Rorug07G0126100

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013279
Physical Location & Seq
Forward (+)
9950897 .. 9953930
3034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0126100.1

Sequence Viewer

Length: 792 bp
ATGGAGCTCCGCCTGTGTAATCCATTTCGTCACATTATTCCTCTTCCTTCAAATTACTCCAATCAAATTACATCTTCCTCCCGAGCTCGTAGCTTATCGGTTCGAAGCTCCCTCTTAGGCCCCAACGAATCACGCAAGCTAGTTTTGGAAGTGAAGGAGAAGCTTGAGAAAGATCATCAAAGTCTTCCAGTAGGCAAAAATGGAAGAGATGATGAGGACTTCATTCTCTGGTTTCTCAAGGACCGAAAATTTTCAGTCCAAGAATCAGTGGAAAAATTGCATAAGGCGATTAAATGGCGTCAAGAATTTGGCGTGTCTGAGTTGTCTCAAGATTCAGTGAAGAACATTGCTGAAACTGGAAAAGCTTTTGTGCACGACTTTCTGGATGTTAATGGTAGACCAGTTCTTATAGTGGATGCTGCTAAGCATTTTCCTGCTGTGCATGATCCTGCTGAGAATGAGAAGCTCTGCGTATTTTTGATTGAGAAGGCATTGGGTGCCCTTCCTGAAGGGAGAGAAGAAATACTCGGAATCTTTGATCTTCGAGGCTTTGGTACAGAGAATTCTGATTTAAAGTTTATAACATTTTTGTTTGATGTATTCTACTATTATTACCCAAAGCGATTGGGCCAAGTCCTCTTCGTGGATGCTCCATTTATATTCAAACCTATTTGGCAGCTTGCAAAACCCTTGTTGAAATCATATGCTTCAGTGGTGAGGTTTTGCTCTGTGGAGACTGTCAGGAAGGAATATTTTACAGAAGCAACACTACCGGCCAAATTTAGAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

30.26

Weight (kDa)

