Rorug03G0109300

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
8778314 .. 8779507
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0109300.1

Sequence Viewer

Length: 786 bp
ATGGCTTCCATCAACTTCAACCCTTTTGAGGGCTGGTTCCGAAAACCCCCAAACCCACTCCCACCCATCAACCTCCTCTCCCTCGCCGACTCATTCTCCCCCAAAACCCCAACCCCCACCCCCCAATTCGCCTCCCTCAGCCTCTCAAACCCCTTCAAATCCCCCAGAAAAACCGACCCGAAATCCGAACCCGAGCCGGAGAAGCCCGGGCACTACACCCAGATGCTGGAGCAGTTCTTCTGGGAATGCGAGAACCTACCCGATTACAGACACACTCCAGAAGTGGACAAGATTCTAGACTCCGACCCGATTCTGGAGAAGAAAGAAAACCCGACTGAGGAGGAGATTAGAGAGAACGAGAAGTTCTGGGAGGAGTTTCGGGCCAGCCCGGTAATCAAGTTCTTGACCCGGGCCGAGCAGATTGCCGATAAGATCAATGAGATGGAGCTGAAGGAGAACGAGAGGCCGTACAGGAGTGAGGACAAGAAGCTGTGGCAGGCTGTGCCGAATGTTATTGGGCCGGACGGGAGGCCCATGCCGAGGAAGGCGATTAAGACGAAGAAGGAGTCTGACGACAAGTTCTTTTTCGGGCTTTGGGGGTTCCAGCAGAGGCCTGGCTCTGTGCTAACAACAATATTGGAACAGGATCACATGCCAAACAAATACGTTCTTAAAGATCTTAGGCTCGAGCTCTCTAGAATTATCCCTGGTTTGAGGCCATCGGAGGTTTTGAGTGTGGAACAAGCAATGGATCAGATAACTTACGAGGGAGAGTGGTATCGCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

261

Amino Acids

30.55

Weight (kDa)

