Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0011840

Physical Location & Seq

Genomic Coordinates Reverse (-)

17309362 .. 17312177

Gene Structure 2816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1109400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCTATCTTCCTGTTCCTCCTGATTCTTTTAGTCCCTGCAACCAATGCTGACTGGCCACCATCACCTGGCTACTGGCCAAGCTCTAAGTTCAGGTCTATGAGCTTTTATAAAGGATTCAAAACTCTCTGGGGTCCTCAGCATCAAAGCTTAGACCAAAATGCATTAACAGTCTGGCTTGATAGCACCACAGGAAGTGGGTTCAAATCAGTTCGTCCATTTAGATCCGGTTACTTTGGTGCCTCCATTAAGCTTCAAACTGGTTACACAGCAGGAGTCATAACAGCTTTCTATCTTTCAAACAGTGAAGCTCATCCAGGATACCATGATGAAGTGGACATTGAGTTTCTTGGGACAACATTTGGGAAGCCTTATACTTTGCAGACCAATGTTTACATCAGAGGAAGTGGGGATGGAAGAATTATTGGCAGGGAGATGAAGTTTCACTTGTGGTTTGATCCCACTAAGAATTTCCATCACTATGCTATATTATGGAGTCCCAAGGAGATAATATTTTTGGTTGATGATGTGCCCATAAGGAGGTATGCTAGGAAAAGTGTTGCAACATTTCCCTTAAGGCCAATGTGGGTTTATGGTTCAATTTGGGATGCCTCATCTTGGGCAACTGAAGATGGAAAATACAAGGCAGATTACAGATATCAACCATTTGTTGCCAAGTATACCAATTTCAAAGCCAGCGGTTGCTCCGCCTATTCCCCGGCATGGTGCCGCCCAGTGTCCGCCTCTCCCTTTCGGTCCGGCGGGCTGACCCGACAGCAGTACAGGACCATGAGATGGGTTCAAACCAACCATTTGGTATATGACTATTGCAGGGACCCCAAGAGGGACCATTCCAAAACACCTGAGTGTTGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044248 GO:0044260 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

293

Amino Acids

33.6

Weight (kDa)