8.3

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 118 - 260 1.1e-24 CRAL/TRIO domain
CRAL_TRIO_2 PF13716 132 - 256 1.8e-08 Divergent CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32260 AT2G35480 AT2G35480
fragaria_vesca FvH4_5g22890 FvH4_5g22890
malus_domestica MD06G1025400.v1.1
prunus_persica Prupe.5G029700_v2.0.a1
pyrus_communis pycom06g02050
rosa_chinensis RchiOBHm_Chr7g0211591
rosa_laevigata RLG00000002996
rosa_multiflora Rmu_sc0003760.1_g000037
rosa_roxburghii Rroxscaffold_3G00247710
rosa_rugosa Rorug07G0126100
rosa_samantha Rh7AG258500 Rh7BG252800 Rh7CG275600 Rh7DG266100
rosa_wichuraiana Rw7G022110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 581
AccB1I GGYRCC 1 cut(s) 497
AccI GTMKAC 1 cut(s) 397
AciI CCGC 1 cut(s) 10
AclWI GGATC 1 cut(s) 440
AcoI YGGCCR 1 cut(s) 774
AcsI RAATTY 4 cut(s) 248, 305, 562, 779
AcuI CTGAAG 2 cut(s) 528, 693
AcyI GRCGYC 1 cut(s) 298
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 1 cut(s) 643
AgsI TTSAA 3 cut(s) 51, 664, 697
AluBI AGCT 9 cut(s) 7, 86, 93, 108, 139, 163, 365, 466, 679
AluI AGCT 9 cut(s) 7, 86, 93, 108, 139, 163, 365, 466, 679
Alw21I GWGCWC 3 cut(s) 9, 88, 375
Alw26I GTCTC 3 cut(s) 330, 728, 780
Alw44I GTGCAC 1 cut(s) 371
AlwI GGATC 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 81
AoxI GGCC 3 cut(s) 118, 628, 774
ApaLI GTGCAC 1 cut(s) 371
ApeKI GCWGC 2 cut(s) 419, 676
ApoI RAATTY 4 cut(s) 248, 305, 562, 779
Asp700I GAANNNNTTC 1 cut(s) 250
AspS9I GGNCC 3 cut(s) 119, 241, 628
AsuHPI GGTGA 1 cut(s) 727
AsuII TTCGAA 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 81
AvaII GGWCC 1 cut(s) 241
BaeGI GKGCMC 2 cut(s) 375, 502
BanI GGYRCC 1 cut(s) 497
BanII GRGCYC 2 cut(s) 9, 88
BarI GAAGNNNNNNTAC 2 cut(s) 753, 785
BbsI GAAGAC 1 cut(s) 176
Bbv12I GWGCWC 3 cut(s) 9, 88, 375
BbvI GCAGC 2 cut(s) 406, 688
BcoDI GTCTC 3 cut(s) 330, 728, 780
BfaI CTAG 1 cut(s) 140
BisI GCNGC 2 cut(s) 420, 677
BlpI GCTNAGC 1 cut(s) 423
BlsI GCNGC 2 cut(s) 421, 678
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 81
BmgT120I GGNCC 3 cut(s) 119, 241, 628
BmiI GGNNCC 2 cut(s) 121, 499
BmsI GCATC 2 cut(s) 406, 637
BpiI GAAGAC 1 cut(s) 176
Bpu1102I GCTNAGC 1 cut(s) 423
Bpu14I TTCGAA 1 cut(s) 103
BpuEI CTTGAG 3 cut(s) 185, 221, 312
BsaHI GRCGYC 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 643
Bse118I RCCGGY 1 cut(s) 772
Bse1I ACTGG 3 cut(s) 188, 361, 401
Bse3DI GCAATG 1 cut(s) 345
BseGI GGATG 3 cut(s) 391, 421, 652
BseLI CCNNNNNNNGG 1 cut(s) 643
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 309, 444
BseNI ACTGG 3 cut(s) 188, 361, 401
BseSI GKGCMC 2 cut(s) 375, 502
BseXI GCAGC 2 cut(s) 406, 688
BshFI GGCC 3 cut(s) 120, 630, 776
BshNI GGYRCC 1 cut(s) 497
BsiHKAI GWGCWC 3 cut(s) 9, 88, 375
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 1 cut(s) 773
BslI CCNNNNNNNGG 1 cut(s) 643
BsmAI GTCTC 3 cut(s) 330, 728, 780
BsnI GGCC 3 cut(s) 120, 630, 776
BsoBI CYCGRG 1 cut(s) 81
Bsp119I TTCGAA 1 cut(s) 103
Bsp1286I GDGCHC 4 cut(s) 9, 88, 375, 502
Bsp143I GATC 3 cut(s) 172, 445, 538
Bsp1720I GCTNAGC 1 cut(s) 423
BspACI CCGC 1 cut(s) 10
BspANI GGCC 3 cut(s) 120, 630, 776
BspCNI CTCAG 2 cut(s) 310, 445
BspLI GGNNCC 2 cut(s) 121, 499
BspPI GGATC 1 cut(s) 440
BspT104I TTCGAA 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 772
BsrI ACTGG 3 cut(s) 188, 361, 401
BssAI RCCGGY 1 cut(s) 772
BssMI GATC 3 cut(s) 172, 445, 538
BssNI GRCGYC 1 cut(s) 298
Bst4CI ACNGT 1 cut(s) 739
Bst6I CTCTTC 3 cut(s) 48, 199, 644
BstACI GRCGYC 1 cut(s) 298
BstAPI GCANNNNNTGC 1 cut(s) 497
BstBI TTCGAA 1 cut(s) 103
BstC8I GCNNGC 2 cut(s) 137, 681
BstDEI CTNAG 4 cut(s) 115, 318, 423, 453
BstF5I GGATG 3 cut(s) 391, 421, 652
BstKTI GATC 3 cut(s) 175, 448, 541
BstMAI GTCTC 3 cut(s) 330, 728, 780
BstMBI GATC 3 cut(s) 172, 445, 538
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstSLI GKGCMC 2 cut(s) 375, 502
BstV1I GCAGC 2 cut(s) 406, 688
BstV2I GAAGAC 1 cut(s) 176
BsuRI GGCC 3 cut(s) 120, 630, 776
BtsCI GGATG 3 cut(s) 391, 421, 652
BtsIMutI CAGTG 3 cut(s) 273, 342, 717
