AT2G37210
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
15623928 .. 15627032
3105 bp
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UTR
Exon/CDS
Intron
AT2G37210.2

Sequence Viewer

Length: 648 bp
ATGGAAATCAAAGGTGAATCGATGCAAAAGTCAAAGTTCAGAAGAATCTGTGTCTTCTGTGGAAGCAGCCAAGGCAAGAAGAGCAGTTACCAAGATGCTGCTGTTGACCTCGGCAACGAACTGGTTTCAAGGAATATTGATCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTGTTCATGATGGTGGTCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCTAGAGAGTTGACTGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGATATGCACCAAAGGAAAGCTGAGATGGCTAAGCACTCTGATGCTTTTATTGCCTTACCAGGTGGTTATGGAACACTTGAAGAATTGCTTGAAGTCATAACTTGGGCTCAGCTTGGTATACATGACAAGCCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTCTGCTCTCATTCATTGACAAAGCAGTCGAAGAAGGATTTATTAGCCCGACTGCTCGTGAGATCATCGTCTCCGCACCTACTGCTAAAGAGCTGGTGAAAAAGCTAGAGGAATATGCACCTTGCCATGAAAGGGTTGCAACGAAGCTTTGTTGGGAGATGGAACGGATTGGTTACTCCTCTGAAGAGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

215

Amino Acids

23.56

Weight (kDa)

