transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G37195 AT2G37195 |
| fragaria_vesca | FvH4_6g15910 FvH4_6g15910 FvH4_6g15910 |
| malus_domestica | MD04G1097300.v1.1 MD12G1118700.v1.1 |
| prunus_persica | Prupe.6G236600_v2.0.a1 Prupe.6G236600_v2.0.a1 Prupe.6G236600_v2.0.a1 |
| pyrus_communis | pycom04g09250 pycom12g11720 |
| rosa_chinensis | RchiOBHm_Chr3g0469601 |
| rosa_laevigata | RLG00000024333 |
| rosa_multiflora | Rmu_sc0041961.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00411720 |
| rosa_rugosa | Rorug03G0102800 |
| rosa_samantha | Rh3AG152200 Rh3BG176000 Rh3CG166900 Rh3DG199600 |
| rosa_wichuraiana | Rw3G014350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 75, 291 |
| AciI | CCGC | 3 cut(s) | 9, 82, 136 |
| AfaI | GTAC | 1 cut(s) | 33 |
| AgsI | TTSAA | 2 cut(s) | 307, 355 |
| AluBI | AGCT | 2 cut(s) | 364, 379 |
| AluI | AGCT | 2 cut(s) | 364, 379 |
| AoxI | GGCC | 1 cut(s) | 327 |
| ApeKI | GCWGC | 2 cut(s) | 281, 387 |
| AspS9I | GGNCC | 1 cut(s) | 90 |
| AsuHPI | GGTGA | 1 cut(s) | 281 |
| AvaII | GGWCC | 1 cut(s) | 90 |
| AxyI | CCTNAGG | 1 cut(s) | 131 |
| BbvI | GCAGC | 1 cut(s) | 268 |
| BccI | CCATC | 3 cut(s) | 101, 266, 337 |
| BceAI | ACGGC | 1 cut(s) | 56 |
| BfaI | CTAG | 1 cut(s) | 62 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 215 |
| BisI | GCNGC | 4 cut(s) | 83, 137, 282, 388 |
| BlsI | GCNGC | 4 cut(s) | 84, 138, 283, 389 |
| BmcAI | AGTACT | 1 cut(s) | 33 |
| Bme18I | GGWCC | 1 cut(s) | 90 |
| BmgT120I | GGNCC | 1 cut(s) | 90 |
| BpuEI | CTTGAG | 1 cut(s) | 386 |
| BsaJI | CCNNGG | 1 cut(s) | 330 |
| Bse1I | ACTGG | 1 cut(s) | 39 |
| Bse21I | CCTNAGG | 1 cut(s) | 131 |
| Bse3DI | GCAATG | 1 cut(s) | 171 |
| BseDI | CCNNGG | 1 cut(s) | 330 |
| BseGI | GGATG | 2 cut(s) | 175, 348 |
| BseMI | GCAATG | 1 cut(s) | 171 |
| BseMII | CTCAG | 3 cut(s) | 145, 171, 363 |
| BseNI | ACTGG | 1 cut(s) | 39 |
| BseRI | GAGGAG | 1 cut(s) | 119 |
| BseXI | GCAGC | 1 cut(s) | 268 |
| BshFI | GGCC | 1 cut(s) | 329 |
| BsnI | GGCC | 1 cut(s) | 329 |
| BspACI | CCGC | 3 cut(s) | 9, 82, 136 |
| BspANI | GGCC | 1 cut(s) | 329 |
| BspCNI | CTCAG | 3 cut(s) | 144, 172, 364 |
| BsrDI | GCAATG | 1 cut(s) | 171 |
| BsrI | ACTGG | 1 cut(s) | 39 |
| BssECI | CCNNGG | 1 cut(s) | 330 |
| BssT1I | CCWWGG | 1 cut(s) | 330 |
| BstDEI | CTNAG | 3 cut(s) | 131, 180, 372 |
| BstF5I | GGATG | 2 cut(s) | 175, 348 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 215 |
| BstV1I | GCAGC | 1 cut(s) | 268 |
| Bsu36I | CCTNAGG | 1 cut(s) | 131 |
| BsuRI | GGCC | 1 cut(s) | 329 |
| BtsCI | GGATG | 2 cut(s) | 175, 348 |
| Cfr13I | GGNCC | 1 cut(s) | 90 |
| Csp6I | GTAC | 1 cut(s) | 32 |
| CviAII | CATG | 1 cut(s) | 55 |
| CviQI | GTAC | 1 cut(s) | 32 |
| DdeI | CTNAG | 3 cut(s) | 131, 180, 372 |
| EciI | GGCGGA | 1 cut(s) | 24 |
| Eco130I | CCWWGG | 1 cut(s) | 330 |
