGGGAGATCACATTGGGAACCGCCTATTTCTTGGGTCTGAGACGAACTTATAGACTCGCCTTGAGGATTCAGCGCCGCGTCATTAGCCCTAAGCACCCAAAGATCCGCGAGTTTGCTCACAGGCGAACTCGTGCCGTGTTTGACGTAGCGGTCAGTGTTCACAAGAACATACAGCAAAGAGACATAGATTTGGGTCGGAACCTTGGGAACTGGATCCTACGTTGGCTTGATCGGATGAAACCATCAGCTAATATTCGAGCTCCGCCTGAACTCAAACTCCCTAAAAATGGTTCTAGCTCGGGTATGAGCATGACGAAGCAGGTAAACTCATCCCACCAGAAAAATCCAGGCAACACCCATATCAGAAATCAGGAATCTGATAGGCATATGTTTTCATCAATCACAAATGGGCTGCCTAAAACCCTCCCTTCAATTTCCATGATGATGAGAGCAAGAAGGACTTCTGGGACTATGACTCAGTATAGGAACTTATTCACTAACAGACCTGATGCATTTAGGCCAGACTACAACCGAGGTAGCTTTGGGGGAGTTATACGTAAGGATATAATGCAGTGGATGCAGCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

23.17

Weight (kDa)

