AT2G36010

transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
15119516 .. 15123184
3669 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36010.2

Sequence Viewer

Length: 1452 bp
ATGTCCGGTGTCGTACGATCTTCTCCCGGTTCTTCTCAGCCGCCACCGCCGCCGCCGCACCATCCACCGTCATCTCCGGTTCCGGTTACATCTACGCCGGTTATACCACCTATACGTCGTCACTTAGCTTTCGCCTCAACAAAACCTCCGTTTCATCCTTCCGATGATTACCATCGATTTAACCCTTCTTCGCTCAGTAATAATAACGACAGGAGCTTCGTTCATGGTTGTGGTGTTGTAGATCGGGAGGAAGATGCTGTCGTTGTTAGATCTCCTTCACGAAAGAGAAAGGCGACAATGGATATGGTTGTTGCTCCATCTAATAATGGATTCACGAGTTCTGGTTTCACTAACATACCTAGCAGTCCCTGTCAAACTCCTAGAAAAGGGGGCAGAGTCAACATCAAGTCAAAGGCCAAAGGAAACAAGTCAACTCCTCAAACACCCATCTCGACAAACGCTGGTTCTCCTATCACACTTACTCCATCAGGAAGTTGTCGTTATGACAGTTCTTTAGGTCTCCTTACAAAAAAGTTCGTCAATCTAATTAAACAAGCCAAAGATGGAATGCTGGACCTAAACAAAGCTGCAGAAACATTGGAGGTGCAGAAACGACGTATATATGATATTACAAACGTTTTGGAGGGGATAGATCTCATTGAAAAGCCTTTCAAGAATCGAATACTTTGGAAGGGAGTTGATGCGTGTCCTGGCGATGAGGATGCTGACGTATCTGTATTACAGGCAGAAATTGAAAACCTCGCCCTCGAAGAGCAAGCATTAGACAACCAAATCAGACAAACAGAGGAAAGATTAAGAGACCTGAGCGAAAATGAAAAGAATCAGAAATGGCTTTTTGTAACTGAAGAGGATATCAAGAGTTTACCAGGTTTCCAGAACCAGACTCTGATAGCCGTCAAAGCTCCTCATGGCACAACTTTGGAAGTGCCTGATCCAGATGAAGCGGCTGACCACCCACAAAGGAGATACAGGATCATTCTTAGAAGTACAATGGGACCTATTGACGTATACCTCGTCAGCGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGTGCAGCACCACCAGCATGCTTGCCTATTGCTTCTAGCTCAGGATCTACAGGACACCATGACATCGAAGCCTTAACTGTTGACAACCCAGAAACTGCTATTGTGTCTCATGATCATCCTCATCCTCAACCCGGCGATACCTCTGATCTTAATTATTTGCAAGAGCAAGTAGGAGGAATGCTTAAGATTACTCCCTCTGATGTTGAAAATGATGAGTCGGACTACTGGCTTCTCTCAAATGCTGAGATTAGCATGACGGATATTTGGAAAACTGACTCTGGTATCGATTGGGATTATGGAATAGCCGACGTGAGTACTCCACCACCAGGAATGGGCGAAATAGCACCAACAGCTGTTGACTCAACCCCGAGATGA

Protein Analysis

483

Amino Acids

52.6

Weight (kDa)

5.14

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_E2F_TDP PF02319 220 - 278 9.3e-23 E2F/DP family winged-helix DNA-binding domain
E2F_CC-MB PF16421 298 - 378 4.8e-23 E2F transcription factor CC-MB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1029
AciI CCGC 6 cut(s) 41, 47, 50, 53, 56, 965
AclI AACGTT 1 cut(s) 636
AclWI GGATC 3 cut(s) 947, 1001, 1129
AcsI RAATTY 2 cut(s) 1043, 1055
AcuI CTGAAG 1 cut(s) 885
