Prupe.7G128000_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011840
Physical Location & Seq
Reverse (-)
14860240 .. 14862286
2047 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G128000.1

Sequence Viewer

Length: 879 bp
ATGGCTCTCTTGCTCTTCCTCCTAATTCTTTTGGTCCCTGCAAGCAATGCTAATTGGCCACCATCACCTGGCTACTGGCCAAGTTCTAAATTCAGGTCTATGAGCTTTTATAAAGGGTTTAGAACTCTCTGGGGTCCTCAGCATCAAAGCTTAGACCAACATGCATTAACAATCTGGCTTGACAGGACCTCAGGTAGTGGGTTCAAGTCAGTTCGTCCATTTAGATCCGGCTACTTTGGTACCTCCATTAAACTTCAAACTGGTTACACAGCAGGAGTTATAACAGCTTTCTATCTTTCAAACAGTGAAGCTCATCCGGGGTACCATGACGAAGTCGACATTGAGTTTCTGGGAACTACATTTGGGAAGCCTTACACTTTACAAACAAATGTTTACATCAGAGGAAGTGGGGATGGAAAAATCATTGGCAGAGAGATGAAGTTTCATTTGTGGTTTGATCCCACTAAGGCTTTTCATCACTATGCTATATTGTGGAGCCCAAAGGAGATCATATTTTTGGTGGATGATGTGCCCATAAGGAGGTATCCTAGGAAAAGTGTAGCAACCTTTCCCTTGAGGCCAATGTGGGTGTATGGCTCAATATGGGATGCCTCATCTTGGGCAACTGAAGATGGGAAATACAAAGCAGATTACAGATATCAACCATTTGTTGCAAAGTATACCAATTTCAAAGCCGGCGGTTGCAGCGCCTATTCTCCCGCCTGGTGCCGCCCGGTATCTGCCTCCCCGTTCCGGTCGGGCGGGCTGACGCAACAGCAGTACAGGGTCATGAGGTGGGTTCAAACCAACCATTTGGTATATGACTATTGCAAGGACTACAAGAGGGACCATTCTCTAACACCTGAGTGTTGGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044248 GO:0044260 GO:0071554 GO:0071704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

293

Amino Acids

33.72

Weight (kDa)

