transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G37195 AT2G37195 |
| fragaria_vesca | FvH4_6g15910 FvH4_6g15910 FvH4_6g15910 |
| malus_domestica | MD04G1097300.v1.1 MD12G1118700.v1.1 |
| prunus_persica | Prupe.6G236600_v2.0.a1 Prupe.6G236600_v2.0.a1 Prupe.6G236600_v2.0.a1 |
| pyrus_communis | pycom04g09250 pycom12g11720 |
| rosa_chinensis | RchiOBHm_Chr3g0469601 |
| rosa_laevigata | RLG00000024333 |
| rosa_multiflora | Rmu_sc0041961.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00411720 |
| rosa_rugosa | Rorug03G0102800 |
| rosa_samantha | Rh3AG152200 Rh3BG176000 Rh3CG166900 Rh3DG199600 |
| rosa_wichuraiana | Rw3G014350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 75 |
| AciI | CCGC | 3 cut(s) | 82, 136, 282 |
| AclWI | GGATC | 1 cut(s) | 262 |
| AgsI | TTSAA | 3 cut(s) | 307, 355, 395 |
| AluBI | AGCT | 3 cut(s) | 127, 364, 379 |
| AluI | AGCT | 3 cut(s) | 127, 364, 379 |
| Alw21I | GWGCWC | 1 cut(s) | 129 |
| AlwI | GGATC | 1 cut(s) | 262 |
| AoxI | GGCC | 1 cut(s) | 327 |
| ApeKI | GCWGC | 1 cut(s) | 387 |
| AspS9I | GGNCC | 1 cut(s) | 90 |
| AsuHPI | GGTGA | 1 cut(s) | 281 |
| AvaII | GGWCC | 1 cut(s) | 90 |
| AxyI | CCTNAGG | 1 cut(s) | 131 |
| BanII | GRGCYC | 1 cut(s) | 129 |
| Bbv12I | GWGCWC | 1 cut(s) | 129 |
| BccI | CCATC | 2 cut(s) | 101, 266 |
| BceAI | ACGGC | 1 cut(s) | 56 |
| BfaI | CTAG | 1 cut(s) | 62 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 215 |
| BisI | GCNGC | 4 cut(s) | 83, 137, 282, 388 |
| BlsI | GCNGC | 4 cut(s) | 84, 138, 283, 389 |
| Bme18I | GGWCC | 1 cut(s) | 90 |
| BmgT120I | GGNCC | 1 cut(s) | 90 |
| BpuEI | CTTGAG | 1 cut(s) | 386 |
| Bse1I | ACTGG | 1 cut(s) | 39 |
| Bse21I | CCTNAGG | 1 cut(s) | 131 |
| Bse3DI | GCAATG | 1 cut(s) | 171 |
| BseGI | GGATG | 2 cut(s) | 175, 348 |
| BseMI | GCAATG | 1 cut(s) | 171 |
| BseMII | CTCAG | 3 cut(s) | 145, 171, 363 |
| BseNI | ACTGG | 1 cut(s) | 39 |
| BseRI | GAGGAG | 1 cut(s) | 119 |
| BshFI | GGCC | 1 cut(s) | 329 |
| BsiHKAI | GWGCWC | 1 cut(s) | 129 |
| BsnI | GGCC | 1 cut(s) | 329 |
| Bsp1286I | GDGCHC | 1 cut(s) | 129 |
| Bsp143I | GATC | 1 cut(s) | 254 |
| BspACI | CCGC | 3 cut(s) | 82, 136, 282 |
| BspANI | GGCC | 1 cut(s) | 329 |
| BspCNI | CTCAG | 3 cut(s) | 144, 172, 364 |
| BspPI | GGATC | 1 cut(s) | 262 |
| BsrDI | GCAATG | 1 cut(s) | 171 |
| BsrI | ACTGG | 1 cut(s) | 39 |
| BssMI | GATC | 1 cut(s) | 254 |
| Bst4CI | ACNGT | 1 cut(s) | 289 |
| BstDEI | CTNAG | 4 cut(s) | 131, 180, 331, 372 |
| BstF5I | GGATG | 2 cut(s) | 175, 348 |
| BstKTI | GATC | 1 cut(s) | 257 |
| BstMBI | GATC | 1 cut(s) | 254 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 133, 215 |
| Bsu36I | CCTNAGG | 1 cut(s) | 131 |
| BsuRI | GGCC | 1 cut(s) | 329 |
| BtsCI | GGATG | 2 cut(s) | 175, 348 |
| Cfr13I | GGNCC | 1 cut(s) | 90 |
| CviAII | CATG | 1 cut(s) | 55 |
| DdeI | CTNAG | 4 cut(s) | 131, 180, 331, 372 |
| DpnI | GATC | 1 cut(s) | 256 |
