Prupe.6G236600_v2.0.a1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0009407
Physical Location & Seq
Reverse (-)
23726922 .. 23729654
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G236600.3

Sequence Viewer

Length: 396 bp
ATGGGGGGTGGTGGTGGGAGCAAGAAAATATTGGTGGGTTTGGTGGTGCTGATGCTTTTTGGGGTTGCAGTGTACTTGAAGCTTTGGACCATCGACTATACCGTTTCTTCCGATGAAGCTGAGCTCTTGAGGCGGCAGTTCGACCTTGCTAATAGGGAAGCAATGGATGAATCTGCTGAGTGGAGGCTGAAATACGATGTAGAAGCAGAAAGGGCTACCAAGTGTATGAACGAACTCAAACAGATAAAGGGGTCTTTTGAGGAGGATGATGGAAATGCTGCTAGCCTCAACCAGAAATTGGTGAATCTACAAAAGGAAAATATGGCCTTGGTTGAACGGATGGAAGCCATGAAACAAGAGCTTGAGGCTGAGAAGCTGAAGTGCAGCTTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.79

Weight (kDa)

4.91

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 298
AciI CCGC 1 cut(s) 133
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 2 cut(s) 79, 335
AluBI AGCT 6 cut(s) 82, 119, 124, 361, 376, 387
AluI AGCT 6 cut(s) 82, 119, 124, 361, 376, 387
Alw21I GWGCWC 1 cut(s) 126
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 2 cut(s) 278, 384
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 313
AsuNHI GCTAGC 1 cut(s) 281
AvaII GGWCC 1 cut(s) 87
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 265
BccI CCATC 3 cut(s) 98, 263, 334
BfaI CTAG 1 cut(s) 282
BisI GCNGC 3 cut(s) 134, 279, 385
BlpI GCTNAGC 1 cut(s) 120
BlsI GCNGC 3 cut(s) 135, 280, 386
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmsI GCATC 1 cut(s) 42
BmtI GCTAGC 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 120
BpuEI CTTGAG 2 cut(s) 148, 383
BsaJI CCNNGG 1 cut(s) 327
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 3 cut(s) 172, 271, 345
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 3 cut(s) 111, 168, 360
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 265
BshFI GGCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 298
BsnI GGCC 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 126
Bsp1720I GCTNAGC 1 cut(s) 120
BspACI CCGC 1 cut(s) 133
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 3 cut(s) 112, 169, 361
BspOI GCTAGC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 103
BstC8I GCNNGC 2 cut(s) 283, 389
BstDEI CTNAG 3 cut(s) 120, 177, 369
BstF5I GGATG 3 cut(s) 172, 271, 345
BstMWI GCNNNNNNNGC 2 cut(s) 130, 212
BstV1I GCAGC 1 cut(s) 265
BsuRI GGCC 1 cut(s) 326
BtsCI GGATG 3 cut(s) 172, 271, 345
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 283, 389
Cfr13I GGNCC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 349
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 3 cut(s) 120, 177, 369
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 1 cut(s) 352
FaiI YATR 4 cut(s) 99, 227, 323, 350
FalI AAGNNNNNCTT 1 cut(s) 371
FatI CATG 1 cut(s) 348
Fnu4HI GCNGC 3 cut(s) 134, 279, 385
FokI GGATG 3 cut(s) 179, 278, 352
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 3 cut(s) 134, 279, 385
FspBI CTAG 1 cut(s) 282
GluI GCNGC 3 cut(s) 134, 279, 385
HaeIII GGCC 1 cut(s) 326
Hin1II CATG 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 2 cut(s) 170, 304
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 3 cut(s) 68, 384, 391
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 212
HpyF3I CTNAG 3 cut(s) 120, 177, 369
Hsp92II CATG 1 cut(s) 352
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 1 cut(s) 305
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 282
MboII GAAGA 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 1 cut(s) 296
MnlI CCTC 6 cut(s) 123, 177, 253, 256, 296, 358
MwoI GCNNNNNNNGC 2 cut(s) 130, 212
NheI GCTAGC 1 cut(s) 281
NlaIII CATG 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 2 cut(s) 170, 304
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 3 cut(s) 135, 280, 386
Psp124BI GAGCTC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 87
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SacI GAGCTC 1 cut(s) 126
SatI GCNGC 3 cut(s) 134, 279, 385
Sau96I GGNCC 1 cut(s) 87
SduI GDGCHC 1 cut(s) 126
SetI ASST 7 cut(s) 84, 121, 126, 147, 363, 378, 389
SfaNI GCATC 1 cut(s) 42
SinI GGWCC 1 cut(s) 87
SmlI CTYRAG 2 cut(s) 127, 362
SmoI CTYRAG 2 cut(s) 127, 362
Sse9I AATT 1 cut(s) 296
SsiI CCGC 1 cut(s) 133
SspI AATATT 1 cut(s) 30
SspMI CTAG 1 cut(s) 282
SstI GAGCTC 1 cut(s) 126
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 93, 141
TasI AATT 1 cut(s) 296
TatI WGTACW 1 cut(s) 72
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 2 cut(s) 170, 304
TscAI CASTG 1 cut(s) 75
TseI GCWGC 2 cut(s) 278, 384
TspDTI ATGAA 4 cut(s) 129, 183, 242, 365
TspGWI ACGGA 1 cut(s) 352
TspRI CASTG 1 cut(s) 75
Van91I CCANNNNNTGG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 87
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.