9.47

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	37 - 219	4.2e-55	Glycosyl hydrolases family 16
XET_C	PF06955	254 - 290	4.9e-13	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36870
fragaria_vesca	FvH4_6g16550 FvH4_6g16550 FvH4_6g16550 FvH4_6g16550 FvH4_6g16550
malus_domestica	MD04G1091200.v1.1 MD12G1109400.v1.1
prunus_persica	Prupe.7G128000_v2.0.a1
pyrus_communis	pycom04g08620
rosa_chinensis	RchiOBHm_Chr3g0470461
rosa_laevigata	RLG00000024264
rosa_multiflora	Rmu_sc0002115.1_g000003 Rmu_sc0003381.1_g000010
rosa_roxburghii	Rroxscaffold_6G00410780
rosa_rugosa	Rorug03G0109300
rosa_samantha	Rh3AG159700 Rh3BG184200
rosa_wichuraiana	Rw3G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AccB1I	GGYRCC	2 cut(s)	239, 726
AccB7I	CCANNNNNTGG	2 cut(s)	68, 795
AccI	GTMKAC	1 cut(s)	680
AciI	CCGC	5 cut(s)	699, 708, 730, 741, 762
AclWI	GGATC	2 cut(s)	219, 452
AcoI	YGGCCR	2 cut(s)	56, 77
AcsI	RAATTY	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	648
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	6 cut(s)	68, 540, 618, 723, 795, 844
AflII	CTTAAG	1 cut(s)	574
AgsI	TTSAA	7 cut(s)	121, 205, 257, 300, 600, 691, 803
AjnI	CCWGG	2 cut(s)	67, 316
AleI	CACNNNNGTG	1 cut(s)	865
AluBI	AGCT	6 cut(s)	84, 105, 150, 253, 287, 311
AluI	AGCT	6 cut(s)	84, 105, 150, 253, 287, 311
AlwI	GGATC	2 cut(s)	219, 452
AoxI	GGCC	3 cut(s)	56, 77, 578
ApoI	RAATTY	1 cut(s)	469
AspS9I	GGNCC	5 cut(s)	134, 756, 786, 835, 847
AsuC2I	CCSGG	1 cut(s)	719
AsuHPI	GGTGA	1 cut(s)	57
AvaII	GGWCC	5 cut(s)	134, 756, 786, 835, 847
BaeGI	GKGCMC	1 cut(s)	534
BalI	TGGCCA	2 cut(s)	58, 79
BanI	GGYRCC	2 cut(s)	239, 726
BbvCI	CCTCAGC	1 cut(s)	138
BccI	CCATC	5 cut(s)	70, 407, 483, 626, 789
BciT130I	CCWGG	2 cut(s)	69, 318
BciVI	GTATCC	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	719
BfaI	CTAG	1 cut(s)	549
BfrI	CTTAAG	1 cut(s)	574
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	1 cut(s)	730
BlsI	GCNGC	1 cut(s)	731
Bme1390I	CCNGG	3 cut(s)	69, 318, 719
Bme18I	GGWCC	5 cut(s)	134, 756, 786, 835, 847
BmgT120I	GGNCC	5 cut(s)	134, 756, 786, 835, 847
BmiI	GGNNCC	6 cut(s)	135, 241, 728, 836, 837, 848
BmrFI	CCNGG	3 cut(s)	69, 318, 719
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	2 cut(s)	151, 598
BmuI	ACTGGG	1 cut(s)	728
Bpu10I	CCTNAGC	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	719
BsaJI	CCNNGG	2 cut(s)	501, 717
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	6 cut(s)	68, 540, 618, 723, 795, 844
Bse1I	ACTGG	4 cut(s)	59, 80, 265, 734
BseBI	CCWGG	2 cut(s)	69, 318
BseDI	CCNNGG	2 cut(s)	501, 717
BseGI	GGATG	3 cut(s)	313, 418, 613
BseLI	CCNNNNNNNGG	6 cut(s)	68, 540, 618, 723, 795, 844
BseMII	CTCAG	2 cut(s)	152, 855
BseNI	ACTGG	4 cut(s)	59, 80, 265, 734
BseSI	GKGCMC	1 cut(s)	534
BshFI	GGCC	3 cut(s)	58, 79, 580
BshNI	GGYRCC	2 cut(s)	239, 726
BsiSI	CCGG	3 cut(s)	228, 719, 759
BslFI	GGGAC	5 cut(s)	20, 367, 483, 848, 860
BslI	CCNNNNNNNGG	6 cut(s)	68, 540, 618, 723, 795, 844
