Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009407

Physical Location & Seq

Genomic Coordinates Forward (+)

9923618 .. 9926208

Gene Structure 2591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15910.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGACAGCAAAAACATAGGTGGGCTGAAAAGAAATGCCATAAAATTGTGGGCCGGGTATCCTGGTCTGTTTATGAGTTATCGGGGGCCCAGATTGGTACCCCGTTTGATTGTTTTTCAGCACAAAACCTTCCAGAAGGGACTCAATGGAGTCGAAGAGTCAAAATGAGGGGTGGTGGAGGAAACAAGAAAGTATTGTTGAGTTTTGTGATTTTGATGTTTCTGGGTATCGCGGTCTACTTCAGGCTTTGGACTATCGATTACAGAGTTTCGTCTGATGAAACCGAGCTCATAAGACGACAGTTTGACCTTGCGAATAGAGAAGCAATGGATGAATCAGCCGAGTGGAGGCTGAAATATGATGTAGAAGCAGAAAGATCTACCAAGTGTATGAACGAACTCAAACAGATAAAGGGATCTCTGGAGGAGGATGGAAATGCTACTAATATCAACCTGAAATTGGTGATGCAACAAAAGGAAAATGTTGCCTTGGCTGAACAAATTGAAGCCTTGAAACAAGAGCTTGAGACTGAAAAGCTGAAGTGCCGGTTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.41

Weight (kDa)