5.29

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011840)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 226
AclWI GGATC 2 cut(s) 654, 759
AcuI CTGAAG 1 cut(s) 470
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 6 cut(s) 28, 29, 226, 313, 337, 540
AgsI TTSAA 2 cut(s) 19, 157
AjnI CCWGG 2 cut(s) 613, 706
AluBI AGCT 3 cut(s) 448, 490, 691
AluI AGCT 3 cut(s) 448, 490, 691
Alw21I GWGCWC 1 cut(s) 693
AlwI GGATC 2 cut(s) 654, 759
AlwNI CAGNNNCTG 1 cut(s) 226
Ama87I CYCGRG 4 cut(s) 191, 206, 408, 686
AoxI GGCC 7 cut(s) 381, 411, 464, 518, 530, 611, 716
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
AspS9I GGNCC 4 cut(s) 381, 411, 518, 531
AsuC2I CCSGG 5 cut(s) 207, 208, 389, 409, 410
AvaI CYCGRG 4 cut(s) 191, 206, 408, 686
BaeGI GKGCMC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 693
Bbv12I GWGCWC 1 cut(s) 693
BbvCI CCTCAGC 1 cut(s) 137
BccI CCATC 4 cut(s) 17, 74, 436, 727
BceAI ACGGC 1 cut(s) 451
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciT130I CCWGG 2 cut(s) 615, 708
BcnI CCSGG 5 cut(s) 207, 208, 389, 409, 410
BfaI CTAG 2 cut(s) 296, 696
BglII AGATCT 1 cut(s) 676
Bme1390I CCNGG 7 cut(s) 207, 208, 389, 409, 410, 615, 708
BmeT110I CYCGRG 4 cut(s) 191, 206, 408, 686
BmgT120I GGNCC 4 cut(s) 381, 411, 518, 531
BmiI GGNNCC 2 cut(s) 38, 602
BmrFI CCNGG 7 cut(s) 207, 208, 389, 409, 410, 615, 708
BmsI GCATC 1 cut(s) 213
BpmI CTGGAG 3 cut(s) 248, 261, 335
Bpu10I CCTNAGC 1 cut(s) 137
BpuMI CCSGG 5 cut(s) 207, 208, 389, 409, 410
BsaJI CCNNGG 4 cut(s) 206, 408, 539, 706
BsaXI ACNNNNNCTCC 4 cut(s) 62, 80, 92, 110
Bsc4I CCNNNNNNNGG 6 cut(s) 28, 29, 226, 313, 337, 540
Bse3DI GCAATG 1 cut(s) 753
BseBI CCWGG 2 cut(s) 615, 708
BseDI CCNNGG 4 cut(s) 206, 408, 539, 706
BseLI CCNNNNNNNGG 6 cut(s) 28, 29, 226, 313, 337, 540
BseMI GCAATG 1 cut(s) 753
BseMII CTCAG 2 cut(s) 151, 327
BseRI GAGGAG 4 cut(s) 65, 353, 356, 386
BseSI GKGCMC 1 cut(s) 213
BshFI GGCC 7 cut(s) 383, 413, 466, 520, 532, 613, 718
BsiHKAI GWGCWC 1 cut(s) 693
BsiHKCI CYCGRG 4 cut(s) 191, 206, 408, 686
BsiSI CCGG 5 cut(s) 197, 207, 389, 409, 521
BslI CCNNNNNNNGG 6 cut(s) 28, 29, 226, 313, 337, 540
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 7 cut(s) 383, 413, 466, 520, 532, 613, 718
BsoBI CYCGRG 4 cut(s) 191, 206, 408, 686
Bsp1286I GDGCHC 2 cut(s) 213, 693
Bsp143I GATC 4 cut(s) 432, 646, 676, 751
BspANI GGCC 7 cut(s) 383, 413, 466, 520, 532, 613, 718
BspCNI CTCAG 2 cut(s) 150, 328
BspLI GGNNCC 2 cut(s) 38, 602
BspPI GGATC 2 cut(s) 654, 759
BsrDI GCAATG 1 cut(s) 753
BssECI CCNNGG 4 cut(s) 206, 408, 539, 706
BssMI GATC 4 cut(s) 432, 646, 676, 751
Bst2UI CCWGG 2 cut(s) 615, 708
BstAPI GCANNNNNTGC 1 cut(s) 502
BstC8I GCNNGC 2 cut(s) 385, 498
BstDEI CTNAG 3 cut(s) 137, 336, 680
BstKTI GATC 4 cut(s) 435, 649, 679, 754
BstMBI GATC 4 cut(s) 432, 646, 676, 751
BstMWI GCNNNNNNNGC 2 cut(s) 202, 502
BstNI CCWGG 2 cut(s) 615, 708
BstNSI RCATGY 1 cut(s) 655
BstSCI CCNGG 7 cut(s) 205, 206, 387, 407, 408, 613, 706
BstSLI GKGCMC 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
BsuRI GGCC 7 cut(s) 383, 413, 466, 520, 532, 613, 718
Cac8I GCNNGC 2 cut(s) 385, 498
CaiI CAGNNNCTG 1 cut(s) 226
Cfr13I GGNCC 4 cut(s) 381, 411, 518, 531
Cfr9I CCCGGG 2 cut(s) 206, 408
Csp6I GTAC 1 cut(s) 469
CviAII CATG 2 cut(s) 535, 652
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 3 cut(s) 137, 336, 680
DpnI GATC 4 cut(s) 434, 648, 678, 753
DpnII GATC 4 cut(s) 432, 646, 676, 751
Ecl136II GAGCTC 1 cut(s) 691
Eco147I AGGCCT 1 cut(s) 613
Eco24I GRGCYC 1 cut(s) 693
Eco53kI GAGCTC 1 cut(s) 691
Eco57I CTGAAG 1 cut(s) 470
