Prupe.5G029700_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013279
Physical Location & Seq
Reverse (-)
3466559 .. 3468523
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G029700.1

Sequence Viewer

Length: 585 bp
ATGGTGCTGTGGGAGATCACATTAGGAACAGCCTATTTCTTGGGGCTGAGGCGCACTTATAGACTGGCTCTGAAGATTCAGCGACGCCTCATAAGCCCTAAGCACCCCAAGATCCGTCAATTTGCTCACAGGCGAACACGTGCTGTGTTTGATGTAGCTATCAAGGTTCACAAGAGCATACAGGAAAGAGACATAGAAGTTGGTCGAAATCTTGGTAACCGGATCCTACGATGGCTTGATCGGATGAAACCCGAAGCTCAGATTCGGGGTCCTCTGGAAAAACCCCCCACCAGTGCTAGCATGATGAATAAGGTAAACTCCTCCCACCTCAAAACTCCTGGAAGTACCCAGATAACCAGAAATCAGGAATCCGACAGGCATCTGTTTTCAACAATGACCAATATGTGGTCTAAACCCCTTCCTCCAATTACAATGATGATGAGATCACGAAAGCCTTCTGGGATGATAAACCAGTACAGGCACTTATGCATGAATGTGCCTCAACCGTTAAGATCGAACTACAGTGCAGGTGCGTTTGGGGGAGTTATACGGAAAGATATAATGCAGTGGATGCTGCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

22.65

Weight (kDa)

