Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006005

Physical Location & Seq

Genomic Coordinates Reverse (-)

12211975 .. 12215722

Gene Structure 3748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0148700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGAAACAGCTACACAAGCAATCGAGCGTGAATCACAGGAGGGACGAAGAGATCCCAACCTCCCTATCCTCCTCCACCTACTCCCCCAAAGCCTTCAAGCACCCCAGATCTCTCCCCAGATCCATCAACTACATCTTCAGAGAGCAACGCCTCCTCTTCGTTGTCGTCGGCATTCTCATCGGCTCCACCTTCTTCATCCTCCAGCCCACTCTCTCCCGCCTCTCCCCTTCCGAGCCCAATCCCTCCATCCCCCGATCCTTCTCCTTCTCCTCCTCCTCCGTCCACGACCGTATCAACACCGCCTCCTTCGCCACCGACCTCCGCAGCAACGCCGGCAGGGTCCCCGCCGGCCTCGGCAAGCGCAGGCTCAGGATCGTCGTCACCGGTGGCGCCGGCTTCGTCGGCTCCCACCTCGTCGATAAGTTGCTCTCCAGAGGGAACGATGTCATTGTCATTGACAATTTCTTCACCGGGAGGAAGGAGAATGTGGCGCACCATTTCGGGAATCCCAGGTTCGAGCTCATTCGCCACGACGTCGTTGAGCCGATTCTGCTGGAGGTCGATCAGATCTACCACCTGGCCTGCCCGGCCTCGCCTGTTCACTATAAGTACAATCCGGTCAAGACAATCAAGACCAATGTGATGGGGACCCTTAATATGCTTGGCCTTGCGAAGCGAATTGGGGCTAGGTTTTTGATCACTAGTACCAGTGAGGTCTATGGTGATCCACTGGAGCATCCTCAGAAGGAGACTTACTGGGGAAATGTCAATCCTATAGGTGAGAGGAGCTGTTATGACGAAGGAAAGAGGACGGCAGAGACACTGGCAATGGATTATCATCGAGGTGCAGGTGTTGAGGTTCGTATTGCTCGAATTTTCAATACATATGGGCCACGTATGTGTTTGGATGATGGGCGTGTTGTCAGCAATTTTGTTGCTCAGGCTATCCGCAAACAACCATTGACTGTGTACGGTGATGGTAAACAAACACGAAGCTTCCAATATGTCTCTGATTTGGTAAATGGACTGGTGGCATTGATGGAAGGCGAACATGTGGGGCCTTTCAACCTGGGAAATCCCGGGGAATTCACCATGCTAGAGCTTGCTGAGGTTGTGAAAGAAACAATTGATTCAAGTGCAACAATAGAATTCAGGCCAAATACTGCTGATGATCCTCATAAGAGGAAACCTGATATTGGCAAAGCAAAAGAGCTGTTGAACTGGGAGCCAAAAGTATCACTGAGGGAGGGACTGCCTCTAATGGTGAGTGATTTCCAGAATCGCATTTTAAATGAGGATGAAGGAAAAGGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0045787 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051446 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko01522 ko03018 ko04110 ko04218 ko04934 ko05161 ko05166 ko05167 ko05200 ko05206 ko05212 ko05214 ko05215 ko05218 ko05219 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map01522 map03018 map04110 map04218 map04934 map05161 map05166 map05167 map05200 map05206 map05212 map05214 map05215 map05218 map05219 map05220 map05222 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

E2F_CC-MB E2F_TDP

Protein Analysis

438

Amino Acids

48.95

Weight (kDa)