| Eco47I | GGWCC | 1 cut(s) | 90 |
| Eco81I | CCTNAGG | 1 cut(s) | 131 |
| EcoT14I | CCWWGG | 1 cut(s) | 330 |
| ErhI | CCWWGG | 1 cut(s) | 330 |
| FaeI | CATG | 1 cut(s) | 58 |
| FaiI | YATR | 3 cut(s) | 56, 230, 326 |
| FatI | CATG | 1 cut(s) | 54 |
| FblI | GTMKAC | 2 cut(s) | 75, 291 |
| Fnu4HI | GCNGC | 4 cut(s) | 83, 137, 282, 388 |
| FokI | GGATG | 2 cut(s) | 182, 355 |
| Fsp4HI | GCNGC | 4 cut(s) | 83, 137, 282, 388 |
| FspBI | CTAG | 1 cut(s) | 62 |
| GluI | GCNGC | 4 cut(s) | 83, 137, 282, 388 |
| HaeIII | GGCC | 1 cut(s) | 329 |
| Hin1II | CATG | 1 cut(s) | 58 |
| HincII | GTYRAC | 1 cut(s) | 292 |
| HindII | GTYRAC | 1 cut(s) | 292 |
| HinfI | GANTC | 3 cut(s) | 173, 232, 307 |
| HphI | GGTGA | 1 cut(s) | 281 |
| Hpy166II | GTNNAC | 2 cut(s) | 76, 292 |
| Hpy188I | TCNGA | 1 cut(s) | 115 |
| Hpy8I | GTNNAC | 2 cut(s) | 76, 292 |
| Hpy99I | CGWCG | 2 cut(s) | 119, 293 |
| HpyCH4IV | ACGT | 1 cut(s) | 288 |
| HpyCH4V | TGCA | 1 cut(s) | 387 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 215 |
| HpyF3I | CTNAG | 3 cut(s) | 131, 180, 372 |
| HpySE526I | ACGT | 1 cut(s) | 288 |
| Hsp92II | CATG | 1 cut(s) | 58 |
| LmnI | GCTCC | 2 cut(s) | 21, 361 |
| LpnPI | CCDG | 5 cut(s) | 20, 35, 118, 308, 344 |
| Lsp1109I | GCAGC | 1 cut(s) | 268 |
| MaeI | CTAG | 1 cut(s) | 62 |
| MaeII | ACGT | 1 cut(s) | 288 |
| MboII | GAAGA | 2 cut(s) | 102, 215 |
| MfeI | CAATTG | 1 cut(s) | 223 |
| MluCI | AATT | 3 cut(s) | 66, 223, 299 |
| MmeI | TCCRAC | 1 cut(s) | 138 |
| MnlI | CCTC | 7 cut(s) | 5, 11, 137, 140, 180, 259, 361 |
| MunI | CAATTG | 1 cut(s) | 223 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 215 |
| NlaIII | CATG | 1 cut(s) | 58 |
| PfeI | GAWTC | 3 cut(s) | 173, 232, 307 |
| PkrI | GCNGC | 4 cut(s) | 84, 138, 283, 389 |
| PspPI | GGNCC | 1 cut(s) | 90 |
| RsaI | GTAC | 1 cut(s) | 33 |
| RsaNI | GTAC | 1 cut(s) | 32 |
| SalI | GTCGAC | 1 cut(s) | 290 |
| SatI | GCNGC | 4 cut(s) | 83, 137, 282, 388 |
| Sau96I | GGNCC | 1 cut(s) | 90 |
| ScaI | AGTACT | 1 cut(s) | 33 |
| SetI | ASST | 6 cut(s) | 16, 129, 150, 291, 366, 381 |
| SinI | GGWCC | 1 cut(s) | 90 |
| SmlI | CTYRAG | 1 cut(s) | 365 |
| SmoI | CTYRAG | 1 cut(s) | 365 |
| Sse9I | AATT | 3 cut(s) | 66, 223, 299 |
| SsiI | CCGC | 3 cut(s) | 9, 82, 136 |
| SspMI | CTAG | 1 cut(s) | 62 |
| StyI | CCWWGG | 1 cut(s) | 330 |
| TaiI | ACGT | 1 cut(s) | 291 |
| TaqI | TCGA | 3 cut(s) | 96, 144, 291 |
| TasI | AATT | 3 cut(s) | 66, 223, 299 |
| TatI | WGTACW | 1 cut(s) | 31 |
| TauI | GCSGC | 2 cut(s) | 85, 139 |
| TfiI | GAWTC | 3 cut(s) | 173, 232, 307 |
| TseI | GCWGC | 2 cut(s) | 281, 387 |
| TspDTI | ATGAA | 3 cut(s) | 186, 216, 245 |
| TspGWI | ACGGA | 1 cut(s) | 355 |
| VpaK11BI | GGWCC | 1 cut(s) | 90 |
| XmiI | GTMKAC | 2 cut(s) | 75, 291 |
| XspI | CTAG | 1 cut(s) | 62 |
| ZrmI | AGTACT | 1 cut(s) | 33 |