9.52

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011840)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36870
fragaria_vesca FvH4_6g16550 FvH4_6g16550 FvH4_6g16550 FvH4_6g16550 FvH4_6g16550
malus_domestica MD04G1091200.v1.1 MD12G1109400.v1.1
prunus_persica Prupe.7G128000_v2.0.a1
pyrus_communis pycom04g08620
rosa_chinensis RchiOBHm_Chr3g0470461
rosa_laevigata RLG00000024264
rosa_multiflora Rmu_sc0002115.1_g000003 Rmu_sc0003381.1_g000010
rosa_roxburghii Rroxscaffold_6G00410780
rosa_rugosa Rorug03G0109300
rosa_samantha Rh3AG159700 Rh3BG184200
rosa_wichuraiana Rw3G015110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 111, 281
Acc65I GGTACC 2 cut(s) 239, 321
AccB1I GGYRCC 3 cut(s) 239, 321, 726
AccB7I CCANNNNNTGG 1 cut(s) 68
AccI GTMKAC 2 cut(s) 336, 680
AciI CCGC 4 cut(s) 699, 720, 730, 762
AclWI GGATC 2 cut(s) 219, 452
AcoI YGGCCR 2 cut(s) 56, 77
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 648
AfaI GTAC 3 cut(s) 241, 323, 782
AfiI CCNNNNNNNGG 4 cut(s) 68, 540, 618, 753
AgsI TTSAA 5 cut(s) 205, 257, 300, 691, 803
AjnI CCWGG 2 cut(s) 67, 722
AleI CACNNNNGTG 1 cut(s) 865
AluBI AGCT 4 cut(s) 105, 150, 287, 311
AluI AGCT 4 cut(s) 105, 150, 287, 311
AlwI GGATC 2 cut(s) 219, 452
AoxI GGCC 3 cut(s) 56, 77, 578
ApeKI GCWGC 1 cut(s) 705
ApoI RAATTY 1 cut(s) 89
Asp718I GGTACC 2 cut(s) 239, 321
AspA2I CCTAGG 1 cut(s) 548
AspLEI GCGC 2 cut(s) 710, 876
AspS9I GGNCC 4 cut(s) 34, 134, 186, 847
AsuC2I CCSGG 2 cut(s) 318, 734
AsuHPI GGTGA 1 cut(s) 57
AvaII GGWCC 4 cut(s) 34, 134, 186, 847
AvrII CCTAGG 1 cut(s) 548
AxyI CCTNAGG 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 534
BaeI ACNNNNGTAYC 2 cut(s) 223, 256
BalI TGGCCA 2 cut(s) 58, 79
BanI GGYRCC 3 cut(s) 239, 321, 726
BanII GRGCYC 1 cut(s) 500
BbvCI CCTCAGC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 717
BccI CCATC 3 cut(s) 70, 407, 626
BciT130I CCWGG 2 cut(s) 69, 724
BciVI GTATCC 1 cut(s) 555
BcnI CCSGG 2 cut(s) 318, 734
BfaI CTAG 1 cut(s) 549
BfoI RGCGCY 2 cut(s) 711, 877
BfuI GTATCC 1 cut(s) 555
BisI GCNGC 2 cut(s) 706, 730
BlnI CCTAGG 1 cut(s) 548
BlsI GCNGC 2 cut(s) 707, 731
Bme1390I CCNGG 4 cut(s) 69, 318, 724, 734
Bme18I GGWCC 4 cut(s) 34, 134, 186, 847
BmgT120I GGNCC 4 cut(s) 34, 134, 186, 847
BmiI GGNNCC 7 cut(s) 36, 135, 241, 323, 497, 728, 848
BmrFI CCNGG 4 cut(s) 69, 318, 724, 734
BmsI GCATC 2 cut(s) 151, 598
Bpu10I CCTNAGC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 595
BpuMI CCSGG 2 cut(s) 318, 734
BsaJI CCNNGG 2 cut(s) 317, 548
BsaWI WCCGGW 1 cut(s) 753
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 540, 618, 753
Bse118I RCCGGY 1 cut(s) 695
Bse1I ACTGG 2 cut(s) 80, 265
Bse21I CCTNAGG 1 cut(s) 190
Bse3DI GCAATG 1 cut(s) 52
BseBI CCWGG 2 cut(s) 69, 724
BseDI CCNNGG 2 cut(s) 317, 548
BseGI GGATG 4 cut(s) 313, 418, 529, 613
BseLI CCNNNNNNNGG 4 cut(s) 68, 540, 618, 753
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 3 cut(s) 152, 204, 855
BseNI ACTGG 2 cut(s) 80, 265
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 1 cut(s) 717
Bsh1285I CGRYCG 1 cut(s) 758
BshFI GGCC 3 cut(s) 58, 79, 580
BshNI GGYRCC 3 cut(s) 239, 321, 726
BsiEI CGRYCG 1 cut(s) 758
BsiSI CCGG 5 cut(s) 228, 317, 696, 734, 754
BslFI GGGAC 2 cut(s) 20, 860
BslI CCNNNNNNNGG 4 cut(s) 68, 540, 618, 753
