AT2G36870

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011840
Physical Location & Seq
Reverse (-)
15472607 .. 15474828
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36870.2

Sequence Viewer

Length: 900 bp
ATGGGTAACTCTTTGATCTCTCTTCTCTCAATCTTCCACTTGCTGGTGTTATGGGGATCCTCAGTGAATGCCTATTGGCCACCATCACCTGGTTATTGGCCAAGCTCCAAGGTTGGTTCCCTCAACTTCTACAAAGGTTTTAGGAATCTTTGGGGTCCTCAGCATCAGAGAATGGACCAAAATGCCCTCACCATCTGGCTTGATAGAACCTCAGGAAGTGGATTCAAGTCAGTGAAGCCATTCAGATCAGGCTACTTTGGAGCAAACATCAAACTCCAACCTGGCTACACTGCTGGAGTCATCACATCTCTCTATCTATCAAATAATGAGGCACATCCAGGGTTCCATGATGAGGTAGACATAGAATTTTTGGGGACAACATTTGGGAAGCCTTACACACTTCAGACAAATGTGTATATTAGAGGAAGTGGTGATGGGAAAATCATTGGCCGTGAGATGAAGTTTCGCTTGTGGTTTGATCCAACTAAAGATTTTCACCATTATGCTATTCTTTGGAGCCCTAGAGAAATCATATTTTTGGTGGATGATATTCCCATAAGAAGATACCCAAAGAAGAGTGCGTCTACATTTCCTTTAAGACCAATGTGGCTTTATGGTTCCATATGGGATGCTTCTTCTTGGGCAACGGAAGACGGTAAATACAAAGCCGACTATAAATATCAACCTTTCACTGCTAAATACACCAATTTTAAAGCGCTCGGCTGCACCGCCTACTCGTCAGCTCGGTGCTATCCGTTGTCGGCTTCGCCATACCGTTCTGGCGGATTAACCCGACAACAACACCAAGCCATGAGATGGGTTCAAACACATAGTATGGTATACAATTATTGCAAAGATTATAAGCGAGACCATTCTTTAACGCCGGAATGTTGGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044248 GO:0044260 GO:0071554 GO:0071704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

299

Amino Acids

34.48

Weight (kDa)