AfaI GTAC 3 cut(s) 15, 1009, 1393
AfiI CCNNNNNNNGG 4 cut(s) 386, 1208, 1403, 1409
AflII CTTAAG 1 cut(s) 1259
AgsI TTSAA 5 cut(s) 662, 673, 755, 1049, 1283
AjiI CACGTC 1 cut(s) 1387
AjnI CCWGG 3 cut(s) 709, 886, 1402
AluBI AGCT 6 cut(s) 128, 216, 587, 923, 1116, 1430
AluI AGCT 6 cut(s) 128, 216, 587, 923, 1116, 1430
Alw26I GTCTC 3 cut(s) 524, 813, 1188
AlwI GGATC 3 cut(s) 947, 1001, 1129
AlwNI CAGNNNCTG 3 cut(s) 369, 907, 1172
Ama87I CYCGRG 1 cut(s) 1444
AoxI GGCC 1 cut(s) 414
ApeKI GCWGC 2 cut(s) 587, 1082
ApoI RAATTY 2 cut(s) 1043, 1055
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
AspS9I GGNCC 2 cut(s) 574, 1016
AsuC2I CCSGG 2 cut(s) 27, 1209
AsuII TTCGAA 1 cut(s) 1059
AvaI CYCGRG 1 cut(s) 1444
AvaII GGWCC 2 cut(s) 574, 1016
BaeI ACNNNNGTAYC 2 cut(s) 1342, 1375
BauI CACGAG 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 1068
BbvI GCAGC 2 cut(s) 574, 1094
BccI CCATC 6 cut(s) 69, 180, 325, 455, 493, 557
BceAI ACGGC 1 cut(s) 899
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BciT130I CCWGG 3 cut(s) 711, 888, 1404
BclI TGATCA 1 cut(s) 1189
BcnI CCSGG 2 cut(s) 27, 1209
BcoDI GTCTC 3 cut(s) 524, 813, 1188
BfaI CTAG 3 cut(s) 360, 381, 1113
BfmI CTRYAG 2 cut(s) 588, 1125
BfrI CTTAAG 1 cut(s) 1259
BglII AGATCT 2 cut(s) 269, 652
BisI GCNGC 7 cut(s) 41, 50, 53, 56, 588, 966, 1083
BlsI GCNGC 7 cut(s) 42, 51, 54, 57, 589, 967, 1084
BmcAI AGTACT 1 cut(s) 1393
Bme1390I CCNGG 5 cut(s) 27, 711, 888, 1209, 1404
Bme18I GGWCC 2 cut(s) 574, 1016
BmeT110I CYCGRG 1 cut(s) 1444
BmgBI CACGTC 1 cut(s) 1387
BmgT120I GGNCC 2 cut(s) 574, 1016
BmiI GGNNCC 2 cut(s) 81, 1017
BmrFI CCNGG 5 cut(s) 27, 711, 888, 1209, 1404
BmsI GCATC 3 cut(s) 244, 691, 712
BpiI GAAGAC 1 cut(s) 1068
Bpu10I CCTNAGC 2 cut(s) 824, 1117
Bpu14I TTCGAA 1 cut(s) 1059
BpuMI CCSGG 2 cut(s) 27, 1209
Bsa29I ATCGAT 2 cut(s) 175, 1362
BsaBI GATNNNNATC 1 cut(s) 171
BsaI GGTCTC 2 cut(s) 524, 813
BsaWI WCCGGW 3 cut(s) 5, 76, 82
BsaXI ACNNNNNCTCC 4 cut(s) 130, 160, 466, 496
Bsc4I CCNNNNNNNGG 4 cut(s) 386, 1208, 1403, 1409
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 1307
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 3 cut(s) 711, 888, 1404
BseCI ATCGAT 2 cut(s) 175, 1362
