transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G37195 AT2G37195 |
| fragaria_vesca | FvH4_6g15910 FvH4_6g15910 FvH4_6g15910 |
| malus_domestica | MD04G1097300.v1.1 MD12G1118700.v1.1 |
| prunus_persica | Prupe.6G236600_v2.0.a1 Prupe.6G236600_v2.0.a1 Prupe.6G236600_v2.0.a1 |
| pyrus_communis | pycom04g09250 pycom12g11720 |
| rosa_chinensis | RchiOBHm_Chr3g0469601 |
| rosa_laevigata | RLG00000024333 |
| rosa_multiflora | Rmu_sc0041961.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00411720 |
| rosa_rugosa | Rorug03G0102800 |
| rosa_samantha | Rh3AG152200 Rh3BG176000 Rh3CG166900 Rh3DG199600 |
| rosa_wichuraiana | Rw3G014350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 72, 215 |
| AccII | CGCG | 1 cut(s) | 68 |
| AciI | CCGC | 1 cut(s) | 68 |
| AcsI | RAATTY | 1 cut(s) | 287 |
| AfaI | GTAC | 1 cut(s) | 268 |
| AluBI | AGCT | 2 cut(s) | 124, 318 |
| AluI | AGCT | 2 cut(s) | 124, 318 |
| Alw21I | GWGCWC | 1 cut(s) | 126 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 255 |
| ApoI | RAATTY | 1 cut(s) | 287 |
| AspS9I | GGNCC | 1 cut(s) | 87 |
| AvaII | GGWCC | 1 cut(s) | 87 |
| BanII | GRGCYC | 1 cut(s) | 126 |
| Bbv12I | GWGCWC | 1 cut(s) | 126 |
| BccI | CCATC | 1 cut(s) | 98 |
| BfmI | CTRYAG | 1 cut(s) | 247 |
| Bme18I | GGWCC | 1 cut(s) | 87 |
| BmgT120I | GGNCC | 1 cut(s) | 87 |
| Bsa29I | ATCGAT | 1 cut(s) | 93 |
| Bse3DI | GCAATG | 1 cut(s) | 168 |
| BseCI | ATCGAT | 1 cut(s) | 93 |
| BseGI | GGATG | 1 cut(s) | 172 |
| BseMI | GCAATG | 1 cut(s) | 168 |
| BseMII | CTCAG | 1 cut(s) | 168 |
| BsgI | GTGCAG | 1 cut(s) | 241 |
| Bsh1236I | CGCG | 1 cut(s) | 68 |
| BshVI | ATCGAT | 1 cut(s) | 93 |
| BsiHKAI | GWGCWC | 1 cut(s) | 126 |
| Bsp1286I | GDGCHC | 1 cut(s) | 126 |
| BspACI | CCGC | 1 cut(s) | 68 |
| BspCNI | CTCAG | 1 cut(s) | 169 |
| BspDI | ATCGAT | 1 cut(s) | 93 |
| BspFNI | CGCG | 1 cut(s) | 68 |
| BspMAI | CTGCAG | 1 cut(s) | 251 |
| BsrDI | GCAATG | 1 cut(s) | 168 |
| Bst4CI | ACNGT | 1 cut(s) | 138 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 255 |
| BstDEI | CTNAG | 1 cut(s) | 177 |
| BstF5I | GGATG | 1 cut(s) | 172 |
| BstFNI | CGCG | 1 cut(s) | 68 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 255 |
| BstSFI | CTRYAG | 1 cut(s) | 247 |
| BstUI | CGCG | 1 cut(s) | 68 |
| Bsu15I | ATCGAT | 1 cut(s) | 93 |
| BsuTUI | ATCGAT | 1 cut(s) | 93 |
| BtsCI | GGATG | 1 cut(s) | 172 |
| CaiI | CAGNNNCTG | 1 cut(s) | 255 |
| Cfr13I | GGNCC | 1 cut(s) | 87 |
| ClaI | ATCGAT | 1 cut(s) | 93 |
| Csp6I | GTAC | 1 cut(s) | 267 |
