pycom04g08620

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
10409864 .. 10412042
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g08620.1

Sequence Viewer

Length: 879 bp
ATGGCTATCTTCCTCTTCCTCCTAATTCTTTTAGTCCCTGCAACCAATGCTGATTGGCCACCATCTCCTGGCTACTGGCCAAGCTCTAAGTTCAGGTCTATGAGCTTTTATAAGGGATTCAAACCTCTCTGGGGTCCTCAGCATCAAAGCATATACCAAAGTGCATTAACAATCTGGCTTGACAGAACCACAGGAAGTGGGTTCAAATCAGTTCGTCCATTTAGATCCGGTTACTTTGGTGCCTCCATTAAGCTTCAAACTGGTTACACAGCAGGAGTCATAACAGCTTTCTATCTTTCAAACAGTGAAGCTCATCCTGGGTACCATGATGAAGTGGACATTGAGTTTCTTGGGACTACATTTGGGAAGCCTTATACCTTGCAGACCAATGTTTACATCAGAGGAAGCGGGGATGGAAGAATTGTTGGCAGAGAGATGAAGTTTCACTTGTGGTTTGATCCCACTAAAAATTTCCATCACTATGCTATATTATGGAGTCCCAAGGAGATCATATTTTTGGTGGATGATGTGCCCATAAGGAGGTATGCCAGGAAAAGTGTTGCAACGTTTCCCTTAAGGCCAATGTGGGTTTATGGTTCAATTTGGGATGCTTCATCTTGGGCAACCGAAGATGGAAAATACAAAGCTGATTACAGATATCAACCATTTGTTGCAAAGTATACCAATTTCAAAGCCGGTGGTTGCTCTGCCTATTCCCCCGCTTGGTGCCGCCCGGTGTCTGCCTCTCCCTTCCGGTCGGGCGGGCTAACGCGACAGCAGCACAGGACCATGAGATGGGTTCAACGCAACCATTTGGTATATGACTATTGCAGGGACCCCAAGAGGGACCATTCCAAAACACCCGAATGTTGGGGCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

293

Amino Acids

33.69

Weight (kDa)