BseGI GGATG 5 cut(s) 61, 154, 727, 1192, 1198
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 4 cut(s) 386, 1208, 1403, 1409
BseMII CTCAG 5 cut(s) 50, 208, 815, 1131, 1311
BseNI ACTGG 1 cut(s) 1307
BseRI GAGGAG 2 cut(s) 426, 915
BseXI GCAGC 2 cut(s) 574, 1094
BsgI GTGCAG 2 cut(s) 626, 1101
BshFI GGCC 1 cut(s) 416
BshVI ATCGAT 2 cut(s) 175, 1362
BsiHKCI CYCGRG 1 cut(s) 1444
BsiSI CCGG 6 cut(s) 6, 27, 77, 83, 98, 1209
BsiWI CGTACG 1 cut(s) 13
BslFI GGGAC 2 cut(s) 351, 1029
BslI CCNNNNNNNGG 4 cut(s) 386, 1208, 1403, 1409
BsmAI GTCTC 3 cut(s) 524, 813, 1188
BsmFI GGGAC 2 cut(s) 351, 1029
BsmI GAATGC 2 cut(s) 573, 1260
BsnI GGCC 1 cut(s) 416
Bso31I GGTCTC 2 cut(s) 524, 813
BsoBI CYCGRG 1 cut(s) 1444
Bsp119I TTCGAA 1 cut(s) 1059
Bsp143I GATC 9 cut(s) 17, 241, 269, 652, 952, 993, 1121, 1189, 1222
BspACI CCGC 6 cut(s) 41, 47, 50, 53, 56, 965
BspANI GGCC 1 cut(s) 416
BspCNI CTCAG 5 cut(s) 49, 207, 816, 1130, 1312
BspDI ATCGAT 2 cut(s) 175, 1362
BspHI TCATGA 1 cut(s) 1186
BspLI GGNNCC 2 cut(s) 81, 1017
BspMAI CTGCAG 1 cut(s) 592
BspPI GGATC 3 cut(s) 947, 1001, 1129
BspQI GCTCTTC 1 cut(s) 765
BspT104I TTCGAA 1 cut(s) 1059
BspTI CTTAAG 1 cut(s) 1259
BspTNI GGTCTC 2 cut(s) 524, 813
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 1 cut(s) 1307
BssAI RCCGGY 1 cut(s) 97
BssMI GATC 9 cut(s) 17, 241, 269, 652, 952, 993, 1121, 1189, 1222
BssNAI GTATAC 1 cut(s) 1030
BssSI CACGAG 1 cut(s) 334
Bst1107I GTATAC 1 cut(s) 1030
Bst2BI CACGAG 1 cut(s) 334
Bst2UI CCWGG 3 cut(s) 711, 888, 1404
Bst4CI ACNGT 3 cut(s) 69, 509, 1156
Bst6I CTCTTC 2 cut(s) 765, 861
BstAFI CTTAAG 1 cut(s) 1259
BstBI TTCGAA 1 cut(s) 1059
BstC8I GCNNGC 3 cut(s) 777, 1096, 1100
BstDEI CTNAG 7 cut(s) 36, 124, 194, 824, 1001, 1117, 1320
BstENI CCTNNNNNAGG 1 cut(s) 384
BstF5I GGATG 5 cut(s) 61, 154, 727, 1192, 1198
BstKTI GATC 9 cut(s) 20, 244, 272, 655, 955, 996, 1124, 1192, 1225
BstMAI GTCTC 3 cut(s) 524, 813, 1188
BstMBI GATC 9 cut(s) 17, 241, 269, 652, 952, 993, 1121, 1189, 1222
BstMWI GCNNNNNNNGC 6 cut(s) 46, 49, 55, 920, 1091, 1427
BstNI CCWGG 3 cut(s) 711, 888, 1404
BstNSI RCATGY 1 cut(s) 1098
BstSCI CCNGG 5 cut(s) 25, 709, 886, 1207, 1402