9.15

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	124 - 387	2.7e-10	RmlD substrate binding domain
Epimerase	PF01370	125 - 358	1.1e-48	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	125 - 234	1e-05	Polysaccharide biosynthesis protein
3Beta_HSD	PF01073	126 - 339	6.1e-14	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	127 - 419	1e-56	GDP-mannose 4,6 dehydratase
NAD_binding_4	PF07993	180 - 292	1.6e-06	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36010 AT2G36010 AT2G36010
fragaria_vesca	FvH4_6g19970 FvH4_6g19970 FvH4_6g19970 FvH4_6g19970 FvH4_6g19970 FvH4_6g19970 FvH4_6g19970
malus_domestica	MD12G1037100.v1.1 MD14G1036100.v1.1
prunus_persica	Prupe.7G098100_v2.0.a1
pyrus_communis	pycom12g03210 pycom14g03180
rosa_chinensis	RchiOBHm_Chr3g0475421
rosa_laevigata	RLG00000023845
rosa_multiflora	Rmu_sc0016637.1_g000006 Rmu_sc0018174.1_g000003
rosa_roxburghii	Rroxscaffold_6G00406320
rosa_rugosa	Rorug03G0148700 Rorug03G0148700
rosa_samantha	Rh3AG198900 Rh3BG228700 Rh3CG223100 Rh3DG224100
rosa_wichuraiana	Rw3G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	839
AatII	GACGTC	1 cut(s)	537
Acc36I	ACCTGC	1 cut(s)	839
AccB1I	GGYRCC	1 cut(s)	389
AciI	CCGC	5 cut(s)	217, 300, 322, 345, 949
AclWI	GGATC	6 cut(s)	46, 114, 249, 380, 719, 1166
AcsI	RAATTY	3 cut(s)	873, 1085, 1148
AcuI	CTGAAG	1 cut(s)	121
AcyI	GRCGYC	2 cut(s)	390, 534
AfaI	GTAC	3 cut(s)	611, 706, 971
AfiI	CCNNNNNNNGG	1 cut(s)	1196
AflIII	ACRYGT	1 cut(s)	1051
AgeI	ACCGGT	1 cut(s)	383
AgsI	TTSAA	5 cut(s)	97, 880, 1066, 1134, 1219
AhlI	ACTAGT	1 cut(s)	701
AjnI	CCWGG	3 cut(s)	509, 576, 1068
AleI	CACNNNNGTG	1 cut(s)	898
AluBI	AGCT	6 cut(s)	10, 520, 789, 996, 1102, 1213
AluI	AGCT	6 cut(s)	10, 520, 789, 996, 1102, 1213
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	3 cut(s)	743, 812, 1012
AlwI	GGATC	6 cut(s)	46, 114, 249, 380, 719, 1166
Ama87I	CYCGRG	1 cut(s)	1079
AoxI	GGCC	7 cut(s)	349, 579, 588, 664, 890, 1058, 1154
ApeKI	GCWGC	1 cut(s)	324
ApoI	RAATTY	3 cut(s)	873, 1085, 1148
AsiGI	ACCGGT	1 cut(s)	383
AspLEI	GCGC	3 cut(s)	363, 392, 493
AspS9I	GGNCC	4 cut(s)	340, 648, 890, 1058
AsuC2I	CCSGG	4 cut(s)	472, 587, 1080, 1081
AsuHPI	GGTGA	7 cut(s)	373, 460, 734, 791, 986, 1081, 1276
AvaI	CYCGRG	1 cut(s)	1079
AvaII	GGWCC	2 cut(s)	340, 648
BaeI	ACNNNNGTAYC	2 cut(s)	274, 307
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	2 cut(s)	237, 522
BarI	GAAGNNNNNNTAC	2 cut(s)	737, 769
Bbv12I	GWGCWC	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	1107
BbvI	GCAGC	1 cut(s)	336
BccI	CCATC	6 cut(s)	131, 254, 637, 905, 971, 1033