BsmFI	GGGAC	5 cut(s)	20, 367, 483, 848, 860
BsnI	GGCC	3 cut(s)	58, 79, 580
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	2 cut(s)	224, 457
BspACI	CCGC	5 cut(s)	699, 708, 730, 741, 762
BspANI	GGCC	3 cut(s)	58, 79, 580
BspCNI	CTCAG	2 cut(s)	151, 856
BspLI	GGNNCC	6 cut(s)	135, 241, 728, 836, 837, 848
BspPI	GGATC	2 cut(s)	219, 452
BspT107I	GGYRCC	2 cut(s)	239, 726
BspTI	CTTAAG	1 cut(s)	574
BsrI	ACTGG	4 cut(s)	59, 80, 265, 734
BssECI	CCNNGG	2 cut(s)	501, 717
BssMI	GATC	2 cut(s)	224, 457
BssNAI	GTATAC	1 cut(s)	681
BssT1I	CCWWGG	1 cut(s)	501
Bst1107I	GTATAC	1 cut(s)	681
Bst2UI	CCWGG	2 cut(s)	69, 318
Bst4CI	ACNGT	2 cut(s)	172, 305
BstAFI	CTTAAG	1 cut(s)	574
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	697, 764
BstDEI	CTNAG	5 cut(s)	87, 138, 151, 465, 864
BstF5I	GGATG	3 cut(s)	313, 418, 613
BstKTI	GATC	2 cut(s)	227, 460
BstMBI	GATC	2 cut(s)	224, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	2 cut(s)	69, 318
BstSCI	CCNGG	3 cut(s)	67, 316, 717
BstSLI	GKGCMC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	224
BstXI	CCANNNNNNTGG	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	224
BstZ17I	GTATAC	1 cut(s)	681
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	58, 79, 580
BtsCI	GGATG	3 cut(s)	313, 418, 613
BtsIMutI	CAGTG	2 cut(s)	310, 741
Cac8I	GCNNGC	2 cut(s)	697, 764
Cfr13I	GGNCC	5 cut(s)	134, 756, 786, 835, 847
CpoI	CGGWCCG	1 cut(s)	756
Csp6I	GTAC	1 cut(s)	781
CspI	CGGWCCG	1 cut(s)	756
CviAII	CATG	3 cut(s)	326, 723, 790
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	5 cut(s)	87, 138, 151, 465, 864
DpnI	GATC	2 cut(s)	226, 459
DpnII	GATC	2 cut(s)	224, 457
EaeI	YGGCCR	2 cut(s)	56, 77
EciI	GGCGGA	2 cut(s)	697, 730
Eco130I	CCWWGG	1 cut(s)	501
Eco32I	GATATC	1 cut(s)	659
Eco47I	GGWCC	5 cut(s)	134, 756, 786, 835, 847
Eco57I	CTGAAG	1 cut(s)	648
EcoO109I	RGGNCCY	2 cut(s)	134, 835
EcoRII	CCWGG	2 cut(s)	67, 316
EcoRV	GATATC	1 cut(s)	659
EcoT14I	CCWWGG	1 cut(s)	501
EcoT22I	ATGCAT	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	3 cut(s)	329, 726, 793
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FaqI	GGGAC	5 cut(s)	20, 367, 483, 848, 860
FatI	CATG	3 cut(s)	325, 722, 789
FauI	CCCGC	1 cut(s)	755
FblI	GTMKAC	1 cut(s)	680
Fnu4HI	GCNGC	1 cut(s)	730
FokI	GGATG	3 cut(s)	300, 425, 620
Fsp4HI	GCNGC	1 cut(s)	730
FspBI	CTAG	1 cut(s)	549
GluI	GCNGC	1 cut(s)	730
HaeIII	GGCC	3 cut(s)	58, 79, 580
HapII	CCGG	3 cut(s)	228, 719, 759
Hin1II	CATG	3 cut(s)	329, 726, 793
HindIII	AAGCTT	2 cut(s)	148, 251
HinfI	GANTC	4 cut(s)	25, 117, 276, 496
HpaII	CCGG	3 cut(s)	228, 719, 759
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	3 cut(s)	337, 394, 681
Hpy188I	TCNGA	1 cut(s)	401
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	3 cut(s)	337, 394, 681
HpyCH4III	ACNGT	2 cut(s)	172, 305
HpyCH4V	TGCA	5 cut(s)	41, 164, 382, 563, 831
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	5 cut(s)	87, 138, 151, 465, 864
