transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G37195 AT2G37195 |
| fragaria_vesca | FvH4_6g15910 FvH4_6g15910 FvH4_6g15910 |
| malus_domestica | MD04G1097300.v1.1 MD12G1118700.v1.1 |
| prunus_persica | Prupe.6G236600_v2.0.a1 Prupe.6G236600_v2.0.a1 Prupe.6G236600_v2.0.a1 |
| pyrus_communis | pycom04g09250 pycom12g11720 |
| rosa_chinensis | RchiOBHm_Chr3g0469601 |
| rosa_laevigata | RLG00000024333 |
| rosa_multiflora | Rmu_sc0041961.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00411720 |
| rosa_rugosa | Rorug03G0102800 |
| rosa_samantha | Rh3AG152200 Rh3BG176000 Rh3CG166900 Rh3DG199600 |
| rosa_wichuraiana | Rw3G014350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 295 |
| AccI | GTMKAC | 2 cut(s) | 72, 215 |
| AccII | CGCG | 2 cut(s) | 68, 323 |
| AciI | CCGC | 1 cut(s) | 68 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 295 |
| AgsI | TTSAA | 2 cut(s) | 332, 349 |
| AluBI | AGCT | 4 cut(s) | 124, 358, 373, 384 |
| AluI | AGCT | 4 cut(s) | 124, 358, 373, 384 |
| Alw21I | GWGCWC | 1 cut(s) | 126 |
| ApeKI | GCWGC | 2 cut(s) | 275, 381 |
| AspS9I | GGNCC | 1 cut(s) | 87 |
| AsuHPI | GGTGA | 1 cut(s) | 310 |
| AvaII | GGWCC | 1 cut(s) | 87 |
| BanII | GRGCYC | 2 cut(s) | 126, 254 |
| Bbv12I | GWGCWC | 1 cut(s) | 126 |
| BbvI | GCAGC | 1 cut(s) | 262 |
| BccI | CCATC | 2 cut(s) | 98, 260 |
| BisI | GCNGC | 2 cut(s) | 276, 382 |
| BlsI | GCNGC | 2 cut(s) | 277, 383 |
| Bme18I | GGWCC | 1 cut(s) | 87 |
| BmgT120I | GGNCC | 1 cut(s) | 87 |
| BmsI | GCATC | 1 cut(s) | 291 |
| BpuEI | CTTGAG | 2 cut(s) | 278, 380 |
| Bsa29I | ATCGAT | 1 cut(s) | 93 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 295 |
| Bse3DI | GCAATG | 1 cut(s) | 168 |
| BseCI | ATCGAT | 1 cut(s) | 93 |
| BseGI | GGATG | 2 cut(s) | 172, 271 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 295 |
| BseMI | GCAATG | 1 cut(s) | 168 |
| BseMII | CTCAG | 1 cut(s) | 168 |
| BseRI | GAGGAG | 1 cut(s) | 275 |
| BseXI | GCAGC | 1 cut(s) | 262 |
| Bsh1236I | CGCG | 2 cut(s) | 68, 323 |
| BshVI | ATCGAT | 1 cut(s) | 93 |
| BsiHKAI | GWGCWC | 1 cut(s) | 126 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 295 |
| Bsp1286I | GDGCHC | 2 cut(s) | 126, 254 |
| BspACI | CCGC | 1 cut(s) | 68 |
| BspCNI | CTCAG | 1 cut(s) | 169 |
| BspDI | ATCGAT | 1 cut(s) | 93 |
| BspFNI | CGCG | 2 cut(s) | 68, 323 |
| BsrDI | GCAATG | 1 cut(s) | 168 |
| Bst4CI | ACNGT | 1 cut(s) | 138 |
| BstC8I | GCNNGC | 1 cut(s) | 386 |
| BstDEI | CTNAG | 1 cut(s) | 177 |
| BstF5I | GGATG | 2 cut(s) | 172, 271 |
| BstFNI | CGCG | 2 cut(s) | 68, 323 |
| BstUI | CGCG | 2 cut(s) | 68, 323 |
| BstV1I | GCAGC | 1 cut(s) | 262 |
| Bsu15I | ATCGAT | 1 cut(s) | 93 |