9.64

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 37 - 219 4.4e-55 Glycosyl hydrolases family 16
XET_C PF06955 254 - 290 1.1e-13 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011840)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 111
Acc65I GGTACC 1 cut(s) 321
AccB1I GGYRCC 3 cut(s) 239, 321, 726
AccB7I CCANNNNNTGG 2 cut(s) 68, 795
AccI GTMKAC 1 cut(s) 680
AccII CGCG 1 cut(s) 772
AciI CCGC 4 cut(s) 408, 720, 730, 762
AclI AACGTT 1 cut(s) 566
AclWI GGATC 2 cut(s) 219, 452
AcoI YGGCCR 2 cut(s) 56, 77
AcsI RAATTY 1 cut(s) 469
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 7 cut(s) 68, 131, 540, 723, 795, 844, 870
AflII CTTAAG 1 cut(s) 574
AgsI TTSAA 7 cut(s) 121, 205, 257, 300, 600, 691, 803
AjnI CCWGG 3 cut(s) 67, 316, 548
AluBI AGCT 6 cut(s) 84, 105, 253, 287, 311, 647
AluI AGCT 6 cut(s) 84, 105, 253, 287, 311, 647
AlwI GGATC 2 cut(s) 219, 452
AoxI GGCC 3 cut(s) 56, 77, 578
ApeKI GCWGC 1 cut(s) 778
ApoI RAATTY 1 cut(s) 469
Asp718I GGTACC 1 cut(s) 321
AspS9I GGNCC 4 cut(s) 134, 786, 835, 847
AsuC2I CCSGG 1 cut(s) 734
AvaII GGWCC 4 cut(s) 134, 786, 835, 847
BaeGI GKGCMC 1 cut(s) 534
BalI TGGCCA 2 cut(s) 58, 79
BanI GGYRCC 3 cut(s) 239, 321, 726
BbvCI CCTCAGC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 790
BccI CCATC 5 cut(s) 70, 407, 483, 626, 789
BciT130I CCWGG 3 cut(s) 69, 318, 550
BcnI CCSGG 1 cut(s) 734
BfrI CTTAAG 1 cut(s) 574
BisI GCNGC 2 cut(s) 730, 779
BlsI GCNGC 2 cut(s) 731, 780
Bme1390I CCNGG 4 cut(s) 69, 318, 550, 734
Bme18I GGWCC 4 cut(s) 134, 786, 835, 847
BmgT120I GGNCC 4 cut(s) 134, 786, 835, 847
BmiI GGNNCC 7 cut(s) 135, 241, 323, 728, 836, 837, 848
BmrFI CCNGG 4 cut(s) 69, 318, 550, 734
BmsI GCATC 2 cut(s) 151, 598
Bpu10I CCTNAGC 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 734
BsaJI CCNNGG 2 cut(s) 317, 501
BsaWI WCCGGW 2 cut(s) 227, 753
Bsc4I CCNNNNNNNGG 7 cut(s) 68, 131, 540, 723, 795, 844, 870
Bse118I RCCGGY 1 cut(s) 695
Bse1I ACTGG 2 cut(s) 80, 265
BseBI CCWGG 3 cut(s) 69, 318, 550
BseDI CCNNGG 2 cut(s) 317, 501
BseGI GGATG 4 cut(s) 313, 418, 529, 613
BseLI CCNNNNNNNGG 7 cut(s) 68, 131, 540, 723, 795, 844, 870
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 2 cut(s) 80, 265
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 1 cut(s) 790
Bsh1236I CGCG 1 cut(s) 772
Bsh1285I CGRYCG 1 cut(s) 758
BshFI GGCC 3 cut(s) 58, 79, 580
BshNI GGYRCC 3 cut(s) 239, 321, 726
BsiEI CGRYCG 1 cut(s) 758
BsiSI CCGG 4 cut(s) 228, 696, 734, 754
BslFI GGGAC 5 cut(s) 20, 367, 483, 848, 860
BslI CCNNNNNNNGG 7 cut(s) 68, 131, 540, 723, 795, 844, 870
BsmFI GGGAC 5 cut(s) 20, 367, 483, 848, 860
BsnI GGCC 3 cut(s) 58, 79, 580
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 3 cut(s) 224, 457, 507
BspACI CCGC 4 cut(s) 408, 720, 730, 762
BspANI GGCC 3 cut(s) 58, 79, 580
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 1 cut(s) 772
BspLI GGNNCC 7 cut(s) 135, 241, 323, 728, 836, 837, 848
BspPI GGATC 2 cut(s) 219, 452
BspT107I GGYRCC 3 cut(s) 239, 321, 726
BspTI CTTAAG 1 cut(s) 574
BsrFI RCCGGY 1 cut(s) 695
BsrI ACTGG 2 cut(s) 80, 265
BssAI RCCGGY 1 cut(s) 695
BssECI CCNNGG 2 cut(s) 317, 501
BssMI GATC 3 cut(s) 224, 457, 507
BssNAI GTATAC 1 cut(s) 681
BssT1I CCWWGG 1 cut(s) 501
Bst1107I GTATAC 1 cut(s) 681
Bst2UI CCWGG 3 cut(s) 69, 318, 550
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 20
BstAFI CTTAAG 1 cut(s) 574
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 764
BstDEI CTNAG 2 cut(s) 87, 138
BstF5I GGATG 4 cut(s) 313, 418, 529, 613
BstFNI CGCG 1 cut(s) 772
BstKTI GATC 3 cut(s) 227, 460, 510
BstMBI GATC 3 cut(s) 224, 457, 507
BstMCI CGRYCG 1 cut(s) 758
BstMWI GCNNNNNNNGC 2 cut(s) 47, 778
BstNI CCWGG 3 cut(s) 69, 318, 550
BstSCI CCNGG 4 cut(s) 67, 316, 548, 732
BstSLI GKGCMC 1 cut(s) 534
BstUI CGCG 1 cut(s) 772
BstV1I GCAGC 1 cut(s) 790
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
BstZ17I GTATAC 1 cut(s) 681
BsuRI GGCC 3 cut(s) 58, 79, 580
BtsCI GGATG 4 cut(s) 313, 418, 529, 613
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 764
Cfr10I RCCGGY 1 cut(s) 695
Cfr13I GGNCC 4 cut(s) 134, 786, 835, 847
Csp6I GTAC 1 cut(s) 322