BsmFI GGGAC 2 cut(s) 20, 860
BsnI GGCC 3 cut(s) 58, 79, 580
Bsp1286I GDGCHC 2 cut(s) 500, 534
Bsp143I GATC 3 cut(s) 224, 457, 507
BspACI CCGC 4 cut(s) 699, 720, 730, 762
BspANI GGCC 3 cut(s) 58, 79, 580
BspCNI CTCAG 3 cut(s) 151, 203, 856
BspHI TCATGA 1 cut(s) 789
BspLI GGNNCC 7 cut(s) 36, 135, 241, 323, 497, 728, 848
BspPI GGATC 2 cut(s) 219, 452
BspQI GCTCTTC 1 cut(s) 20
BspT107I GGYRCC 3 cut(s) 239, 321, 726
BsrDI GCAATG 1 cut(s) 52
BsrFI RCCGGY 1 cut(s) 695
BsrI ACTGG 2 cut(s) 80, 265
BssAI RCCGGY 1 cut(s) 695
BssECI CCNNGG 2 cut(s) 317, 548
BssMI GATC 3 cut(s) 224, 457, 507
BssNAI GTATAC 1 cut(s) 681
BssT1I CCWWGG 1 cut(s) 548
Bst1107I GTATAC 1 cut(s) 681
Bst2UI CCWGG 2 cut(s) 69, 724
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 20
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 3 cut(s) 43, 697, 764
BstDEI CTNAG 5 cut(s) 138, 151, 190, 465, 864
BstF5I GGATG 4 cut(s) 313, 418, 529, 613
BstH2I RGCGCY 2 cut(s) 711, 877
BstHHI GCGC 2 cut(s) 710, 876
BstKTI GATC 3 cut(s) 227, 460, 510
BstMBI GATC 3 cut(s) 224, 457, 507
BstMCI CGRYCG 1 cut(s) 758
BstMWI GCNNNNNNNGC 2 cut(s) 47, 705
BstNI CCWGG 2 cut(s) 69, 724
BstNSI RCATGY 1 cut(s) 164
BstSCI CCNGG 4 cut(s) 67, 316, 722, 732
BstSLI GKGCMC 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 717
BstX2I RGATCY 1 cut(s) 224
BstXI CCANNNNNNTGG 1 cut(s) 814
BstYI RGATCY 1 cut(s) 224
BstZ17I GTATAC 1 cut(s) 681
Bsu36I CCTNAGG 1 cut(s) 190
BsuI GTATCC 1 cut(s) 555
BsuRI GGCC 3 cut(s) 58, 79, 580
BtsCI GGATG 4 cut(s) 313, 418, 529, 613
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 3 cut(s) 43, 697, 764
CciI TCATGA 1 cut(s) 789
CfoI GCGC 2 cut(s) 710, 876
Cfr10I RCCGGY 1 cut(s) 695
Cfr13I GGNCC 4 cut(s) 34, 134, 186, 847
CseI GACGC 1 cut(s) 778
Csp6I GTAC 3 cut(s) 240, 322, 781
CviAII CATG 3 cut(s) 161, 326, 790
CviQI GTAC 3 cut(s) 240, 322, 781
DdeI CTNAG 5 cut(s) 138, 151, 190, 465, 864
DpnI GATC 3 cut(s) 226, 459, 509
DpnII GATC 3 cut(s) 224, 457, 507
EaeI YGGCCR 2 cut(s) 56, 77
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 548
Eco24I GRGCYC 1 cut(s) 500
Eco32I GATATC 1 cut(s) 659
Eco47I GGWCC 4 cut(s) 34, 134, 186, 847
Eco57I CTGAAG 1 cut(s) 648
Eco81I CCTNAGG 1 cut(s) 190
EcoO109I RGGNCCY 2 cut(s) 134, 186
EcoRII CCWGG 2 cut(s) 67, 722
EcoRV GATATC 1 cut(s) 659
EcoT14I CCWWGG 1 cut(s) 548
EcoT22I ATGCAT 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 500
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 3 cut(s) 164, 329, 793
FaqI GGGAC 2 cut(s) 20, 860
FatI CATG 3 cut(s) 160, 325, 789
FauI CCCGC 2 cut(s) 727, 755
FblI GTMKAC 2 cut(s) 336, 680
Fnu4HI GCNGC 2 cut(s) 706, 730
FokI GGATG 4 cut(s) 300, 425, 536, 620
FriOI GRGCYC 1 cut(s) 500
Fsp4HI GCNGC 2 cut(s) 706, 730
FspBI CTAG 1 cut(s) 549
GlaI GCGC 2 cut(s) 709, 875
GluI GCNGC 2 cut(s) 706, 730
HaeII RGCGCY 2 cut(s) 711, 877
HaeIII GGCC 3 cut(s) 58, 79, 580
HapII CCGG 5 cut(s) 228, 317, 696, 734, 754
HgaI GACGC 1 cut(s) 778
HhaI GCGC 2 cut(s) 710, 876
Hin1II CATG 3 cut(s) 164, 329, 793
Hin6I GCGC 2 cut(s) 708, 874
HinP1I GCGC 2 cut(s) 708, 874
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 148
HpaII CCGG 5 cut(s) 228, 317, 696, 734, 754
HphI GGTGA 1 cut(s) 57
Hpy166II GTNNAC 3 cut(s) 337, 394, 681
Hpy188I TCNGA 1 cut(s) 401
Hpy188III TCNNGA 1 cut(s) 790