BstSFI CTRYAG 2 cut(s) 588, 1125
BstV1I GCAGC 2 cut(s) 574, 1094
BstV2I GAAGAC 1 cut(s) 1068
BstX2I RGATCY 3 cut(s) 269, 652, 1121
BstYI RGATCY 3 cut(s) 269, 652, 1121
BstZ17I GTATAC 1 cut(s) 1030
Bsu15I ATCGAT 2 cut(s) 175, 1362
BsuRI GGCC 1 cut(s) 416
BsuTUI ATCGAT 2 cut(s) 175, 1362
BtgZI GCGATG 1 cut(s) 729
BtrI CACGTC 1 cut(s) 1387
BtsCI GGATG 5 cut(s) 61, 154, 727, 1192, 1198
Cac8I GCNNGC 3 cut(s) 777, 1096, 1100
CaiI CAGNNNCTG 3 cut(s) 369, 907, 1172
CciI TCATGA 1 cut(s) 1186
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 574, 1016
ClaI ATCGAT 2 cut(s) 175, 1362
CsiI ACCWGGT 1 cut(s) 886
Csp6I GTAC 3 cut(s) 14, 1008, 1392
CviAII CATG 6 cut(s) 224, 929, 1095, 1136, 1187, 1330
CviQI GTAC 3 cut(s) 14, 1008, 1392
DdeI CTNAG 7 cut(s) 36, 124, 194, 824, 1001, 1117, 1320
DpnI GATC 9 cut(s) 19, 243, 271, 654, 954, 995, 1123, 1191, 1224
DpnII GATC 9 cut(s) 17, 241, 269, 652, 952, 993, 1121, 1189, 1222
Eam1104I CTCTTC 2 cut(s) 765, 861
EarI CTCTTC 2 cut(s) 765, 861
Eco31I GGTCTC 2 cut(s) 524, 813
Eco32I GATATC 1 cut(s) 874
Eco47I GGWCC 2 cut(s) 574, 1016
Eco57I CTGAAG 1 cut(s) 885
Eco88I CYCGRG 1 cut(s) 1444
EcoNI CCTNNNNNAGG 1 cut(s) 384
EcoO109I RGGNCCY 1 cut(s) 1016
EcoRII CCWGG 3 cut(s) 709, 886, 1402
EcoRV GATATC 1 cut(s) 874
FaeI CATG 6 cut(s) 227, 932, 1098, 1139, 1190, 1333
FaqI GGGAC 2 cut(s) 351, 1029
FatI CATG 6 cut(s) 223, 928, 1094, 1135, 1186, 1329
FbaI TGATCA 1 cut(s) 1189
FblI GTMKAC 1 cut(s) 1029
Fnu4HI GCNGC 7 cut(s) 41, 50, 53, 56, 588, 966, 1083
FokI GGATG 5 cut(s) 48, 141, 734, 1179, 1185
Fsp4HI GCNGC 7 cut(s) 41, 50, 53, 56, 588, 966, 1083
FspBI CTAG 3 cut(s) 360, 381, 1113
GluI GCNGC 7 cut(s) 41, 50, 53, 56, 588, 966, 1083
HaeIII GGCC 1 cut(s) 416
HapII CCGG 6 cut(s) 6, 27, 77, 83, 98, 1209
Hin1II CATG 6 cut(s) 227, 932, 1098, 1139, 1190, 1333
HincII GTYRAC 4 cut(s) 400, 432, 1159, 1435
HindII GTYRAC 4 cut(s) 400, 432, 1159, 1435
HinfI GANTC 8 cut(s) 330, 396, 676, 841, 904, 1292, 1352, 1436
HpaII CCGG 6 cut(s) 6, 27, 77, 83, 98, 1209
Hpy166II GTNNAC 6 cut(s) 400, 432, 884, 1030, 1159, 1435
Hpy188I TCNGA 7 cut(s) 163, 797, 846, 909, 1222, 1276, 1297
Hpy8I GTNNAC 6 cut(s) 400, 432, 884, 1030, 1159, 1435