| DpnII | GATC | 1 cut(s) | 254 |
| Ecl136II | GAGCTC | 1 cut(s) | 127 |
| Eco24I | GRGCYC | 1 cut(s) | 129 |
| Eco47I | GGWCC | 1 cut(s) | 90 |
| Eco53kI | GAGCTC | 1 cut(s) | 127 |
| Eco81I | CCTNAGG | 1 cut(s) | 131 |
| EcoICRI | GAGCTC | 1 cut(s) | 127 |
| EcoT38I | GRGCYC | 1 cut(s) | 129 |
| FaeI | CATG | 1 cut(s) | 58 |
| FaiI | YATR | 4 cut(s) | 56, 88, 230, 326 |
| FatI | CATG | 1 cut(s) | 54 |
| FblI | GTMKAC | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 4 cut(s) | 83, 137, 282, 388 |
| FokI | GGATG | 2 cut(s) | 182, 355 |
| FriOI | GRGCYC | 1 cut(s) | 129 |
| Fsp4HI | GCNGC | 4 cut(s) | 83, 137, 282, 388 |
| FspBI | CTAG | 1 cut(s) | 62 |
| GluI | GCNGC | 4 cut(s) | 83, 137, 282, 388 |
| HaeIII | GGCC | 1 cut(s) | 329 |
| Hin1II | CATG | 1 cut(s) | 58 |
| HincII | GTYRAC | 1 cut(s) | 292 |
| HindII | GTYRAC | 1 cut(s) | 292 |
| HinfI | GANTC | 4 cut(s) | 66, 119, 173, 232 |
| HphI | GGTGA | 1 cut(s) | 281 |
| Hpy166II | GTNNAC | 2 cut(s) | 76, 292 |
| Hpy188I | TCNGA | 2 cut(s) | 115, 124 |
| Hpy8I | GTNNAC | 2 cut(s) | 76, 292 |
| HpyCH4III | ACNGT | 1 cut(s) | 289 |
| HpyCH4V | TGCA | 1 cut(s) | 387 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 133, 215 |
| HpyF3I | CTNAG | 4 cut(s) | 131, 180, 331, 372 |
| Hsp92II | CATG | 1 cut(s) | 58 |
| Kzo9I | GATC | 1 cut(s) | 254 |
| LmnI | GCTCC | 3 cut(s) | 21, 132, 361 |
| LpnPI | CCDG | 5 cut(s) | 20, 35, 118, 308, 344 |
| MaeI | CTAG | 1 cut(s) | 62 |
| MalI | GATC | 1 cut(s) | 256 |
| MboI | GATC | 1 cut(s) | 254 |
| MboII | GAAGA | 2 cut(s) | 102, 215 |
| MhlI | GDGCHC | 1 cut(s) | 129 |
| MluCI | AATT | 1 cut(s) | 299 |
| MnlI | CCTC | 5 cut(s) | 11, 140, 180, 259, 361 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 133, 215 |
| NdeII | GATC | 1 cut(s) | 254 |
| NlaIII | CATG | 1 cut(s) | 58 |
| PfeI | GAWTC | 4 cut(s) | 66, 119, 173, 232 |
| PkrI | GCNGC | 4 cut(s) | 84, 138, 283, 389 |
| Psp124BI | GAGCTC | 1 cut(s) | 129 |
| PspPI | GGNCC | 1 cut(s) | 90 |
| SacI | GAGCTC | 1 cut(s) | 129 |
| SatI | GCNGC | 4 cut(s) | 83, 137, 282, 388 |
| Sau3AI | GATC | 1 cut(s) | 254 |
| Sau96I | GGNCC | 1 cut(s) | 90 |
| SduI | GDGCHC | 1 cut(s) | 129 |
| SetI | ASST | 4 cut(s) | 129, 150, 366, 381 |
| SinI | GGWCC | 1 cut(s) | 90 |
| SmlI | CTYRAG | 1 cut(s) | 365 |
| SmoI | CTYRAG | 1 cut(s) | 365 |
| Sse9I | AATT | 1 cut(s) | 299 |
| SsiI | CCGC | 3 cut(s) | 82, 136, 282 |
| SspMI | CTAG | 1 cut(s) | 62 |
| SstI | GAGCTC | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 289 |
| TaqI | TCGA | 2 cut(s) | 96, 336 |
| TasI | AATT | 1 cut(s) | 299 |
| TauI | GCSGC | 3 cut(s) | 85, 139, 284 |
| TfiI | GAWTC | 4 cut(s) | 66, 119, 173, 232 |
| TseI | GCWGC | 1 cut(s) | 387 |
| TspDTI | ATGAA | 5 cut(s) | 132, 186, 216, 245, 359 |
| TspGWI | ACGGA | 1 cut(s) | 355 |
| VpaK11BI | GGWCC | 1 cut(s) | 90 |
| XmiI | GTMKAC | 1 cut(s) | 75 |
| XspI | CTAG | 1 cut(s) | 62 |