BceAI	ACGGC	1 cut(s)	828
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	3 cut(s)	511, 578, 1070
BclI	TGATCA	1 cut(s)	696
BcnI	CCSGG	4 cut(s)	472, 587, 1080, 1081
BcoDI	GTCTC	3 cut(s)	743, 812, 1012
BcuI	ACTAGT	1 cut(s)	701
BfaI	CTAG	3 cut(s)	687, 702, 1097
BfmI	CTRYAG	1 cut(s)	774
BfoI	RGCGCY	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	839
BglI	GCCNNNNNGGC	1 cut(s)	587
BglII	AGATCT	2 cut(s)	107, 567
BisI	GCNGC	1 cut(s)	325
BlsI	GCNGC	1 cut(s)	326
Bme1390I	CCNGG	7 cut(s)	472, 511, 578, 587, 1070, 1080, 1081
Bme18I	GGWCC	2 cut(s)	340, 648
BmeT110I	CYCGRG	1 cut(s)	1079
BmgT120I	GGNCC	4 cut(s)	340, 648, 890, 1058
BmiI	GGNNCC	9 cut(s)	184, 341, 342, 391, 406, 649, 650, 1059, 1227
BmrFI	CCNGG	7 cut(s)	472, 511, 578, 587, 1070, 1080, 1081
BmrI	ACTGGG	2 cut(s)	766, 1231
BmsI	GCATC	1 cut(s)	745
BmuI	ACTGGG	2 cut(s)	766, 1231
BpmI	CTGGAG	4 cut(s)	185, 415, 575, 752
Bpu10I	CCTNAGC	3 cut(s)	368, 939, 1107
BpuMI	CCSGG	4 cut(s)	472, 587, 1080, 1081
BsaAI	YACGTR	1 cut(s)	896
BsaBI	GATNNNNATC	1 cut(s)	837
BsaHI	GRCGYC	2 cut(s)	390, 534
BsaJI	CCNNGG	5 cut(s)	352, 509, 1069, 1079, 1080
BsaWI	WCCGGW	2 cut(s)	383, 616
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	1196
Bse118I	RCCGGY	4 cut(s)	332, 347, 383, 392
Bse1I	ACTGG	6 cut(s)	708, 735, 761, 828, 1032, 1226
Bse3DI	GCAATG	1 cut(s)	834
Bse8I	GATNNNNATC	1 cut(s)	837
BseBI	CCWGG	3 cut(s)	511, 578, 1070
BseDI	CCNNGG	5 cut(s)	352, 509, 1069, 1079, 1080
BseGI	GGATG	5 cut(s)	195, 246, 736, 913, 1303
BseJI	GATNNNNATC	1 cut(s)	837
BseLI	CCNNNNNNNGG	1 cut(s)	1196
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	5 cut(s)	382, 755, 953, 1098, 1232
BseNI	ACTGG	6 cut(s)	708, 735, 761, 828, 1032, 1226
BseRI	GAGGAG	6 cut(s)	61, 143, 259, 262, 265, 799
BseXI	GCAGC	1 cut(s)	336
BsgI	GTGCAG	1 cut(s)	867
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	7 cut(s)	351, 581, 590, 666, 892, 1060, 1156
BshNI	GGYRCC	1 cut(s)	389
BshTI	ACCGGT	1 cut(s)	383
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	522
BsiHKCI	CYCGRG	1 cut(s)	1079
BsiSI	CCGG	8 cut(s)	333, 348, 384, 393, 471, 587, 617, 1080
BslFI	GGGAC	4 cut(s)	56, 326, 661, 1263
BslI	CCNNNNNNNGG	1 cut(s)	1196
BsmAI	GTCTC	3 cut(s)	743, 812, 1012
BsmFI	GGGAC	4 cut(s)	56, 326, 661, 1263
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	7 cut(s)	351, 581, 590, 666, 892, 1060, 1156
BsoBI	CYCGRG	1 cut(s)	1079
Bsp1286I	GDGCHC	2 cut(s)	237, 522
BspACI	CCGC	5 cut(s)	217, 300, 322, 345, 949
BspANI	GGCC	7 cut(s)	351, 581, 590, 666, 892, 1060, 1156