Cac8I GCNNGC 2 cut(s) 137, 681
Cfr10I RCCGGY 1 cut(s) 772
Cfr13I GGNCC 3 cut(s) 119, 241, 628
CseI GACGC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 555
CviAII CATG 1 cut(s) 443
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 4 cut(s) 115, 318, 423, 453
DpnI GATC 3 cut(s) 174, 447, 540
DpnII GATC 3 cut(s) 172, 445, 538
DraI TTTAAA 1 cut(s) 573
EaeI YGGCCR 1 cut(s) 774
Eam1104I CTCTTC 3 cut(s) 48, 199, 644
EarI CTCTTC 3 cut(s) 48, 199, 644
Ecl136II GAGCTC 2 cut(s) 7, 86
Eco24I GRGCYC 2 cut(s) 9, 88
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 2 cut(s) 7, 86
Eco57I CTGAAG 2 cut(s) 528, 693
Eco88I CYCGRG 1 cut(s) 81
EcoICRI GAGCTC 2 cut(s) 7, 86
EcoO109I RGGNCCY 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 562
EcoT38I GRGCYC 2 cut(s) 9, 88
FaeI CATG 1 cut(s) 446
FaiI YATR 7 cut(s) 282, 410, 444, 581, 659, 703, 705
FatI CATG 1 cut(s) 442
FauNDI CATATG 1 cut(s) 703
FblI GTMKAC 1 cut(s) 397
Fnu4HI GCNGC 2 cut(s) 420, 677
FokI GGATG 3 cut(s) 398, 428, 659
FriOI GRGCYC 2 cut(s) 9, 88
Fsp4HI GCNGC 2 cut(s) 420, 677
FspBI CTAG 1 cut(s) 140
GluI GCNGC 2 cut(s) 420, 677
HaeIII GGCC 3 cut(s) 120, 630, 776
HapII CCGG 1 cut(s) 773
HgaI GACGC 1 cut(s) 287
Hin1I GRCGYC 1 cut(s) 298
Hin1II CATG 1 cut(s) 446
HindIII AAGCTT 2 cut(s) 161, 363
HinfI GANTC 4 cut(s) 128, 263, 332, 531
HpaII CCGG 1 cut(s) 773
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 2 cut(s) 373, 398
Hpy188I TCNGA 3 cut(s) 319, 530, 568
Hpy188III TCNNGA 6 cut(s) 81, 302, 329, 383, 506, 742
Hpy8I GTNNAC 2 cut(s) 373, 398
HpyAV CCTTC 6 cut(s) 57, 148, 481, 503, 512, 739
HpyCH4III ACNGT 1 cut(s) 739
HpyCH4V TGCA 4 cut(s) 280, 373, 442, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 4 cut(s) 115, 318, 423, 453
Hsp92I GRCGYC 1 cut(s) 298
Hsp92II CATG 1 cut(s) 446
Kzo9I GATC 3 cut(s) 172, 445, 538
LmnI GCTCC 4 cut(s) 4, 12, 113, 655
Lsp1109I GCAGC 2 cut(s) 406, 688
LweI GCATC 2 cut(s) 406, 637
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 29
MalI GATC 3 cut(s) 174, 447, 540
MboI GATC 3 cut(s) 172, 445, 538
MboII GAAGA 8 cut(s) 35, 66, 176, 216, 352, 530, 533, 631
MhlI GDGCHC 4 cut(s) 9, 88, 375, 502
MluCI AATT 7 cut(s) 52, 66, 248, 275, 305, 562, 779
MnlI CCTC 7 cut(s) 51, 88, 122, 208, 539, 647, 711
MroXI GAANNNNTTC 1 cut(s) 250
MseI TTAA 3 cut(s) 291, 390, 572
MspI CCGG 1 cut(s) 773
MwoI GCNNNNNNNGC 1 cut(s) 497
NdeI CATATG 1 cut(s) 703
NdeII GATC 3 cut(s) 172, 445, 538
NlaIII CATG 1 cut(s) 446
NlaIV GGNNCC 2 cut(s) 121, 499
NmuCI GTSAC 1 cut(s) 29
NspV TTCGAA 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 250
PfeI GAWTC 4 cut(s) 128, 263, 332, 531
PkrI GCNGC 2 cut(s) 421, 678
PsiI TTATAA 1 cut(s) 581
Psp124BI GAGCTC 2 cut(s) 9, 88
PspN4I GGNNCC 2 cut(s) 121, 499
PspPI GGNCC 3 cut(s) 119, 241, 628
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
SacI GAGCTC 2 cut(s) 9, 88
SaqAI TTAA 3 cut(s) 291, 390, 572
SatI GCNGC 2 cut(s) 420, 677
Sau3AI GATC 3 cut(s) 172, 445, 538
Sau96I GGNCC 3 cut(s) 119, 241, 628
SduI GDGCHC 4 cut(s) 9, 88, 375, 502
SfaNI GCATC 2 cut(s) 406, 637
SfuI TTCGAA 1 cut(s) 103
SinI GGWCC 1 cut(s) 241
SmlI CTYRAG 3 cut(s) 164, 236, 327
SmoI CTYRAG 3 cut(s) 164, 236, 327
Sse9I AATT 7 cut(s) 52, 66, 248, 275, 305, 562, 779
SsiI CCGC 1 cut(s) 10
SspI AATATT 1 cut(s) 752
SspMI CTAG 1 cut(s) 140
SstI GAGCTC 2 cut(s) 9, 88
TaaI ACNGT 1 cut(s) 739
TaqI TCGA 2 cut(s) 103, 544
TaqII GACCGA 1 cut(s) 258
TasI AATT 7 cut(s) 52, 66, 248, 275, 305, 562, 779
TfiI GAWTC 4 cut(s) 128, 263, 332, 531
Tru1I TTAA 3 cut(s) 291, 390, 572
Tru9I TTAA 3 cut(s) 291, 390, 572
TscAI CASTG 3 cut(s) 273, 342, 717
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 2 cut(s) 419, 676
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 211
TspRI CASTG 3 cut(s) 273, 342, 717
VneI GTGCAC 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 4 cut(s) 248, 305, 562, 779
XmiI GTMKAC 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 250
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.