| BsuTUI | ATCGAT | 1 cut(s) | 93 |
| BtsCI | GGATG | 2 cut(s) | 172, 271 |
| Cac8I | GCNNGC | 1 cut(s) | 386 |
| Cfr13I | GGNCC | 1 cut(s) | 87 |
| ClaI | ATCGAT | 1 cut(s) | 93 |
| CviJI | RGCY | 9 cut(s) | 82, 124, 187, 252, 344, 358, 365, 373, 384 |
| CviKI_1 | RGCY | 9 cut(s) | 82, 124, 187, 252, 344, 358, 365, 373, 384 |
| DdeI | CTNAG | 1 cut(s) | 177 |
| Ecl136II | GAGCTC | 1 cut(s) | 124 |
| Eco24I | GRGCYC | 2 cut(s) | 126, 254 |
| Eco47I | GGWCC | 1 cut(s) | 87 |
| Eco53kI | GAGCTC | 1 cut(s) | 124 |
| EcoICRI | GAGCTC | 1 cut(s) | 124 |
| EcoT38I | GRGCYC | 2 cut(s) | 126, 254 |
| FaiI | YATR | 4 cut(s) | 99, 128, 195, 227 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 368 |
| FblI | GTMKAC | 2 cut(s) | 72, 215 |
| Fnu4HI | GCNGC | 2 cut(s) | 276, 382 |
| FokI | GGATG | 2 cut(s) | 179, 278 |
| FriOI | GRGCYC | 2 cut(s) | 126, 254 |
| Fsp4HI | GCNGC | 2 cut(s) | 276, 382 |
| GluI | GCNGC | 2 cut(s) | 276, 382 |
| HinfI | GANTC | 2 cut(s) | 63, 170 |
| HphI | GGTGA | 1 cut(s) | 310 |
| Hpy166II | GTNNAC | 2 cut(s) | 73, 216 |
| Hpy188I | TCNGA | 1 cut(s) | 112 |
| Hpy188III | TCNNGA | 1 cut(s) | 257 |
| Hpy8I | GTNNAC | 2 cut(s) | 73, 216 |
| HpyAV | CCTTC | 1 cut(s) | 241 |
| HpyCH4III | ACNGT | 1 cut(s) | 138 |
| HpyCH4V | TGCA | 2 cut(s) | 381, 388 |
| HpyF3I | CTNAG | 1 cut(s) | 177 |
| LpnPI | CCDG | 2 cut(s) | 44, 302 |
| Lsp1109I | GCAGC | 1 cut(s) | 262 |
| LweI | GCATC | 1 cut(s) | 291 |
| MboII | GAAGA | 1 cut(s) | 99 |
| MhlI | GDGCHC | 2 cut(s) | 126, 254 |
| MluCI | AATT | 1 cut(s) | 293 |
| MnlI | CCTC | 6 cut(s) | 8, 151, 177, 253, 256, 355 |
| MvnI | CGCG | 2 cut(s) | 68, 323 |
| PfeI | GAWTC | 2 cut(s) | 63, 170 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 295 |
| PkrI | GCNGC | 2 cut(s) | 277, 383 |
| Psp124BI | GAGCTC | 1 cut(s) | 126 |
| PspPI | GGNCC | 1 cut(s) | 87 |
| SacI | GAGCTC | 1 cut(s) | 126 |
| SatI | GCNGC | 2 cut(s) | 276, 382 |
| Sau96I | GGNCC | 1 cut(s) | 87 |
| SduI | GDGCHC | 2 cut(s) | 126, 254 |
| SetI | ASST | 6 cut(s) | 126, 147, 215, 360, 375, 386 |
| SfaNI | GCATC | 1 cut(s) | 291 |
| SinI | GGWCC | 1 cut(s) | 87 |
| SmlI | CTYRAG | 2 cut(s) | 257, 359 |
| SmoI | CTYRAG | 2 cut(s) | 257, 359 |
| Sse9I | AATT | 1 cut(s) | 293 |
| SsiI | CCGC | 1 cut(s) | 68 |
| SstI | GAGCTC | 1 cut(s) | 126 |
| TaaI | ACNGT | 1 cut(s) | 138 |
| TaqI | TCGA | 1 cut(s) | 93 |
| TasI | AATT | 1 cut(s) | 293 |
| TfiI | GAWTC | 2 cut(s) | 63, 170 |
| TseI | GCWGC | 2 cut(s) | 275, 381 |
| TspDTI | ATGAA | 4 cut(s) | 129, 183, 242, 260 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 295 |
| VpaK11BI | GGWCC | 1 cut(s) | 87 |
| XmiI | GTMKAC | 2 cut(s) | 72, 215 |