BspCNI	CTCAG	5 cut(s)	381, 754, 952, 1099, 1233
BspLI	GGNNCC	9 cut(s)	184, 341, 342, 391, 406, 649, 650, 1059, 1227
BspMI	ACCTGC	1 cut(s)	839
BspPI	GGATC	6 cut(s)	46, 114, 249, 380, 719, 1166
BspT107I	GGYRCC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	834
BsrFI	RCCGGY	4 cut(s)	332, 347, 383, 392
BsrI	ACTGG	6 cut(s)	708, 735, 761, 828, 1032, 1226
BssAI	RCCGGY	4 cut(s)	332, 347, 383, 392
BssECI	CCNNGG	5 cut(s)	352, 509, 1069, 1079, 1080
BssNI	GRCGYC	2 cut(s)	390, 534
Bst2UI	CCWGG	3 cut(s)	511, 578, 1070
Bst4CI	ACNGT	3 cut(s)	290, 967, 974
Bst6I	CTCTTC	2 cut(s)	42, 161
BstACI	GRCGYC	2 cut(s)	390, 534
BstBAI	YACGTR	1 cut(s)	896
BstC8I	GCNNGC	7 cut(s)	334, 349, 359, 365, 394, 583, 1104
BstDEI	CTNAG	5 cut(s)	368, 741, 939, 1107, 1241
BstF5I	GGATG	5 cut(s)	195, 246, 736, 913, 1303
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	3 cut(s)	363, 392, 493
BstMAI	GTCTC	3 cut(s)	743, 812, 1012
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 308, 333, 402, 550, 587
BstNI	CCWGG	3 cut(s)	511, 578, 1070
BstNSI	RCATGY	1 cut(s)	1055
BstSCI	CCNGG	7 cut(s)	470, 509, 576, 585, 1068, 1078, 1079
BstSFI	CTRYAG	1 cut(s)	774
BstV1I	GCAGC	1 cut(s)	336
BstX2I	RGATCY	4 cut(s)	51, 107, 119, 567
BstXI	CCANNNNNNTGG	1 cut(s)	643
BstYI	RGATCY	4 cut(s)	51, 107, 119, 567
BsuRI	GGCC	7 cut(s)	351, 581, 590, 666, 892, 1060, 1156
BtsCI	GGATG	5 cut(s)	195, 246, 736, 913, 1303
BtsIMutI	CAGTG	4 cut(s)	715, 728, 821, 1238
BveI	ACCTGC	1 cut(s)	839
Cac8I	GCNNGC	7 cut(s)	334, 349, 359, 365, 394, 583, 1104
CfoI	GCGC	3 cut(s)	363, 392, 493
Cfr10I	RCCGGY	4 cut(s)	332, 347, 383, 392
Cfr13I	GGNCC	4 cut(s)	340, 648, 890, 1058
Cfr9I	CCCGGG	1 cut(s)	1079
Csp6I	GTAC	3 cut(s)	610, 705, 970
CspAI	ACCGGT	1 cut(s)	383
CviAII	CATG	2 cut(s)	1052, 1093
CviQI	GTAC	3 cut(s)	610, 705, 970
DdeI	CTNAG	5 cut(s)	368, 741, 939, 1107, 1241
DinI	GGCGCC	1 cut(s)	391
DraI	TTTAAA	1 cut(s)	1290
Eam1104I	CTCTTC	2 cut(s)	42, 161
EarI	CTCTTC	2 cut(s)	42, 161
Ecl136II	GAGCTC	1 cut(s)	520
Eco24I	GRGCYC	2 cut(s)	237, 522
Eco47I	GGWCC	2 cut(s)	340, 648
Eco53kI	GAGCTC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	121
Eco88I	CYCGRG	1 cut(s)	1079
EcoICRI	GAGCTC	1 cut(s)	520
EcoO109I	RGGNCCY	3 cut(s)	340, 648, 1058
EcoRI	GAATTC	2 cut(s)	1085, 1148
EcoRII	CCWGG	3 cut(s)	509, 576, 1068
EcoT38I	GRGCYC	2 cut(s)	237, 522
EgeI	GGCGCC	1 cut(s)	391
EheI	GGCGCC	1 cut(s)	391
FaeI	CATG	2 cut(s)	1055, 1096
FaqI	GGGAC	4 cut(s)	56, 326, 661, 1263
FatI	CATG	2 cut(s)	1051, 1092
FauI	CCCGC	2 cut(s)	224, 352
FauNDI	CATATG	1 cut(s)	886
FbaI	TGATCA	1 cut(s)	696
Fnu4HI	GCNGC	1 cut(s)	325