Hpy8I GTNNAC 3 cut(s) 337, 394, 681
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 5 cut(s) 41, 164, 674, 705, 831
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 705
HpyF3I CTNAG 5 cut(s) 138, 151, 190, 465, 864
Hsp92II CATG 3 cut(s) 164, 329, 793
HspAI GCGC 2 cut(s) 708, 874
KpnI GGTACC 2 cut(s) 243, 325
KroI GCCGGC 1 cut(s) 695
KroNI GCCGGC 1 cut(s) 697
Kzo9I GATC 3 cut(s) 224, 457, 507
LguI GCTCTTC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 495
Lsp1109I GCAGC 1 cut(s) 717
LweI GCATC 2 cut(s) 151, 598
MaeI CTAG 1 cut(s) 549
MaeIII GTNAC 1 cut(s) 263
MalI GATC 3 cut(s) 226, 459, 509
MboI GATC 3 cut(s) 224, 457, 507
MboII GAAGA 2 cut(s) 7, 641
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 2 cut(s) 500, 534
MlsI TGGCCA 2 cut(s) 58, 79
MluCI AATT 4 cut(s) 24, 52, 89, 685
MluNI TGGCCA 2 cut(s) 58, 79
Mox20I TGGCCA 2 cut(s) 58, 79
Mph1103I ATGCAT 1 cut(s) 166
MroNI GCCGGC 1 cut(s) 695
MscI TGGCCA 2 cut(s) 58, 79
MseI TTAA 2 cut(s) 167, 249
MslI CAYNNNNRTG 2 cut(s) 480, 865
Msp20I TGGCCA 2 cut(s) 58, 79
MspI CCGG 5 cut(s) 228, 317, 696, 734, 754
MspR9I CCNGG 4 cut(s) 69, 318, 724, 734
MvaI CCWGG 2 cut(s) 69, 724
MwoI GCNNNNNNNGC 2 cut(s) 47, 705
NaeI GCCGGC 1 cut(s) 697
NciI CCSGG 2 cut(s) 318, 734
NdeII GATC 3 cut(s) 224, 457, 507
NgoMIV GCCGGC 1 cut(s) 695
NlaIII CATG 3 cut(s) 164, 329, 793
NlaIV GGNNCC 7 cut(s) 36, 135, 241, 323, 497, 728, 848
NsiI ATGCAT 1 cut(s) 166
NspI RCATGY 1 cut(s) 164
OliI CACNNNNGTG 1 cut(s) 865
PagI TCATGA 1 cut(s) 789
PciSI GCTCTTC 1 cut(s) 20
PdiI GCCGGC 1 cut(s) 697
PflFI GACNNNGTC 1 cut(s) 332
PflMI CCANNNNNTGG 1 cut(s) 68
PkrI GCNGC 2 cut(s) 707, 731
PpuMI RGGWCCY 2 cut(s) 134, 186
PsiI TTATAA 2 cut(s) 111, 281
Psp5II RGGWCCY 2 cut(s) 134, 186
Psp6I CCWGG 2 cut(s) 67, 722
PspGI CCWGG 2 cut(s) 67, 722
PspN4I GGNNCC 7 cut(s) 36, 135, 241, 323, 497, 728, 848
PspPI GGNCC 4 cut(s) 34, 134, 186, 847
PspPPI RGGWCCY 2 cut(s) 134, 186
PsuI RGATCY 1 cut(s) 224
PsyI GACNNNGTC 1 cut(s) 332
RsaI GTAC 3 cut(s) 241, 323, 782
RsaNI GTAC 3 cut(s) 240, 322, 781
RseI CAYNNNNRTG 2 cut(s) 480, 865
SalI GTCGAC 1 cut(s) 335
SapI GCTCTTC 1 cut(s) 20
SaqAI TTAA 2 cut(s) 167, 249
SatI GCNGC 2 cut(s) 706, 730
Sau3AI GATC 3 cut(s) 224, 457, 507
Sau96I GGNCC 4 cut(s) 34, 134, 186, 847
ScrFI CCNGG 4 cut(s) 69, 318, 724, 734
SduI GDGCHC 2 cut(s) 500, 534
SfaNI GCATC 2 cut(s) 151, 598
SinI GGWCC 4 cut(s) 34, 134, 186, 847
SmiMI CAYNNNNRTG 2 cut(s) 480, 865
SmlI CTYRAG 1 cut(s) 574
SmoI CTYRAG 1 cut(s) 574
Sse9I AATT 4 cut(s) 24, 52, 89, 685
SsiI CCGC 4 cut(s) 699, 720, 730, 762
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 4 cut(s) 67, 316, 722, 732
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 336
TasI AATT 4 cut(s) 24, 52, 89, 685
TatI WGTACW 1 cut(s) 780
TauI GCSGC 1 cut(s) 732
Tru1I TTAA 2 cut(s) 167, 249
Tru9I TTAA 2 cut(s) 167, 249
TscAI CASTG 1 cut(s) 310
TseI GCWGC 1 cut(s) 705
TspDTI ATGAA 3 cut(s) 434, 452, 464
TspRI CASTG 1 cut(s) 310
Tth111I GACNNNGTC 1 cut(s) 332
Van91I CCANNNNNTGG 1 cut(s) 68
VpaK11BI GGWCC 4 cut(s) 34, 134, 186, 847
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 164
XmaJI CCTAGG 1 cut(s) 548
XmiI GTMKAC 2 cut(s) 336, 680
XspI CTAG 1 cut(s) 549
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.