5.59

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 21 - 117 1.4e-08 SLOG cluster4 family
Lysine_decarbox PF03641 58 - 117 4e-16 Possible lysine decarboxylase
Lysine_decarbox PF03641 142 - 212 1.5e-24 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013801)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37210 AT2G37210 AT3G53450
fragaria_vesca FvH4_6g16020
malus_domestica MD04G1096700.v1.1 MD12G1117700.v1.1
prunus_persica Prupe.6G236000_v2.0.a1 Prupe.6G236000_v2.0.a1
pyrus_communis pycom04g09180 pycom12g11650
rosa_chinensis RchiOBHm_Chr3g0469741
rosa_laevigata RLG00000024325
rosa_multiflora Rmu_sc0010644.1_g000003
rosa_roxburghii Rroxscaffold_6G00411510
rosa_rugosa Rorug03G0103900
rosa_samantha Rh3AG153300
rosa_wichuraiana Rw3G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 482
AccI GTMKAC 1 cut(s) 409
AciI CCGC 1 cut(s) 531
AfiI CCNNNNNNNGG 1 cut(s) 589
AgsI TTSAA 3 cut(s) 129, 371, 383
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 6 cut(s) 191, 311, 403, 550, 562, 604
AluI AGCT 6 cut(s) 191, 311, 403, 550, 562, 604
Alw26I GTCTC 1 cut(s) 532
ApeKI GCWGC 2 cut(s) 66, 98
AsuHPI GGTGA 3 cut(s) 26, 272, 565
BanII GRGCYC 1 cut(s) 400
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BauI CACGAG 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 46
BbvI GCAGC 2 cut(s) 78, 85
BccI CCATC 5 cut(s) 166, 194, 310, 437, 610
BciT130I CCWGG 1 cut(s) 351
BciVI GTATCC 1 cut(s) 440
BcoDI GTCTC 1 cut(s) 532
BfaI CTAG 3 cut(s) 143, 246, 563
BfuI GTATCC 1 cut(s) 440
BisI GCNGC 2 cut(s) 67, 99
BlpI GCTNAGC 2 cut(s) 321, 399
BlsI GCNGC 2 cut(s) 68, 100
Bme1390I CCNGG 1 cut(s) 351
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 3 cut(s) 12, 85, 322
BpiI GAAGAC 1 cut(s) 46
Bpu1102I GCTNAGC 2 cut(s) 321, 399
Bsa29I ATCGAT 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 70, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 589
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 2 cut(s) 126, 262
BseBI CCWGG 1 cut(s) 351
BseCI ATCGAT 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 70, 109
BseLI CCNNNNNNNGG 1 cut(s) 589
BseMII CTCAG 2 cut(s) 303, 413
BseNI ACTGG 2 cut(s) 126, 262
BseRI GAGGAG 1 cut(s) 625
BseXI GCAGC 2 cut(s) 78, 85
BshVI ATCGAT 1 cut(s) 20
BsiSI CCGG 1 cut(s) 422
BslI CCNNNNNNNGG 1 cut(s) 589
BsmAI GTCTC 1 cut(s) 532
BsmBI CGTCTC 1 cut(s) 532
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 2 cut(s) 139, 519
Bsp1720I GCTNAGC 2 cut(s) 321, 399
BspACI CCGC 1 cut(s) 531
BspCNI CTCAG 2 cut(s) 304, 412
BspDI ATCGAT 1 cut(s) 20
BspHI TCATGA 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 2 cut(s) 126, 262
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 2 cut(s) 70, 109
BssMI GATC 2 cut(s) 139, 519
BssNAI GTATAC 1 cut(s) 410
BssSI CACGAG 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 70
Bst1107I GTATAC 1 cut(s) 410
Bst2BI CACGAG 1 cut(s) 513
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 2 cut(s) 74, 636
BstAPI GCANNNNNTGC 1 cut(s) 539
BstDEI CTNAG 3 cut(s) 312, 321, 399
BstKTI GATC 2 cut(s) 142, 522
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 2 cut(s) 139, 519
BstMWI GCNNNNNNNGC 5 cut(s) 72, 81, 317, 341, 539
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 349
BstV1I GCAGC 2 cut(s) 78, 85
BstV2I GAAGAC 1 cut(s) 46
BstZ17I GTATAC 1 cut(s) 410
Bsu15I ATCGAT 1 cut(s) 20
BsuI GTATCC 1 cut(s) 440
BsuTUI ATCGAT 1 cut(s) 20
CciI TCATGA 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 421
ClaI ATCGAT 1 cut(s) 20
CsiI ACCWGGT 1 cut(s) 349
CviAII CATG 5 cut(s) 197, 212, 241, 413, 584
DdeI CTNAG 3 cut(s) 312, 321, 399
DpnI GATC 2 cut(s) 141, 521
DpnII GATC 2 cut(s) 139, 519
DrdI GACNNNNNNGTC 1 cut(s) 482
DseDI GACNNNNNNGTC 1 cut(s) 482
Eam1104I CTCTTC 2 cut(s) 74, 636
EarI CTCTTC 2 cut(s) 74, 636
Eco130I CCWWGG 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 532
FaeI CATG 5 cut(s) 200, 215, 244, 416, 587
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FatI CATG 5 cut(s) 196, 211, 240, 412, 583
FblI GTMKAC 1 cut(s) 409
Fnu4HI GCNGC 2 cut(s) 67, 99
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 2 cut(s) 67, 99
FspBI CTAG 3 cut(s) 143, 246, 563
GluI GCNGC 2 cut(s) 67, 99
HapII CCGG 1 cut(s) 422
Hin1II CATG 5 cut(s) 200, 215, 244, 416, 587
HincII GTYRAC 2 cut(s) 106, 255
HindII GTYRAC 2 cut(s) 106, 255
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 3 cut(s) 17, 45, 222
HpaII CCGG 1 cut(s) 422
HphI GGTGA 3 cut(s) 26, 272, 565
Hpy166II GTNNAC 3 cut(s) 106, 255, 410
Hpy188I TCNGA 3 cut(s) 41, 331, 640
Hpy188III TCNNGA 2 cut(s) 197, 515
Hpy8I GTNNAC 3 cut(s) 106, 255, 410
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 5 cut(s) 25, 290, 298, 575, 596
HpyF10VI GCNNNNNNNGC 5 cut(s) 72, 81, 317, 341, 539
HpyF3I CTNAG 3 cut(s) 312, 321, 399
Hsp92II CATG 5 cut(s) 200, 215, 244, 416, 587
Kzo9I GATC 2 cut(s) 139, 519
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 6 cut(s) 107, 243, 336, 363, 435, 536
Lsp1109I GCAGC 2 cut(s) 78, 85
LweI GCATC 3 cut(s) 12, 85, 322
MabI ACCWGGT 1 cut(s) 349
MaeI CTAG 3 cut(s) 143, 246, 563
MaeIII GTNAC 2 cut(s) 86, 629
MalI GATC 2 cut(s) 141, 521
MboI GATC 2 cut(s) 139, 519
MboII GAAGA 5 cut(s) 46, 54, 91, 383, 500
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 1 cut(s) 374
MnlI CCTC 5 cut(s) 119, 146, 248, 559, 646
MslI CAYNNNNRTG 2 cut(s) 201, 330
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 5 cut(s) 72, 81, 317, 341, 539
NdeII GATC 2 cut(s) 139, 519
NlaIII CATG 5 cut(s) 200, 215, 244, 416, 587
NmeAIII GCCGAG 1 cut(s) 90
PagI TCATGA 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 74
PfeI GAWTC 3 cut(s) 17, 45, 222
PkrI GCNGC 2 cut(s) 68, 100
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
RseI CAYNNNNRTG 2 cut(s) 201, 330
SapI GCTCTTC 1 cut(s) 74
SatI GCNGC 2 cut(s) 67, 99
Sau3AI GATC 2 cut(s) 139, 519
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 1 cut(s) 400
SexAI ACCWGGT 1 cut(s) 349
SfaNI GCATC 3 cut(s) 12, 85, 322
SmiMI CAYNNNNRTG 2 cut(s) 201, 330
Sse9I AATT 1 cut(s) 374
SsiI CCGC 1 cut(s) 531
SspI AATATT 1 cut(s) 136
SspMI CTAG 3 cut(s) 143, 246, 563
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 2 cut(s) 20, 486
TasI AATT 1 cut(s) 374
TfiI GAWTC 3 cut(s) 17, 45, 222
TseI GCWGC 2 cut(s) 66, 98
TspDTI ATGAA 3 cut(s) 185, 460, 600
TspGWI ACGGA 1 cut(s) 637
XmiI GTMKAC 1 cut(s) 409
XspI CTAG 3 cut(s) 143, 246, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.