Hpy99I CGWCG 3 cut(s) 120, 618, 1388
HpyAV CCTTC 5 cut(s) 168, 195, 285, 685, 1043
HpyCH4III ACNGT 3 cut(s) 69, 509, 1156
HpyCH4IV ACGT 6 cut(s) 115, 616, 636, 729, 1026, 1386
HpyCH4V TGCA 4 cut(s) 590, 607, 1082, 1237
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 49, 55, 920, 1091, 1427
HpyF3I CTNAG 7 cut(s) 36, 124, 194, 824, 1001, 1117, 1320
HpySE526I ACGT 6 cut(s) 115, 616, 636, 729, 1026, 1386
Hsp92II CATG 6 cut(s) 227, 932, 1098, 1139, 1190, 1333
Ksp22I TGATCA 1 cut(s) 1189
Kzo9I GATC 9 cut(s) 17, 241, 269, 652, 952, 993, 1121, 1189, 1222
LguI GCTCTTC 1 cut(s) 765
LmnI GCTCC 3 cut(s) 213, 319, 928
Lsp1109I GCAGC 2 cut(s) 574, 1094
LweI GCATC 3 cut(s) 244, 691, 712
MabI ACCWGGT 1 cut(s) 886
MaeI CTAG 3 cut(s) 360, 381, 1113
MaeII ACGT 6 cut(s) 115, 616, 636, 729, 1026, 1386
MaeIII GTNAC 3 cut(s) 85, 119, 859
MalI GATC 9 cut(s) 19, 243, 271, 654, 954, 995, 1123, 1191, 1224
MboI GATC 9 cut(s) 17, 241, 269, 652, 952, 993, 1121, 1189, 1222
MboII GAAGA 7 cut(s) 12, 24, 180, 263, 782, 878, 1073
MflI RGATCY 3 cut(s) 269, 652, 1121
MluCI AATT 5 cut(s) 546, 750, 1043, 1055, 1228
MlyI GAGTC 5 cut(s) 405, 898, 1301, 1346, 1430
MmeI TCCRAC 1 cut(s) 1275
MseI TTAA 6 cut(s) 180, 549, 815, 1151, 1227, 1260
MslI CAYNNNNRTG 2 cut(s) 228, 1093
MspA1I CMGCKG 1 cut(s) 1430
MspCI CTTAAG 1 cut(s) 1259
MspI CCGG 6 cut(s) 6, 27, 77, 83, 98, 1209
MspR9I CCNGG 5 cut(s) 27, 711, 888, 1209, 1404
Mva1269I GAATGC 2 cut(s) 573, 1260
MvaI CCWGG 3 cut(s) 711, 888, 1404
MwoI GCNNNNNNNGC 6 cut(s) 46, 49, 55, 920, 1091, 1427
NciI CCSGG 2 cut(s) 27, 1209
NdeII GATC 9 cut(s) 17, 241, 269, 652, 952, 993, 1121, 1189, 1222
NlaIII CATG 6 cut(s) 227, 932, 1098, 1139, 1190, 1333
NlaIV GGNNCC 2 cut(s) 81, 1017
NmuCI GTSAC 1 cut(s) 119
NspI RCATGY 1 cut(s) 1098
NspV TTCGAA 1 cut(s) 1059
PaeI GCATGC 1 cut(s) 1098
PagI TCATGA 1 cut(s) 1186
PciSI GCTCTTC 1 cut(s) 765
PcsI WCGNNNNNNNCGW 1 cut(s) 1032
PctI GAATGC 2 cut(s) 573, 1260
PfeI GAWTC 3 cut(s) 330, 676, 841
Pfl23II CGTACG 1 cut(s) 13
PkrI GCNGC 7 cut(s) 42, 51, 54, 57, 589, 967, 1084
PleI GAGTC 5 cut(s) 404, 898, 1300, 1346, 1430
PpsI GAGTC 5 cut(s) 404, 898, 1300, 1346, 1430
PpuMI RGGWCCY 1 cut(s) 1016