| CviJI | RGCY | 4 cut(s) | 82, 124, 187, 318 |
| CviKI_1 | RGCY | 4 cut(s) | 82, 124, 187, 318 |
| CviQI | GTAC | 1 cut(s) | 267 |
| DdeI | CTNAG | 1 cut(s) | 177 |
| DraI | TTTAAA | 1 cut(s) | 286 |
| Ecl136II | GAGCTC | 1 cut(s) | 124 |
| Eco24I | GRGCYC | 1 cut(s) | 126 |
| Eco47I | GGWCC | 1 cut(s) | 87 |
| Eco53kI | GAGCTC | 1 cut(s) | 124 |
| EcoICRI | GAGCTC | 1 cut(s) | 124 |
| EcoT38I | GRGCYC | 1 cut(s) | 126 |
| FaiI | YATR | 7 cut(s) | 128, 195, 227, 263, 265, 272, 298 |
| FauNDI | CATATG | 1 cut(s) | 263 |
| FblI | GTMKAC | 2 cut(s) | 72, 215 |
| FokI | GGATG | 1 cut(s) | 179 |
| FriOI | GRGCYC | 1 cut(s) | 126 |
| HinfI | GANTC | 3 cut(s) | 63, 170, 252 |
| Hpy166II | GTNNAC | 2 cut(s) | 73, 216 |
| Hpy188I | TCNGA | 2 cut(s) | 112, 315 |
| Hpy8I | GTNNAC | 2 cut(s) | 73, 216 |
| HpyCH4III | ACNGT | 1 cut(s) | 138 |
| HpyCH4V | TGCA | 2 cut(s) | 249, 258 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 255 |
| HpyF3I | CTNAG | 1 cut(s) | 177 |
| LpnPI | CCDG | 2 cut(s) | 44, 227 |
| MboII | GAAGA | 1 cut(s) | 99 |
| MhlI | GDGCHC | 1 cut(s) | 126 |
| MluCI | AATT | 1 cut(s) | 287 |
| MlyI | GAGTC | 1 cut(s) | 246 |
| MnlI | CCTC | 3 cut(s) | 8, 151, 177 |
| MseI | TTAA | 1 cut(s) | 285 |
| MvnI | CGCG | 1 cut(s) | 68 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 255 |
| NdeI | CATATG | 1 cut(s) | 263 |
| PfeI | GAWTC | 2 cut(s) | 63, 170 |
| PleI | GAGTC | 1 cut(s) | 246 |
| PpsI | GAGTC | 1 cut(s) | 246 |
| Psp124BI | GAGCTC | 1 cut(s) | 126 |
| PspPI | GGNCC | 1 cut(s) | 87 |
| PstI | CTGCAG | 1 cut(s) | 251 |
| PstNI | CAGNNNCTG | 1 cut(s) | 255 |
| RsaI | GTAC | 1 cut(s) | 268 |
| RsaNI | GTAC | 1 cut(s) | 267 |
| SacI | GAGCTC | 1 cut(s) | 126 |
| SaqAI | TTAA | 1 cut(s) | 285 |
| Sau96I | GGNCC | 1 cut(s) | 87 |
| SchI | GAGTC | 1 cut(s) | 246 |
| SduI | GDGCHC | 1 cut(s) | 126 |
| SetI | ASST | 5 cut(s) | 126, 147, 215, 246, 320 |
| SfcI | CTRYAG | 1 cut(s) | 247 |
| SgeI | CNNG | 8 cut(s) | 34, 48, 71, 79, 133, 158, 232, 254 |
| SinI | GGWCC | 1 cut(s) | 87 |
| Sse9I | AATT | 1 cut(s) | 287 |
| SsiI | CCGC | 1 cut(s) | 68 |
| SstI | GAGCTC | 1 cut(s) | 126 |
| TaaI | ACNGT | 1 cut(s) | 138 |
| TaqI | TCGA | 1 cut(s) | 93 |
| TasI | AATT | 1 cut(s) | 287 |
| TatI | WGTACW | 1 cut(s) | 266 |
| TfiI | GAWTC | 2 cut(s) | 63, 170 |
| Tru1I | TTAA | 1 cut(s) | 285 |
| Tru9I | TTAA | 1 cut(s) | 285 |
| TspDTI | ATGAA | 3 cut(s) | 129, 183, 242 |
| VpaK11BI | GGWCC | 1 cut(s) | 87 |
| XapI | RAATTY | 1 cut(s) | 287 |
| XmiI | GTMKAC | 2 cut(s) | 72, 215 |