Hsp92II	CATG	3 cut(s)	329, 726, 793
KflI	GGGWCCC	1 cut(s)	835
Kzo9I	GATC	2 cut(s)	224, 457
LmnI	GCTCC	1 cut(s)	710
LweI	GCATC	2 cut(s)	151, 598
MaeI	CTAG	1 cut(s)	549
MaeIII	GTNAC	2 cut(s)	230, 263
MalI	GATC	2 cut(s)	226, 459
MboI	GATC	2 cut(s)	224, 457
MboII	GAAGA	2 cut(s)	429, 641
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	534
MlsI	TGGCCA	2 cut(s)	58, 79
MluCI	AATT	4 cut(s)	420, 469, 600, 685
MluNI	TGGCCA	2 cut(s)	58, 79
MlyI	GAGTC	2 cut(s)	285, 505
MnlI	CCTC	8 cut(s)	29, 147, 253, 395, 534, 622, 754, 837
Mox20I	TGGCCA	2 cut(s)	58, 79
Mph1103I	ATGCAT	1 cut(s)	166
MscI	TGGCCA	2 cut(s)	58, 79
MseI	TTAA	3 cut(s)	167, 249, 575
MslI	CAYNNNNRTG	2 cut(s)	480, 865
Msp20I	TGGCCA	2 cut(s)	58, 79
MspA1I	CMGCKG	1 cut(s)	699
MspCI	CTTAAG	1 cut(s)	574
MspI	CCGG	3 cut(s)	228, 719, 759
MspR9I	CCNGG	3 cut(s)	69, 318, 719
MvaI	CCWGG	2 cut(s)	69, 318
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	719
NdeII	GATC	2 cut(s)	224, 457
NlaIII	CATG	3 cut(s)	329, 726, 793
NlaIV	GGNNCC	6 cut(s)	135, 241, 728, 836, 837, 848
NsiI	ATGCAT	1 cut(s)	166
OliI	CACNNNNGTG	1 cut(s)	865
PfeI	GAWTC	2 cut(s)	25, 117
PflMI	CCANNNNNTGG	2 cut(s)	68, 795
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	731
PleI	GAGTC	2 cut(s)	284, 504
PpsI	GAGTC	2 cut(s)	284, 504
PpuMI	RGGWCCY	2 cut(s)	134, 835
PsiI	TTATAA	1 cut(s)	111
Psp5II	RGGWCCY	2 cut(s)	134, 835
Psp6I	CCWGG	2 cut(s)	67, 316
PspGI	CCWGG	2 cut(s)	67, 316
PspN4I	GGNNCC	6 cut(s)	135, 241, 728, 836, 837, 848
PspPI	GGNCC	5 cut(s)	134, 756, 786, 835, 847
PspPPI	RGGWCCY	2 cut(s)	134, 835
PsuI	RGATCY	1 cut(s)	224
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
RseI	CAYNNNNRTG	2 cut(s)	480, 865
Rsr2I	CGGWCCG	1 cut(s)	756
RsrII	CGGWCCG	1 cut(s)	756
SaqAI	TTAA	3 cut(s)	167, 249, 575
SatI	GCNGC	1 cut(s)	730
Sau3AI	GATC	2 cut(s)	224, 457
Sau96I	GGNCC	5 cut(s)	134, 756, 786, 835, 847
SchI	GAGTC	2 cut(s)	285, 505
ScrFI	CCNGG	3 cut(s)	69, 318, 719
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	2 cut(s)	151, 598
SinI	GGWCC	5 cut(s)	134, 756, 786, 835, 847
SmiMI	CAYNNNNRTG	2 cut(s)	480, 865
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	4 cut(s)	420, 469, 600, 685
SsiI	CCGC	5 cut(s)	699, 708, 730, 741, 762
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	1 cut(s)	549
StyD4I	CCNGG	3 cut(s)	67, 316, 717
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	172, 305
TaqII	GACCGA	1 cut(s)	744
TasI	AATT	4 cut(s)	420, 469, 600, 685
TatI	WGTACW	1 cut(s)	780
TauI	GCSGC	1 cut(s)	732
TfiI	GAWTC	2 cut(s)	25, 117
Tru1I	TTAA	3 cut(s)	167, 249, 575
Tru9I	TTAA	3 cut(s)	167, 249, 575
TscAI	CASTG	2 cut(s)	310, 741
TspDTI	ATGAA	2 cut(s)	345, 452
TspRI	CASTG	2 cut(s)	310, 741
Van91I	CCANNNNNTGG	2 cut(s)	68, 795
Vha464I	CTTAAG	1 cut(s)	574
VpaK11BI	GGWCC	5 cut(s)	134, 756, 786, 835, 847
XapI	RAATTY	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	680
XspI	CTAG	1 cut(s)	549
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.