Eco88I CYCGRG 4 cut(s) 191, 206, 408, 686
EcoICRI GAGCTC 1 cut(s) 691
EcoRII CCWGG 2 cut(s) 613, 706
EcoT38I GRGCYC 1 cut(s) 693
FaeI CATG 2 cut(s) 538, 655
FaiI YATR 2 cut(s) 536, 653
FatI CATG 2 cut(s) 534, 651
FriOI GRGCYC 1 cut(s) 693
FspBI CTAG 2 cut(s) 296, 696
GsuI CTGGAG 3 cut(s) 248, 261, 335
HaeIII GGCC 7 cut(s) 383, 413, 466, 520, 532, 613, 718
HapII CCGG 5 cut(s) 197, 207, 389, 409, 521
Hin1II CATG 2 cut(s) 538, 655
HinfI GANTC 5 cut(s) 89, 292, 299, 310, 566
HpaII CCGG 5 cut(s) 197, 207, 389, 409, 521
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 6 cut(s) 41, 187, 304, 571, 724, 756
Hpy188III TCNNGA 5 cut(s) 278, 296, 314, 403, 696
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 4 cut(s) 163, 445, 538, 556
HpyCH4IV ACGT 1 cut(s) 666
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 502
HpyF3I CTNAG 3 cut(s) 137, 336, 680
HpySE526I ACGT 1 cut(s) 666
Hsp92II CATG 2 cut(s) 538, 655
Kzo9I GATC 4 cut(s) 432, 646, 676, 751
LmnI GCTCC 2 cut(s) 229, 445
LweI GCATC 1 cut(s) 213
MaeI CTAG 2 cut(s) 296, 696
MaeII ACGT 1 cut(s) 666
MalI GATC 4 cut(s) 434, 648, 678, 753
MboI GATC 4 cut(s) 432, 646, 676, 751
MboII GAAGA 3 cut(s) 229, 331, 571
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 2 cut(s) 213, 693
MluCI AATT 2 cut(s) 125, 699
MlyI GAGTC 3 cut(s) 83, 293, 575
MmeI TCCRAC 1 cut(s) 327
MseI TTAA 2 cut(s) 552, 672
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 5 cut(s) 197, 207, 389, 409, 521
MspR9I CCNGG 7 cut(s) 207, 208, 389, 409, 410, 615, 708
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 2 cut(s) 615, 708
MwoI GCNNNNNNNGC 2 cut(s) 202, 502
NciI CCSGG 5 cut(s) 207, 208, 389, 409, 410
NdeII GATC 4 cut(s) 432, 646, 676, 751
NlaIII CATG 2 cut(s) 538, 655
NlaIV GGNNCC 2 cut(s) 38, 602
NmeAIII GCCGAG 2 cut(s) 439, 564
NspI RCATGY 1 cut(s) 655
PaeR7I CTCGAG 1 cut(s) 686
PceI AGGCCT 1 cut(s) 613
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 292, 310
PflMI CCANNNNNTGG 1 cut(s) 226
PleI GAGTC 3 cut(s) 83, 293, 574
PpsI GAGTC 3 cut(s) 83, 293, 574
Psp124BI GAGCTC 1 cut(s) 693
Psp6I CCWGG 2 cut(s) 613, 706
PspGI CCWGG 2 cut(s) 613, 706
PspN4I GGNNCC 2 cut(s) 38, 602
PspPI GGNCC 4 cut(s) 381, 411, 518, 531
PspXI VCTCGAGB 1 cut(s) 686
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 676
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
RseI CAYNNNNRTG 1 cut(s) 221
SacI GAGCTC 1 cut(s) 693
SaqAI TTAA 2 cut(s) 552, 672
Sau3AI GATC 4 cut(s) 432, 646, 676, 751
Sau96I GGNCC 4 cut(s) 381, 411, 518, 531
SchI GAGTC 3 cut(s) 83, 293, 575
ScrFI CCNGG 7 cut(s) 207, 208, 389, 409, 410, 615, 708
SduI GDGCHC 2 cut(s) 213, 693
SetI ASST 7 cut(s) 75, 258, 450, 492, 669, 693, 729
SfaNI GCATC 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 686
SlaI CTCGAG 1 cut(s) 686
SmaI CCCGGG 2 cut(s) 208, 410
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
SrfI GCCCGGGC 1 cut(s) 208
Sse9I AATT 2 cut(s) 125, 699
SseBI AGGCCT 1 cut(s) 613
SspI AATATT 1 cut(s) 636
SspMI CTAG 2 cut(s) 296, 696
SstI GAGCTC 1 cut(s) 693
StuI AGGCCT 1 cut(s) 613
StyD4I CCNGG 7 cut(s) 205, 206, 387, 407, 408, 613, 706
TaiI ACGT 1 cut(s) 669
TaqI TCGA 1 cut(s) 687
TasI AATT 2 cut(s) 125, 699
TfiI GAWTC 2 cut(s) 292, 310
Tru1I TTAA 2 cut(s) 552, 672
Tru9I TTAA 2 cut(s) 552, 672
TspMI CCCGGG 2 cut(s) 206, 408
Van91I CCANNNNNTGG 1 cut(s) 226
XbaI TCTAGA 2 cut(s) 295, 695
XceI RCATGY 1 cut(s) 655
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XhoI CTCGAG 1 cut(s) 686
XmaI CCCGGG 2 cut(s) 206, 408
XspI CTAG 2 cut(s) 296, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.