AT2G37195

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009407
Physical Location & Seq
Forward (+)
15620257 .. 15621880
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37195.1

Sequence Viewer

Length: 402 bp
ATGGCGGGAGGATCTGAGAGGAAGACGATACTGGTGGGTTTGGTTCTAGCTCTTGTTCTTGGTATCGGTGTTTACTTAAGGCTTTGGACTATCGATTATACTCTATCTTCCGATGACACAGAGCGCTTAAGGAGACAGTTTGATTTGGCAAATAGAGAGGCAATGGATGAATCTGCAGATTGGCGGAGAATGTTTGATAAGGAAGCTGAGAAAGCTTCTAAATGTAACACAGAACTTTCACTGATCAAAGAGTCATCTGGGAATGGAAACACCTTTACCTCCAATCAAAAGCTAGAGTCATTAAAAAAGGAAAATGCGGCATTGCTCATTCAAATAGAGACATTAAAACAAGAGCTTGAAGCTTCACGGTTAAAGTGCCACTCACGGCAGGCACCCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.06

Weight (kDa)

7.75

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 391
AciI CCGC 3 cut(s) 5, 184, 317
AclWI GGATC 1 cut(s) 19
AfeI AGCGCT 1 cut(s) 125
AflII CTTAAG 2 cut(s) 76, 127
AgsI TTSAA 2 cut(s) 332, 359
AluBI AGCT 6 cut(s) 50, 206, 215, 292, 355, 362
AluI AGCT 6 cut(s) 50, 206, 215, 292, 355, 362
Alw26I GTCTC 2 cut(s) 127, 332
AlwI GGATC 1 cut(s) 19
Aor51HI AGCGCT 1 cut(s) 125
AspLEI GCGC 1 cut(s) 126
BanI GGYRCC 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 29
BclI TGATCA 1 cut(s) 243
BcoDI GTCTC 2 cut(s) 127, 332
BfaI CTAG 2 cut(s) 47, 293
BfmI CTRYAG 1 cut(s) 174
BfoI RGCGCY 1 cut(s) 127
BfrI CTTAAG 2 cut(s) 76, 127
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 29
Bsa29I ATCGAT 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 2 cut(s) 168, 320
BseCI ATCGAT 1 cut(s) 93
BseGI GGATG 1 cut(s) 172
BseMI GCAATG 2 cut(s) 168, 320
BseMII CTCAG 2 cut(s) 6, 198
BseNI ACTGG 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 391
BshVI ATCGAT 1 cut(s) 93
BsmAI GTCTC 2 cut(s) 127, 332
Bsp143I GATC 2 cut(s) 11, 243
BspACI CCGC 3 cut(s) 5, 184, 317
BspCNI CTCAG 2 cut(s) 7, 199
BspDI ATCGAT 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 393
BspMAI CTGCAG 1 cut(s) 178
BspPI GGATC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 391
BspTI CTTAAG 2 cut(s) 76, 127
BsrDI GCAATG 2 cut(s) 168, 320
BsrI ACTGG 1 cut(s) 36
BssMI GATC 2 cut(s) 11, 243
Bst4CI ACNGT 2 cut(s) 138, 369
BstAFI CTTAAG 2 cut(s) 76, 127
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 2 cut(s) 15, 207
BstF5I GGATG 1 cut(s) 172
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 14, 246
BstMAI GTCTC 2 cut(s) 127, 332
BstMBI GATC 2 cut(s) 11, 243
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 174
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
Bsu15I ATCGAT 1 cut(s) 93
BsuTUI ATCGAT 1 cut(s) 93
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 390
CfoI GCGC 1 cut(s) 126
ClaI ATCGAT 1 cut(s) 93
CviJI RGCY 7 cut(s) 50, 82, 206, 215, 292, 355, 362
CviKI_1 RGCY 7 cut(s) 50, 82, 206, 215, 292, 355, 362
DdeI CTNAG 2 cut(s) 15, 207
DpnI GATC 2 cut(s) 13, 245
DpnII GATC 2 cut(s) 11, 243
EciI GGCGGA 1 cut(s) 199
Eco47III AGCGCT 1 cut(s) 125
FaiI YATR 1 cut(s) 99
FbaI TGATCA 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 2 cut(s) 47, 293
GlaI GCGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 318
HaeII RGCGCY 1 cut(s) 127
HhaI GCGC 1 cut(s) 126
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HindIII AAGCTT 2 cut(s) 213, 360
HinfI GANTC 3 cut(s) 170, 251, 296
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 16, 112
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4III ACNGT 2 cut(s) 138, 369
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 2 cut(s) 15, 207
HspAI GCGC 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 2 cut(s) 11, 243
LpnPI CCDG 3 cut(s) 17, 243, 374
MaeI CTAG 2 cut(s) 47, 293
MaeIII GTNAC 1 cut(s) 224
MalI GATC 2 cut(s) 13, 245
MboI GATC 2 cut(s) 11, 243
MboII GAAGA 2 cut(s) 34, 99
MflI RGATCY 1 cut(s) 11
MlyI GAGTC 2 cut(s) 260, 305
MnlI CCTC 3 cut(s) 12, 151, 289
MseI TTAA 5 cut(s) 77, 128, 302, 344, 371
MspCI CTTAAG 2 cut(s) 76, 127
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 2 cut(s) 11, 243
NlaIV GGNNCC 1 cut(s) 393
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 2 cut(s) 259, 304
PpsI GAGTC 2 cut(s) 259, 304
PspN4I GGNNCC 1 cut(s) 393
PstI CTGCAG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 11
SaqAI TTAA 5 cut(s) 77, 128, 302, 344, 371
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 2 cut(s) 11, 243
SchI GAGTC 2 cut(s) 260, 305
SetI ASST 8 cut(s) 52, 208, 217, 275, 281, 294, 357, 364
SfcI CTRYAG 1 cut(s) 174
SmlI CTYRAG 2 cut(s) 76, 127
SmoI CTYRAG 2 cut(s) 76, 127
SsiI CCGC 3 cut(s) 5, 184, 317
SspMI CTAG 2 cut(s) 47, 293
TaaI ACNGT 2 cut(s) 138, 369
TaqI TCGA 1 cut(s) 93
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 5 cut(s) 77, 128, 302, 344, 371
Tru9I TTAA 5 cut(s) 77, 128, 302, 344, 371
TscAI CASTG 1 cut(s) 246
TspDTI ATGAA 1 cut(s) 183
TspRI CASTG 1 cut(s) 246
Vha464I CTTAAG 2 cut(s) 76, 127
XspI CTAG 2 cut(s) 47, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.