11.52

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32260 AT2G35480 AT2G35480
fragaria_vesca FvH4_5g22890 FvH4_5g22890
malus_domestica MD06G1025400.v1.1
prunus_persica Prupe.5G029700_v2.0.a1
pyrus_communis pycom06g02050
rosa_chinensis RchiOBHm_Chr7g0211591
rosa_laevigata RLG00000002996
rosa_multiflora Rmu_sc0003760.1_g000037
rosa_roxburghii Rroxscaffold_3G00247710
rosa_rugosa Rorug07G0126100
rosa_samantha Rh7AG258500 Rh7BG252800 Rh7CG275600 Rh7DG266100
rosa_wichuraiana Rw7G022110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 518
AccB7I CCANNNNNTGG 1 cut(s) 405
AclWI GGATC 3 cut(s) 106, 217, 230
AcuI CTGAAG 1 cut(s) 92
AcvI CACGTG 1 cut(s) 140
AcyI GRCGYC 1 cut(s) 85
AfaI GTAC 2 cut(s) 346, 476
AfiI CCNNNNNNNGG 1 cut(s) 405
AflIII ACRYGT 1 cut(s) 137
AgsI TTSAA 1 cut(s) 390
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 2 cut(s) 158, 257
AluI AGCT 2 cut(s) 158, 257
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 3 cut(s) 106, 217, 230
ApeKI GCWGC 1 cut(s) 574
Asp700I GAANNNNTTC 1 cut(s) 454
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 269
AsuNHI GCTAGC 1 cut(s) 296
AvaII GGWCC 1 cut(s) 269
BamHI GGATCC 1 cut(s) 222
BbrPI CACGTG 1 cut(s) 140
BbvCI CCTCAGC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 561
BccI CCATC 1 cut(s) 225
BciT130I CCWGG 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 1 cut(s) 520
BfuAI ACCTGC 1 cut(s) 518
BisI GCNGC 1 cut(s) 575
BlsI GCNGC 1 cut(s) 576
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 224, 270
BmrFI CCNGG 1 cut(s) 339
BmsI GCATC 2 cut(s) 388, 561
BmtI GCTAGC 1 cut(s) 300
Bpu10I CCTNAGC 2 cut(s) 47, 99
BsaAI YACGTR 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse1I ACTGG 3 cut(s) 69, 291, 472
BseBI CCWGG 1 cut(s) 339
BseGI GGATG 3 cut(s) 249, 468, 576
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMII CTCAG 2 cut(s) 38, 272
BseNI ACTGG 3 cut(s) 69, 291, 472
BseRI GAGGAG 1 cut(s) 310
BseXI GCAGC 1 cut(s) 561
BsgI GTGCAG 1 cut(s) 546
BsiSI CCGG 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 405
BsmAI GTCTC 1 cut(s) 183
Bsp143I GATC 6 cut(s) 15, 111, 222, 238, 443, 512
BspCNI CTCAG 2 cut(s) 39, 271
BspLI GGNNCC 2 cut(s) 224, 270
BspMI ACCTGC 1 cut(s) 518
BspOI GCTAGC 1 cut(s) 300
BspPI GGATC 3 cut(s) 106, 217, 230
BsrI ACTGG 3 cut(s) 69, 291, 472
BssMI GATC 6 cut(s) 15, 111, 222, 238, 443, 512
BssNI GRCGYC 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 507, 524
BstACI GRCGYC 1 cut(s) 85
BstAPI GCANNNNNTGC 1 cut(s) 571
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 3 cut(s) 47, 99, 258
BstEII GGTNACC 1 cut(s) 215
BstF5I GGATG 3 cut(s) 249, 468, 576
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 6 cut(s) 18, 114, 225, 241, 446, 515
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 6 cut(s) 15, 111, 222, 238, 443, 512
BstMWI GCNNNNNNNGC 2 cut(s) 93, 571
BstNI CCWGG 1 cut(s) 339
BstPI GGTNACC 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 520
BstV1I GCAGC 1 cut(s) 561
BstX2I RGATCY 2 cut(s) 111, 222
BstYI RGATCY 2 cut(s) 111, 222
BtsCI GGATG 3 cut(s) 249, 468, 576
BtsI GCAGTG 1 cut(s) 572
BtsIMutI CAGTG 3 cut(s) 298, 529, 572
BveI ACCTGC 1 cut(s) 518
Cac8I GCNNGC 1 cut(s) 298
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 269
CseI GACGC 1 cut(s) 93
Csp6I GTAC 2 cut(s) 345, 475
CviAII CATG 2 cut(s) 301, 490
CviJI RGCY 8 cut(s) 32, 46, 68, 96, 158, 235, 257, 454
CviKI_1 RGCY 8 cut(s) 32, 46, 68, 96, 158, 235, 257, 454
CviQI GTAC 2 cut(s) 345, 475
DdeI CTNAG 3 cut(s) 47, 99, 258
DpnI GATC 6 cut(s) 17, 113, 224, 240, 445, 514
DpnII GATC 6 cut(s) 15, 111, 222, 238, 443, 512
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 92
Eco72I CACGTG 1 cut(s) 140
Eco91I GGTNACC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 269
EcoO65I GGTNACC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 337
EcoT22I ATGCAT 1 cut(s) 491
FaeI CATG 2 cut(s) 304, 493
FatI CATG 2 cut(s) 300, 489
Fnu4HI GCNGC 1 cut(s) 575
FokI GGATG 2 cut(s) 256, 475
Fsp4HI GCNGC 1 cut(s) 575
FspBI CTAG 1 cut(s) 297
GlaI GCGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 575
HapII CCGG 1 cut(s) 220
HgaI GACGC 1 cut(s) 93
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 85
Hin1II CATG 2 cut(s) 304, 493
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 3 cut(s) 76, 262, 368
HpaII CCGG 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 169, 316
Hpy188I TCNGA 4 cut(s) 72, 243, 261, 373
Hpy188III TCNNGA 3 cut(s) 275, 365, 447
Hpy8I GTNNAC 2 cut(s) 169, 316
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 2 cut(s) 428, 465
HpyCH4III ACNGT 2 cut(s) 507, 524
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 4 cut(s) 489, 527, 565, 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 571
HpyF3I CTNAG 3 cut(s) 47, 99, 258
HpySE526I ACGT 1 cut(s) 139
Hsp92I GRCGYC 1 cut(s) 85
Hsp92II CATG 2 cut(s) 304, 493
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 6 cut(s) 15, 111, 222, 238, 443, 512
Lsp1109I GCAGC 1 cut(s) 561
LweI GCATC 2 cut(s) 388, 561
MaeI CTAG 1 cut(s) 297
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 215
MalI GATC 6 cut(s) 17, 113, 224, 240, 445, 514
MboI GATC 6 cut(s) 15, 111, 222, 238, 443, 512
MboII GAAGA 1 cut(s) 85
MflI RGATCY 2 cut(s) 111, 222
MluCI AATT 2 cut(s) 119, 426
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 7 cut(s) 42, 98, 282, 331, 338, 432, 510
Mph1103I ATGCAT 1 cut(s) 491
MroXI GAANNNNTTC 1 cut(s) 454
MseI TTAA 1 cut(s) 509
MslI CAYNNNNRTG 1 cut(s) 494
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 2 cut(s) 93, 571
NdeII GATC 6 cut(s) 15, 111, 222, 238, 443, 512
NheI GCTAGC 1 cut(s) 296
NlaIII CATG 2 cut(s) 304, 493
NlaIV GGNNCC 2 cut(s) 224, 270
NsiI ATGCAT 1 cut(s) 491
PaqCI CACCTGC 1 cut(s) 518
PdmI GAANNNNTTC 1 cut(s) 454
PfeI GAWTC 3 cut(s) 76, 262, 368
PflMI CCANNNNNTGG 1 cut(s) 405
PfoI TCCNGGA 1 cut(s) 337
PkrI GCNGC 1 cut(s) 576
PmaCI CACGTG 1 cut(s) 140
PmlI CACGTG 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 140
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 337
PspCI CACGTG 1 cut(s) 140
PspEI GGTNACC 1 cut(s) 215
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 224, 270
PspPI GGNCC 1 cut(s) 269
PspPPI RGGWCCY 1 cut(s) 269
PsuI RGATCY 2 cut(s) 111, 222
RsaI GTAC 2 cut(s) 346, 476
RsaNI GTAC 2 cut(s) 345, 475
RseI CAYNNNNRTG 1 cut(s) 494
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 1 cut(s) 575
Sau3AI GATC 6 cut(s) 15, 111, 222, 238, 443, 512
Sau96I GGNCC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 339
SetI ASST 7 cut(s) 142, 160, 168, 259, 315, 330, 532
SfaNI GCATC 2 cut(s) 388, 561
SfcI CTRYAG 1 cut(s) 520
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 494
Sse9I AATT 2 cut(s) 119, 426
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 337
TaaI ACNGT 2 cut(s) 507, 524
TaiI ACGT 1 cut(s) 142
TaqI TCGA 2 cut(s) 205, 515
TasI AATT 2 cut(s) 119, 426
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 3 cut(s) 76, 262, 368
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 3 cut(s) 298, 529, 572
TseI GCWGC 1 cut(s) 574
TspDTI ATGAA 3 cut(s) 260, 320, 506
TspGWI ACGGA 2 cut(s) 104, 565
TspRI CASTG 3 cut(s) 298, 529, 572
Van91I CCANNNNNTGG 1 cut(s) 405
VpaK11BI GGWCC 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 454
XspI CTAG 1 cut(s) 297
Zsp2I ATGCAT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.