Psp1406I AACGTT 1 cut(s) 636
Psp5II RGGWCCY 1 cut(s) 1016
Psp6I CCWGG 3 cut(s) 709, 886, 1402
PspGI CCWGG 3 cut(s) 709, 886, 1402
PspLI CGTACG 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 81, 1017
PspPI GGNCC 2 cut(s) 574, 1016
PspPPI RGGWCCY 1 cut(s) 1016
PstI CTGCAG 1 cut(s) 592
PstNI CAGNNNCTG 3 cut(s) 369, 907, 1172
PsuI RGATCY 3 cut(s) 269, 652, 1121
PvuII CAGCTG 1 cut(s) 1430
RsaI GTAC 3 cut(s) 15, 1009, 1393
RsaNI GTAC 3 cut(s) 14, 1008, 1392
RseI CAYNNNNRTG 2 cut(s) 228, 1093
SapI GCTCTTC 1 cut(s) 765
SaqAI TTAA 6 cut(s) 180, 549, 815, 1151, 1227, 1260
SatI GCNGC 7 cut(s) 41, 50, 53, 56, 588, 966, 1083
Sau3AI GATC 9 cut(s) 17, 241, 269, 652, 952, 993, 1121, 1189, 1222
Sau96I GGNCC 2 cut(s) 574, 1016
ScaI AGTACT 1 cut(s) 1393
SchI GAGTC 5 cut(s) 405, 898, 1301, 1346, 1430
ScrFI CCNGG 5 cut(s) 27, 711, 888, 1209, 1404
SexAI ACCWGGT 1 cut(s) 886
SfaNI GCATC 3 cut(s) 244, 691, 712
SfcI CTRYAG 2 cut(s) 588, 1125
SfuI TTCGAA 1 cut(s) 1059
SinI GGWCC 2 cut(s) 574, 1016
SmiMI CAYNNNNRTG 2 cut(s) 228, 1093
SmlI CTYRAG 1 cut(s) 1259
SmoI CTYRAG 1 cut(s) 1259
SphI GCATGC 1 cut(s) 1098
Sse9I AATT 5 cut(s) 546, 750, 1043, 1055, 1228
SsiI CCGC 6 cut(s) 41, 47, 50, 53, 56, 965
SspMI CTAG 3 cut(s) 360, 381, 1113
StyD4I CCNGG 5 cut(s) 25, 709, 886, 1207, 1402
TaaI ACNGT 3 cut(s) 69, 509, 1156
TaiI ACGT 6 cut(s) 118, 619, 639, 732, 1029, 1389
TaqI TCGA 7 cut(s) 175, 452, 679, 768, 1059, 1143, 1362
TasI AATT 5 cut(s) 546, 750, 1043, 1055, 1228
TatI WGTACW 2 cut(s) 1007, 1391
TauI GCSGC 5 cut(s) 43, 52, 55, 58, 968
TfiI GAWTC 3 cut(s) 330, 676, 841
Tru1I TTAA 6 cut(s) 180, 549, 815, 1151, 1227, 1260
Tru9I TTAA 6 cut(s) 180, 549, 815, 1151, 1227, 1260
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 2 cut(s) 587, 1082
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 4 cut(s) 143, 212, 849, 975
TspGWI ACGGA 2 cut(s) 138, 1349
Vha464I CTTAAG 1 cut(s) 1259
VpaK11BI GGWCC 2 cut(s) 574, 1016
XagI CCTNNNNNAGG 1 cut(s) 384
XapI RAATTY 2 cut(s) 1043, 1055
XceI RCATGY 1 cut(s) 1098
XmiI GTMKAC 1 cut(s) 1029
XspI CTAG 3 cut(s) 360, 381, 1113
ZrmI AGTACT 1 cut(s) 1393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.