9.53

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 44 - 177 8.4e-36 Glycosyl hydrolases family 16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011840)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36870
fragaria_vesca FvH4_6g16550 FvH4_6g16550 FvH4_6g16550 FvH4_6g16550 FvH4_6g16550
malus_domestica MD04G1091200.v1.1 MD12G1109400.v1.1
prunus_persica Prupe.7G128000_v2.0.a1
pyrus_communis pycom04g08620
rosa_chinensis RchiOBHm_Chr3g0470461
rosa_laevigata RLG00000024264
rosa_multiflora Rmu_sc0002115.1_g000003 Rmu_sc0003381.1_g000010
rosa_roxburghii Rroxscaffold_6G00410780
rosa_rugosa Rorug03G0109300
rosa_samantha Rh3AG159700 Rh3BG184200
rosa_wichuraiana Rw3G015110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 861
AccB7I CCANNNNNTGG 3 cut(s) 43, 89, 816
AccI GTMKAC 3 cut(s) 357, 584, 840
AciI CCGC 2 cut(s) 729, 783
AclWI GGATC 3 cut(s) 51, 64, 473
AcoI YGGCCR 3 cut(s) 77, 98, 448
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 386
AfeI AGCGCT 1 cut(s) 717
AfiI CCNNNNNNNGG 4 cut(s) 43, 89, 352, 816
AgsI TTSAA 2 cut(s) 226, 824
AjnI CCWGG 3 cut(s) 88, 280, 337
AluBI AGCT 2 cut(s) 105, 743
AluI AGCT 2 cut(s) 105, 743
Alw26I GTCTC 1 cut(s) 861
AlwI GGATC 3 cut(s) 51, 64, 473
Aor51HI AGCGCT 1 cut(s) 717
AoxI GGCC 3 cut(s) 77, 98, 448
ApeKI GCWGC 1 cut(s) 723
ApoI RAATTY 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 239
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 2 cut(s) 155, 175
AsuHPI GGTGA 4 cut(s) 78, 181, 443, 488
AvaII GGWCC 2 cut(s) 155, 175
AxyI CCTNAGG 1 cut(s) 211
BalI TGGCCA 2 cut(s) 79, 100
BamHI GGATCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 657
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 710
BccI CCATC 4 cut(s) 91, 200, 428, 810
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 3 cut(s) 90, 282, 339
BcoDI GTCTC 1 cut(s) 861
BfaI CTAG 1 cut(s) 522
BfoI RGCGCY 1 cut(s) 719
BisI GCNGC 1 cut(s) 724
BlsI GCNGC 1 cut(s) 725
Bme1390I CCNGG 3 cut(s) 90, 282, 339
Bme18I GGWCC 2 cut(s) 155, 175
BmgT120I GGNCC 2 cut(s) 155, 175
BmiI GGNNCC 6 cut(s) 58, 118, 156, 344, 518, 619
BmrFI CCNGG 3 cut(s) 90, 282, 339
BmsI GCATC 2 cut(s) 172, 619
BpiI GAAGAC 1 cut(s) 657
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 861
BsaJI CCNNGG 2 cut(s) 108, 338
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 89, 352, 816
Bse21I CCTNAGG 1 cut(s) 211
BseBI CCWGG 3 cut(s) 90, 282, 339
BseDI CCNNGG 2 cut(s) 108, 338
BseGI GGATG 3 cut(s) 334, 550, 634
BseLI CCNNNNNNNGG 4 cut(s) 43, 89, 352, 816
BseMII CTCAG 3 cut(s) 75, 173, 225
BseXI GCAGC 1 cut(s) 710
BsgI GTGCAG 1 cut(s) 709
BshFI GGCC 3 cut(s) 79, 100, 450
BsiSI CCGG 1 cut(s) 884
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 4 cut(s) 43, 89, 352, 816
BsmAI GTCTC 1 cut(s) 861
BsmFI GGGAC 1 cut(s) 388
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 3 cut(s) 79, 100, 450
Bso31I GGTCTC 1 cut(s) 861
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 4 cut(s) 15, 56, 245, 478
BspACI CCGC 2 cut(s) 729, 783
BspANI GGCC 3 cut(s) 79, 100, 450
BspCNI CTCAG 3 cut(s) 74, 172, 224
BspLI GGNNCC 6 cut(s) 58, 118, 156, 344, 518, 619
BspPI GGATC 3 cut(s) 51, 64, 473
BspTNI GGTCTC 1 cut(s) 861
BssECI CCNNGG 2 cut(s) 108, 338
BssMI GATC 4 cut(s) 15, 56, 245, 478
BssNAI GTATAC 1 cut(s) 841
BssT1I CCWWGG 1 cut(s) 108
Bst1107I GTATAC 1 cut(s) 841
Bst2UI CCWGG 3 cut(s) 90, 282, 339
Bst4CI ACNGT 2 cut(s) 656, 776
Bst6I CTCTTC 2 cut(s) 27, 569
BstDEI CTNAG 3 cut(s) 61, 159, 211
BstF5I GGATG 3 cut(s) 334, 550, 634
BstH2I RGCGCY 1 cut(s) 719
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 4 cut(s) 18, 59, 248, 481
BstMAI GTCTC 1 cut(s) 861
BstMBI GATC 4 cut(s) 15, 56, 245, 478
BstNI CCWGG 3 cut(s) 90, 282, 339
BstSCI CCNGG 3 cut(s) 88, 280, 337
BstV1I GCAGC 1 cut(s) 710
BstV2I GAAGAC 1 cut(s) 657
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BstZ17I GTATAC 1 cut(s) 841
Bsu36I CCTNAGG 1 cut(s) 211
BsuRI GGCC 3 cut(s) 79, 100, 450
BtsCI GGATG 3 cut(s) 334, 550, 634
BtsI GCAGTG 2 cut(s) 288, 690
BtsIMutI CAGTG 4 cut(s) 69, 237, 288, 690
CfoI GCGC 1 cut(s) 718
Cfr13I GGNCC 2 cut(s) 155, 175
CseI GACGC 1 cut(s) 570
CsiI ACCWGGT 1 cut(s) 88
CviAII CATG 2 cut(s) 347, 811
DdeI CTNAG 3 cut(s) 61, 159, 211
DpnI GATC 4 cut(s) 17, 58, 247, 480
DpnII GATC 4 cut(s) 15, 56, 245, 478