FokI	GGATG	5 cut(s)	182, 233, 723, 920, 1310
FriOI	GRGCYC	2 cut(s)	237, 522
Fsp4HI	GCNGC	1 cut(s)	325
FspBI	CTAG	3 cut(s)	687, 702, 1097
GlaI	GCGC	3 cut(s)	362, 391, 492
GluI	GCNGC	1 cut(s)	325
GsuI	CTGGAG	4 cut(s)	185, 415, 575, 752
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	7 cut(s)	351, 581, 590, 666, 892, 1060, 1156
HapII	CCGG	8 cut(s)	333, 348, 384, 393, 471, 587, 617, 1080
HhaI	GCGC	3 cut(s)	363, 392, 493
Hin1I	GRCGYC	2 cut(s)	390, 534
Hin1II	CATG	2 cut(s)	1055, 1096
Hin6I	GCGC	3 cut(s)	361, 390, 491
HinP1I	GCGC	3 cut(s)	361, 390, 491
HindIII	AAGCTT	1 cut(s)	994
HinfI	GANTC	5 cut(s)	31, 505, 547, 1130, 1279
HpaII	CCGG	8 cut(s)	333, 348, 384, 393, 471, 587, 617, 1080
HphI	GGTGA	7 cut(s)	373, 460, 734, 791, 986, 1081, 1276
Hpy166II	GTNNAC	4 cut(s)	283, 601, 970, 983
Hpy188I	TCNGA	5 cut(s)	140, 232, 567, 744, 1012
Hpy188III	TCNNGA	6 cut(s)	370, 432, 502, 622, 631, 1276
Hpy8I	GTNNAC	4 cut(s)	283, 601, 970, 983
Hpy99I	CGWCG	6 cut(s)	170, 380, 404, 419, 536, 539
HpyCH4III	ACNGT	3 cut(s)	290, 967, 974
HpyCH4IV	ACGT	2 cut(s)	534, 895
HpyCH4V	TGCA	2 cut(s)	848, 1139
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 308, 333, 402, 550, 587
HpyF3I	CTNAG	5 cut(s)	368, 741, 939, 1107, 1241
HpySE526I	ACGT	2 cut(s)	534, 895
Hsp92I	GRCGYC	2 cut(s)	390, 534
Hsp92II	CATG	2 cut(s)	1055, 1096
HspAI	GCGC	3 cut(s)	361, 390, 491
KasI	GGCGCC	1 cut(s)	389
KflI	GGGWCCC	2 cut(s)	340, 648
KroI	GCCGGC	3 cut(s)	332, 347, 392
KroNI	GCCGGC	3 cut(s)	334, 349, 394
Ksp22I	TGATCA	1 cut(s)	696
LmnI	GCTCC	5 cut(s)	188, 410, 733, 786, 1225
Lsp1109I	GCAGC	1 cut(s)	336
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	3 cut(s)	687, 702, 1097
MaeII	ACGT	2 cut(s)	534, 895
MaeIII	GTNAC	1 cut(s)	379
MboII	GAAGA	5 cut(s)	59, 127, 148, 184, 457
MfeI	CAATTG	1 cut(s)	1125
MflI	RGATCY	4 cut(s)	51, 107, 119, 567
MhlI	GDGCHC	2 cut(s)	237, 522
MluCI	AATT	8 cut(s)	460, 678, 873, 928, 1085, 1125, 1148, 1312
Mly113I	GGCGCC	1 cut(s)	390
MroNI	GCCGGC	3 cut(s)	332, 347, 392
MseI	TTAA	3 cut(s)	654, 1289, 1315
MslI	CAYNNNNRTG	2 cut(s)	843, 898
MspI	CCGG	8 cut(s)	333, 348, 384, 393, 471, 587, 617, 1080
MspR9I	CCNGG	7 cut(s)	472, 511, 578, 587, 1070, 1080, 1081
MunI	CAATTG	1 cut(s)	1125
Mva1269I	GAATGC	1 cut(s)	171
MvaI	CCWGG	3 cut(s)	511, 578, 1070
MwoI	GCNNNNNNNGC	6 cut(s)	16, 308, 333, 402, 550, 587
NaeI	GCCGGC	3 cut(s)	334, 349, 394
NarI	GGCGCC	1 cut(s)	390
NciI	CCSGG	4 cut(s)	472, 587, 1080, 1081
NdeI	CATATG	1 cut(s)	886
NgoMIV	GCCGGC	3 cut(s)	332, 347, 392
NlaIII	CATG	2 cut(s)	1055, 1096