11.69

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32260 AT2G35480 AT2G35480
fragaria_vesca FvH4_5g22890 FvH4_5g22890
malus_domestica MD06G1025400.v1.1
prunus_persica Prupe.5G029700_v2.0.a1
pyrus_communis pycom06g02050
rosa_chinensis RchiOBHm_Chr7g0211591
rosa_laevigata RLG00000002996
rosa_multiflora Rmu_sc0003760.1_g000037
rosa_roxburghii Rroxscaffold_3G00247710
rosa_rugosa Rorug07G0126100
rosa_samantha Rh7AG258500 Rh7BG252800 Rh7CG275600 Rh7DG266100
rosa_wichuraiana Rw7G022110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 319
AccII CGCG 2 cut(s) 87, 117
AciI CCGC 5 cut(s) 30, 85, 115, 158, 272
AclWI GGATC 3 cut(s) 106, 217, 230
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 1 cut(s) 441
AjnI CCWGG 1 cut(s) 355
AloI GAACNNNNNNTCC 2 cut(s) 270, 302
AluBI AGCT 4 cut(s) 257, 269, 306, 549
AluI AGCT 4 cut(s) 257, 269, 306, 549
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 2 cut(s) 43, 183
AlwI GGATC 3 cut(s) 106, 217, 230
Ama87I CYCGRG 1 cut(s) 307
AoxI GGCC 1 cut(s) 527
ApeKI GCWGC 2 cut(s) 421, 589
Asp700I GAANNNNTTC 2 cut(s) 469, 500
AspLEI GCGC 1 cut(s) 84
AvaI CYCGRG 1 cut(s) 307
BamHI GGATCC 1 cut(s) 222
BanII GRGCYC 1 cut(s) 271
BauI CACGAG 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 408
BccI CCATC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 43, 183
BfaI CTAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 3 cut(s) 85, 422, 590
BlsI GCNGC 3 cut(s) 86, 423, 591
Bme1390I CCNGG 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 307
BmiI GGNNCC 3 cut(s) 28, 209, 224
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 2 cut(s) 508, 576
Bpu10I CCTNAGC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 91
BsaAI YACGTR 1 cut(s) 566
BsaJI CCNNGG 2 cut(s) 211, 541
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 211, 541
BseGI GGATG 3 cut(s) 249, 338, 591
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 2 cut(s) 38, 500
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 408
Bsh1236I CGCG 2 cut(s) 87, 117
BshFI GGCC 1 cut(s) 529
BsiHKAI GWGCWC 1 cut(s) 271
BsiHKCI CYCGRG 1 cut(s) 307
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 2 cut(s) 43, 183
BsmBI CGTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 490
BsnI GGCC 1 cut(s) 529
BsoBI CYCGRG 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 4 cut(s) 15, 111, 222, 238
BspACI CCGC 5 cut(s) 30, 85, 115, 158, 272
BspANI GGCC 1 cut(s) 529
BspCNI CTCAG 2 cut(s) 39, 499
BspFNI CGCG 2 cut(s) 87, 117
BspLI GGNNCC 3 cut(s) 28, 209, 224
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 3 cut(s) 106, 217, 230
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 211, 541
BssMI GATC 4 cut(s) 15, 111, 222, 238
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 586
BstBAI YACGTR 1 cut(s) 566
BstDEI CTNAG 3 cut(s) 47, 99, 486
BstF5I GGATG 3 cut(s) 249, 338, 591
BstFNI CGCG 2 cut(s) 87, 117
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 4 cut(s) 18, 114, 225, 241
BstMAI GTCTC 2 cut(s) 43, 183
BstMBI GATC 4 cut(s) 15, 111, 222, 238
BstMWI GCNNNNNNNGC 2 cut(s) 93, 586
BstNI CCWGG 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 355
BstSNI TACGTA 1 cut(s) 566
BstUI CGCG 2 cut(s) 87, 117
BstV1I GCAGC 1 cut(s) 408
BstX2I RGATCY 2 cut(s) 111, 222
BstYI RGATCY 2 cut(s) 111, 222
BsuRI GGCC 1 cut(s) 529
BtsCI GGATG 3 cut(s) 249, 338, 591
BtsI GCAGTG 1 cut(s) 587
BtsIMutI CAGTG 2 cut(s) 169, 587
BveI ACCTGC 1 cut(s) 319
CfoI GCGC 1 cut(s) 84
CseI GACGC 1 cut(s) 76
CviAII CATG 2 cut(s) 319, 448
CviJI RGCY 8 cut(s) 96, 235, 257, 269, 306, 421, 529, 549
CviKI_1 RGCY 8 cut(s) 96, 235, 257, 269, 306, 421, 529, 549
DdeI CTNAG 3 cut(s) 47, 99, 486
DpnI GATC 4 cut(s) 17, 113, 224, 240
DpnII GATC 4 cut(s) 15, 111, 222, 238
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 261
Ecl136II GAGCTC 1 cut(s) 269
Eco105I TACGTA 1 cut(s) 566
Eco130I CCWWGG 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 307
EcoICRI GAGCTC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 523
EcoT38I GRGCYC 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 211
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 2 cut(s) 322, 451
FalI AAGNNNNNCTT 2 cut(s) 454, 486
FaqI GGGAC 1 cut(s) 490
FatI CATG 2 cut(s) 318, 447
FauNDI CATATG 1 cut(s) 396
Fnu4HI GCNGC 3 cut(s) 85, 422, 590
FokI GGATG 2 cut(s) 256, 325
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 3 cut(s) 85, 422, 590
FspBI CTAG 1 cut(s) 303
GlaI GCGC 1 cut(s) 83
GluI GCNGC 3 cut(s) 85, 422, 590
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 1 cut(s) 529
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 322, 451
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 4 cut(s) 63, 76, 383, 484
Hpy166II GTNNAC 2 cut(s) 169, 334
Hpy188I TCNGA 5 cut(s) 48, 207, 243, 374, 388
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 2 cut(s) 169, 334
HpyAV CCTTC 2 cut(s) 447, 459
HpyCH4IV ACGT 3 cut(s) 153, 229, 565
HpyCH4V TGCA 3 cut(s) 521, 580, 589
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 586
HpyF3I CTNAG 3 cut(s) 47, 99, 486
HpySE526I ACGT 3 cut(s) 153, 229, 565
Hsp92II CATG 2 cut(s) 322, 451
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 4 cut(s) 15, 111, 222, 238
LmnI GCTCC 1 cut(s) 274
Lsp1109I GCAGC 1 cut(s) 408
LweI GCATC 2 cut(s) 508, 576
MaeI CTAG 1 cut(s) 303
MaeII ACGT 3 cut(s) 153, 229, 565
MalI GATC 4 cut(s) 17, 113, 224, 240
MboI GATC 4 cut(s) 15, 111, 222, 238
MflI RGATCY 2 cut(s) 111, 222
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 2 cut(s) 441, 595
MlyI GAGTC 2 cut(s) 57, 478
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 3 cut(s) 66, 443, 536
Mph1103I ATGCAT 1 cut(s) 523
MroXI GAANNNNTTC 2 cut(s) 469, 500
MslI CAYNNNNRTG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 2 cut(s) 87, 117
MwoI GCNNNNNNNGC 2 cut(s) 93, 586
NdeI CATATG 1 cut(s) 396
NdeII GATC 4 cut(s) 15, 111, 222, 238
NlaIII CATG 2 cut(s) 322, 451
NlaIV GGNNCC 3 cut(s) 28, 209, 224
NsiI ATGCAT 1 cut(s) 523
PdmI GAANNNNTTC 2 cut(s) 469, 500
PfeI GAWTC 2 cut(s) 76, 383
PkrI GCNGC 3 cut(s) 86, 423, 591
PleI GAGTC 2 cut(s) 57, 478
PpsI GAGTC 2 cut(s) 57, 478
Ppu21I YACGTR 1 cut(s) 566
Psp124BI GAGCTC 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 3 cut(s) 28, 209, 224
PsuI RGATCY 2 cut(s) 111, 222
RseI CAYNNNNRTG 1 cut(s) 452
SacI GAGCTC 1 cut(s) 271
SatI GCNGC 3 cut(s) 85, 422, 590
Sau3AI GATC 4 cut(s) 15, 111, 222, 238
SchI GAGTC 2 cut(s) 57, 478
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 1 cut(s) 271
SfaNI GCATC 2 cut(s) 508, 576
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
SnaBI TACGTA 1 cut(s) 566
Sse9I AATT 2 cut(s) 441, 595
SsiI CCGC 5 cut(s) 30, 85, 115, 158, 272
SspI AATATT 1 cut(s) 262
SspMI CTAG 1 cut(s) 303
SstI GAGCTC 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 211
TaiI ACGT 3 cut(s) 156, 232, 568
TaqI TCGA 1 cut(s) 265
TasI AATT 2 cut(s) 441, 595
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 2 cut(s) 76, 383
TscAI CASTG 2 cut(s) 169, 587
TseI GCWGC 2 cut(s) 421, 589
TspDTI ATGAA 2 cut(s) 260, 393
TspRI CASTG 2 cut(s) 169, 587
XmnI GAANNNNTTC 2 cut(s) 469, 500
XspI CTAG 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.