DraI TTTAAA 1 cut(s) 712
EaeI YGGCCR 3 cut(s) 77, 98, 448
Eam1104I CTCTTC 2 cut(s) 27, 569
EarI CTCTTC 2 cut(s) 27, 569
EciI GGCGGA 1 cut(s) 798
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 521
Eco31I GGTCTC 1 cut(s) 861
Eco47I GGWCC 2 cut(s) 155, 175
Eco47III AGCGCT 1 cut(s) 717
Eco57I CTGAAG 1 cut(s) 386
Eco81I CCTNAGG 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 155
EcoRII CCWGG 3 cut(s) 88, 280, 337
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 521
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 350, 814
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FaqI GGGAC 1 cut(s) 388
FatI CATG 2 cut(s) 346, 810
FauNDI CATATG 1 cut(s) 623
FblI GTMKAC 3 cut(s) 357, 584, 840
Fnu4HI GCNGC 1 cut(s) 724
FokI GGATG 3 cut(s) 321, 557, 641
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 1 cut(s) 724
FspBI CTAG 1 cut(s) 522
GlaI GCGC 1 cut(s) 717
GluI GCNGC 1 cut(s) 724
GsuI CTGGAG 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 719
HaeIII GGCC 3 cut(s) 79, 100, 450
HapII CCGG 1 cut(s) 884
HgaI GACGC 1 cut(s) 570
HhaI GCGC 1 cut(s) 718
Hin1II CATG 2 cut(s) 350, 814
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HinfI GANTC 3 cut(s) 145, 222, 297
HpaII CCGG 1 cut(s) 884
HphI GGTGA 4 cut(s) 78, 181, 443, 488
Hpy166II GTNNAC 3 cut(s) 358, 585, 841
Hpy188I TCNGA 3 cut(s) 168, 245, 405
Hpy188III TCNNGA 1 cut(s) 213
Hpy8I GTNNAC 3 cut(s) 358, 585, 841
HpyCH4III ACNGT 2 cut(s) 656, 776
HpyCH4V TGCA 2 cut(s) 726, 852
HpyF3I CTNAG 3 cut(s) 61, 159, 211
Hsp92II CATG 2 cut(s) 350, 814
HspAI GCGC 1 cut(s) 716
Kzo9I GATC 4 cut(s) 15, 56, 245, 478
LmnI GCTCC 3 cut(s) 110, 260, 516
Lsp1109I GCAGC 1 cut(s) 710
LweI GCATC 2 cut(s) 172, 619
MabI ACCWGGT 1 cut(s) 88
MaeI CTAG 1 cut(s) 522
MaeIII GTNAC 1 cut(s) 5
MalI GATC 4 cut(s) 17, 58, 247, 480
MboI GATC 4 cut(s) 15, 56, 245, 478
MboII GAAGA 6 cut(s) 14, 25, 573, 586, 627, 662
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 521
MlsI TGGCCA 2 cut(s) 79, 100
MluCI AATT 3 cut(s) 365, 706, 844
MluNI TGGCCA 2 cut(s) 79, 100
MlyI GAGTC 1 cut(s) 306
MmeI TCCRAC 2 cut(s) 301, 506
MnlI CCTC 8 cut(s) 70, 131, 168, 197, 220, 322, 346, 416
Mox20I TGGCCA 2 cut(s) 79, 100
MroXI GAANNNNTTC 1 cut(s) 239
MscI TGGCCA 2 cut(s) 79, 100
MseI TTAA 4 cut(s) 596, 711, 788, 878
MslI CAYNNNNRTG 1 cut(s) 501
Msp20I TGGCCA 2 cut(s) 79, 100
MspI CCGG 1 cut(s) 884
MspR9I CCNGG 3 cut(s) 90, 282, 339
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 3 cut(s) 90, 282, 339
NdeI CATATG 1 cut(s) 623
NdeII GATC 4 cut(s) 15, 56, 245, 478
NlaIII CATG 2 cut(s) 350, 814
NlaIV GGNNCC 6 cut(s) 58, 118, 156, 344, 518, 619
NmeAIII GCCGAG 1 cut(s) 699
PctI GAATGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 239
PfeI GAWTC 2 cut(s) 145, 222
PflMI CCANNNNNTGG 3 cut(s) 43, 89, 816
PkrI GCNGC 1 cut(s) 725
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
PpuMI RGGWCCY 1 cut(s) 155
PsiI TTATAA 1 cut(s) 861
Psp5II RGGWCCY 1 cut(s) 155
Psp6I CCWGG 3 cut(s) 88, 280, 337
PspGI CCWGG 3 cut(s) 88, 280, 337
PspN4I GGNNCC 6 cut(s) 58, 118, 156, 344, 518, 619
PspPI GGNCC 2 cut(s) 155, 175
PspPPI RGGWCCY 1 cut(s) 155
PsuI RGATCY 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 4 cut(s) 596, 711, 788, 878
SatI GCNGC 1 cut(s) 724
Sau3AI GATC 4 cut(s) 15, 56, 245, 478
Sau96I GGNCC 2 cut(s) 155, 175
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 3 cut(s) 90, 282, 339
SduI GDGCHC 1 cut(s) 521
SetI ASST 9 cut(s) 91, 107, 114, 139, 212, 283, 357, 688, 745
SexAI ACCWGGT 1 cut(s) 88
SfaNI GCATC 2 cut(s) 172, 619
SinI GGWCC 2 cut(s) 155, 175
SmiMI CAYNNNNRTG 1 cut(s) 501
Sse9I AATT 3 cut(s) 365, 706, 844
SsiI CCGC 2 cut(s) 729, 783
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 3 cut(s) 88, 280, 337
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 656, 776
TasI AATT 3 cut(s) 365, 706, 844
TfiI GAWTC 2 cut(s) 145, 222
Tru1I TTAA 4 cut(s) 596, 711, 788, 878
Tru9I TTAA 4 cut(s) 596, 711, 788, 878
TscAI CASTG 4 cut(s) 69, 237, 295, 697
TseI GCWGC 1 cut(s) 723
TspDTI ATGAA 1 cut(s) 473
TspGWI ACGGA 2 cut(s) 662, 744
TspRI CASTG 4 cut(s) 69, 237, 295, 697
Van91I CCANNNNNTGG 3 cut(s) 43, 89, 816
VpaK11BI GGWCC 2 cut(s) 155, 175
XapI RAATTY 1 cut(s) 365
XmiI GTMKAC 3 cut(s) 357, 584, 840
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.