NlaIV	GGNNCC	9 cut(s)	184, 341, 342, 391, 406, 649, 650, 1059, 1227
NmeAIII	GCCGAG	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	379
NspI	RCATGY	1 cut(s)	1055
OliI	CACNNNNGTG	1 cut(s)	898
PaqCI	CACCTGC	1 cut(s)	839
PciI	ACATGT	1 cut(s)	1051
PcsI	WCGNNNNNNNCGW	1 cut(s)	868
PctI	GAATGC	1 cut(s)	171
PdiI	GCCGGC	3 cut(s)	334, 349, 394
PfeI	GAWTC	5 cut(s)	31, 505, 547, 1130, 1279
PinAI	ACCGGT	1 cut(s)	383
PkrI	GCNGC	1 cut(s)	326
PluTI	GGCGCC	1 cut(s)	393
Ppu21I	YACGTR	1 cut(s)	896
PpuMI	RGGWCCY	2 cut(s)	340, 648
PscI	ACATGT	1 cut(s)	1051
Psp124BI	GAGCTC	1 cut(s)	522
Psp5II	RGGWCCY	2 cut(s)	340, 648
Psp6I	CCWGG	3 cut(s)	509, 576, 1068
PspGI	CCWGG	3 cut(s)	509, 576, 1068
PspN4I	GGNNCC	9 cut(s)	184, 341, 342, 391, 406, 649, 650, 1059, 1227
PspPI	GGNCC	4 cut(s)	340, 648, 890, 1058
PspPPI	RGGWCCY	2 cut(s)	340, 648
PsuI	RGATCY	4 cut(s)	51, 107, 119, 567
RsaI	GTAC	3 cut(s)	611, 706, 971
RsaNI	GTAC	3 cut(s)	610, 705, 970
RseI	CAYNNNNRTG	2 cut(s)	843, 898
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	3 cut(s)	654, 1289, 1315
SatI	GCNGC	1 cut(s)	325
Sau96I	GGNCC	4 cut(s)	340, 648, 890, 1058
ScrFI	CCNGG	7 cut(s)	472, 511, 578, 587, 1070, 1080, 1081
SduI	GDGCHC	2 cut(s)	237, 522
SfaNI	GCATC	1 cut(s)	745
SfcI	CTRYAG	1 cut(s)	774
SfiI	GGCCNNNNNGGCC	1 cut(s)	587
SfoI	GGCGCC	1 cut(s)	391
SgrAI	CRCCGGYG	1 cut(s)	383
SinI	GGWCC	2 cut(s)	340, 648
SmaI	CCCGGG	1 cut(s)	1081
SmiMI	CAYNNNNRTG	2 cut(s)	843, 898
SpeI	ACTAGT	1 cut(s)	701
Sse9I	AATT	8 cut(s)	460, 678, 873, 928, 1085, 1125, 1148, 1312
SsiI	CCGC	5 cut(s)	217, 300, 322, 345, 949
SspDI	GGCGCC	1 cut(s)	389
SspMI	CTAG	3 cut(s)	687, 702, 1097
SstI	GAGCTC	1 cut(s)	522
StyD4I	CCNGG	7 cut(s)	470, 509, 576, 585, 1068, 1078, 1079
TaaI	ACNGT	3 cut(s)	290, 967, 974
TaiI	ACGT	2 cut(s)	537, 898
TaqI	TCGA	6 cut(s)	23, 417, 516, 561, 841, 871
TasI	AATT	8 cut(s)	460, 678, 873, 928, 1085, 1125, 1148, 1312
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	5 cut(s)	31, 505, 547, 1130, 1279
Tru1I	TTAA	3 cut(s)	654, 1289, 1315
Tru9I	TTAA	3 cut(s)	654, 1289, 1315
TscAI	CASTG	4 cut(s)	715, 735, 828, 1245
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	1 cut(s)	324
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	3 cut(s)	17, 184, 1314
TspGWI	ACGGA	1 cut(s)	268
TspMI	CCCGGG	1 cut(s)	1079
TspRI	CASTG	4 cut(s)	715, 735, 828, 1245
VpaK11BI	GGWCC	2 cut(s)	340, 648
XapI	RAATTY	3 cut(s)	873, 1085, 1148
XceI	RCATGY	1 cut(s)	1055
XmaI	CCCGGG	1 cut(s)	1079
XspI	CTAG	3 cut(s)	687, 702, 1097
ZraI	GACGTC	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.