8.63

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37195 AT2G37195
fragaria_vesca	FvH4_6g15910 FvH4_6g15910 FvH4_6g15910
malus_domestica	MD04G1097300.v1.1 MD12G1118700.v1.1
prunus_persica	Prupe.6G236600_v2.0.a1 Prupe.6G236600_v2.0.a1 Prupe.6G236600_v2.0.a1
pyrus_communis	pycom04g09250 pycom12g11720
rosa_chinensis	RchiOBHm_Chr3g0469601
rosa_laevigata	RLG00000024333
rosa_multiflora	Rmu_sc0041961.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411720
rosa_rugosa	Rorug03G0102800
rosa_samantha	Rh3AG152200 Rh3BG176000 Rh3CG166900 Rh3DG199600
rosa_wichuraiana	Rw3G014350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	233
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	226
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	348, 460
AgsI	TTSAA	2 cut(s)	506, 514
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	3 cut(s)	289, 523, 538
AluI	AGCT	3 cut(s)	289, 523, 538
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	1 cut(s)	424
AoxI	GGCC	2 cut(s)	52, 87
ApaI	GGGCCC	1 cut(s)	91
Asp718I	GGTACC	1 cut(s)	98
AspS9I	GGNCC	3 cut(s)	52, 87, 88
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	98
BanII	GRGCYC	2 cut(s)	91, 291
Bbv12I	GWGCWC	1 cut(s)	291
BccI	CCATC	1 cut(s)	425
BciT130I	CCWGG	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	521
BfuI	GTATCC	1 cut(s)	70
BglII	AGATCT	1 cut(s)	377
Bme1390I	CCNGG	2 cut(s)	56, 64
BmgT120I	GGNCC	3 cut(s)	52, 87, 88
BmiI	GGNNCC	3 cut(s)	88, 89, 100
BmrFI	CCNGG	2 cut(s)	56, 64
BmsI	GCATC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 460
Bse118I	RCCGGY	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	64
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	2 cut(s)	337, 436
BseLI	CCNNNNNNNGG	2 cut(s)	348, 460
BseMI	GCAATG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	440
BseSI	GKGCMC	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	54, 89
BshNI	GGYRCC	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	2 cut(s)	55, 547
BslFI	GGGAC	2 cut(s)	18, 154
BslI	CCNNNNNNNGG	2 cut(s)	348, 460
BsmAI	GTCTC	1 cut(s)	521
BsmFI	GGGAC	2 cut(s)	18, 154
BsnI	GGCC	2 cut(s)	54, 89
Bsp120I	GGGCCC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	91, 291
Bsp143I	GATC	2 cut(s)	377, 416
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	2 cut(s)	54, 89
BspDI	ATCGAT	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	3 cut(s)	88, 89, 100
BspPI	GGATC	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	546
BssAI	RCCGGY	1 cut(s)	546
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	2 cut(s)	377, 416
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	337, 436
BstFNI	CGCG	1 cut(s)	233
BstKTI	GATC	2 cut(s)	380, 419
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	2 cut(s)	377, 416
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	54, 62
BstSLI	GKGCMC	1 cut(s)	91
BstUI	CGCG	1 cut(s)	233
BstX2I	RGATCY	2 cut(s)	377, 416
BstYI	RGATCY	2 cut(s)	377, 416
Bsu15I	ATCGAT	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	54, 89
BsuTUI	ATCGAT	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	337, 436
Cfr10I	RCCGGY	1 cut(s)	546
Cfr13I	GGNCC	3 cut(s)	52, 87, 88
ClaI	ATCGAT	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	99
CviQI	GTAC	1 cut(s)	99
DpnI	GATC	2 cut(s)	379, 418
DpnII	GATC	2 cut(s)	377, 416
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	2 cut(s)	91, 291
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	2 cut(s)	91, 291
ErhI	CCWWGG	1 cut(s)	489
FaiI	YATR	6 cut(s)	18, 42, 75, 293, 360, 392
FaqI	GGGAC	2 cut(s)	18, 154
FblI	GTMKAC	1 cut(s)	237
FokI	GGATG	2 cut(s)	344, 443
FriOI	GRGCYC	2 cut(s)	91, 291
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	54, 89
HapII	CCGG	2 cut(s)	55, 547
HinfI	GANTC	4 cut(s)	142, 151, 159, 335
HpaII	CCGG	2 cut(s)	55, 547
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	134, 422
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	131, 140
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4V	TGCA	2 cut(s)	469, 553
KpnI	GGTACC	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	377, 416
LpnPI	CCDG	9 cut(s)	49, 68, 76, 104, 147, 209, 229, 407, 467
LweI	GCATC	1 cut(s)	456
MalI	GATC	2 cut(s)	379, 418
MboI	GATC	2 cut(s)	377, 416
MboII	GAAGA	1 cut(s)	168
MflI	RGATCY	2 cut(s)	377, 416
MhlI	GDGCHC	2 cut(s)	91, 291
MluCI	AATT	3 cut(s)	45, 458, 501
MlyI	GAGTC	3 cut(s)	136, 160, 168
MnlI	CCTC	5 cut(s)	162, 173, 342, 418, 421
MspI	CCGG	2 cut(s)	55, 547
MspR9I	CCNGG	2 cut(s)	56, 64
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	233
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	377, 416
NlaIV	GGNNCC	3 cut(s)	88, 89, 100
NmeAIII	GCCGAG	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	335
PleI	GAGTC	3 cut(s)	136, 159, 167
PpsI	GAGTC	3 cut(s)	136, 159, 167
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	3 cut(s)	88, 89, 100
PspOMI	GGGCCC	1 cut(s)	87
PspPI	GGNCC	3 cut(s)	52, 87, 88
PsuI	RGATCY	2 cut(s)	377, 416
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	291
Sau3AI	GATC	2 cut(s)	377, 416
Sau96I	GGNCC	3 cut(s)	52, 87, 88
SchI	GAGTC	3 cut(s)	136, 160, 168
ScrFI	CCNGG	2 cut(s)	56, 64
SduI	GDGCHC	2 cut(s)	91, 291
SetI	ASST	7 cut(s)	23, 132, 291, 312, 456, 525, 540
SfaNI	GCATC	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	3 cut(s)	45, 458, 501
SsiI	CCGC	1 cut(s)	233
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	54, 62
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	154, 258
TasI	AATT	3 cut(s)	45, 458, 501
TfiI	GAWTC	1 cut(s)	335
TspDTI	ATGAA	3 cut(s)	294, 348, 407
XmiI	GTMKAC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.