CspCI CAANNNNNGTGG 2 cut(s) 679, 714
CviAII CATG 2 cut(s) 326, 790
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 87, 138
DpnI GATC 3 cut(s) 226, 459, 509
DpnII GATC 3 cut(s) 224, 457, 507
EaeI YGGCCR 2 cut(s) 56, 77
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 501
Eco32I GATATC 1 cut(s) 659
Eco47I GGWCC 4 cut(s) 134, 786, 835, 847
EcoO109I RGGNCCY 2 cut(s) 134, 835
EcoRII CCWGG 3 cut(s) 67, 316, 548
EcoRV GATATC 1 cut(s) 659
EcoT14I CCWWGG 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 2 cut(s) 329, 793
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FaqI GGGAC 5 cut(s) 20, 367, 483, 848, 860
FatI CATG 2 cut(s) 325, 789
FauI CCCGC 3 cut(s) 401, 727, 755
FblI GTMKAC 1 cut(s) 680
Fnu4HI GCNGC 2 cut(s) 730, 779
FokI GGATG 4 cut(s) 300, 425, 536, 620
Fsp4HI GCNGC 2 cut(s) 730, 779
GluI GCNGC 2 cut(s) 730, 779
HaeIII GGCC 3 cut(s) 58, 79, 580
HapII CCGG 4 cut(s) 228, 696, 734, 754
Hin1II CATG 2 cut(s) 329, 793
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 3 cut(s) 117, 276, 496
HpaII CCGG 4 cut(s) 228, 696, 734, 754
Hpy166II GTNNAC 3 cut(s) 337, 394, 681
Hpy188I TCNGA 1 cut(s) 401
Hpy8I GTNNAC 3 cut(s) 337, 394, 681
HpyAV CCTTC 1 cut(s) 760
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 6 cut(s) 41, 164, 382, 563, 674, 831
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 778
HpyF3I CTNAG 2 cut(s) 87, 138
HpySE526I ACGT 1 cut(s) 566
Hsp92II CATG 2 cut(s) 329, 793
KflI GGGWCCC 1 cut(s) 835
KpnI GGTACC 1 cut(s) 325
Kzo9I GATC 3 cut(s) 224, 457, 507
Lsp1109I GCAGC 1 cut(s) 790
LweI GCATC 2 cut(s) 151, 598
MaeII ACGT 1 cut(s) 566
MaeIII GTNAC 2 cut(s) 230, 263
MalI GATC 3 cut(s) 226, 459, 509
MboI GATC 3 cut(s) 224, 457, 507
MboII GAAGA 3 cut(s) 7, 429, 641
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 534
MlsI TGGCCA 2 cut(s) 58, 79
MluCI AATT 5 cut(s) 24, 420, 469, 600, 685
MluNI TGGCCA 2 cut(s) 58, 79
MlyI GAGTC 2 cut(s) 285, 505
MnlI CCTC 9 cut(s) 23, 29, 135, 147, 253, 395, 534, 754, 837
Mox20I TGGCCA 2 cut(s) 58, 79
MscI TGGCCA 2 cut(s) 58, 79
MseI TTAA 3 cut(s) 167, 249, 575
MslI CAYNNNNRTG 2 cut(s) 480, 865
Msp20I TGGCCA 2 cut(s) 58, 79
MspCI CTTAAG 1 cut(s) 574
MspI CCGG 4 cut(s) 228, 696, 734, 754
MspR9I CCNGG 4 cut(s) 69, 318, 550, 734
MvaI CCWGG 3 cut(s) 69, 318, 550
MvnI CGCG 1 cut(s) 772
MwoI GCNNNNNNNGC 2 cut(s) 47, 778
NciI CCSGG 1 cut(s) 734
NdeII GATC 3 cut(s) 224, 457, 507
NlaIII CATG 2 cut(s) 329, 793
NlaIV GGNNCC 7 cut(s) 135, 241, 323, 728, 836, 837, 848
PfeI GAWTC 1 cut(s) 117
PflMI CCANNNNNTGG 2 cut(s) 68, 795
PkrI GCNGC 2 cut(s) 731, 780
PleI GAGTC 2 cut(s) 284, 504
PpsI GAGTC 2 cut(s) 284, 504
PpuMI RGGWCCY 2 cut(s) 134, 835
PsiI TTATAA 1 cut(s) 111
Psp1406I AACGTT 1 cut(s) 566
Psp5II RGGWCCY 2 cut(s) 134, 835
Psp6I CCWGG 3 cut(s) 67, 316, 548
PspGI CCWGG 3 cut(s) 67, 316, 548
PspN4I GGNNCC 7 cut(s) 135, 241, 323, 728, 836, 837, 848
PspPI GGNCC 4 cut(s) 134, 786, 835, 847
PspPPI RGGWCCY 2 cut(s) 134, 835
PsuI RGATCY 1 cut(s) 224
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 2 cut(s) 480, 865
SaqAI TTAA 3 cut(s) 167, 249, 575
SatI GCNGC 2 cut(s) 730, 779
Sau3AI GATC 3 cut(s) 224, 457, 507
Sau96I GGNCC 4 cut(s) 134, 786, 835, 847
SchI GAGTC 2 cut(s) 285, 505
ScrFI CCNGG 4 cut(s) 69, 318, 550, 734
SduI GDGCHC 1 cut(s) 534
SfaNI GCATC 2 cut(s) 151, 598
SinI GGWCC 4 cut(s) 134, 786, 835, 847
SmiMI CAYNNNNRTG 2 cut(s) 480, 865
SmlI CTYRAG 1 cut(s) 574
SmoI CTYRAG 1 cut(s) 574
Sse9I AATT 5 cut(s) 24, 420, 469, 600, 685
SsiI CCGC 4 cut(s) 408, 720, 730, 762
StyD4I CCNGG 4 cut(s) 67, 316, 548, 732
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 1 cut(s) 569
TasI AATT 5 cut(s) 24, 420, 469, 600, 685
TauI GCSGC 1 cut(s) 732
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 3 cut(s) 167, 249, 575
Tru9I TTAA 3 cut(s) 167, 249, 575
TscAI CASTG 1 cut(s) 310
TseI GCWGC 1 cut(s) 778
TspDTI ATGAA 3 cut(s) 345, 452, 603
TspRI CASTG 1 cut(s) 310
Van91I CCANNNNNTGG 2 cut(s) 68, 795
Vha464I CTTAAG 1 cut(s) 574
VpaK11BI GGWCC 4 cut(s) 134, 786, 835, 847
XapI RAATTY 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.