pycom04g09180
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
11585697 .. 11589263
3567 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09180.1

Sequence Viewer

Length: 660 bp
ATGGAGATTGAGAGTGAAATGCAGCAGCAATCCAGGTTTAGGAGGATTTGTGTGTTTTGTGGGAGCAGCCAAGGGAAGAAGAGCAGCTACCAGGATGCTGCCATTGAGCTTGGCAAAGAACTGGTTTCAAGGAACATTGATCTGGTGTATGGAGGGGGCAGCATAGGACTGATGGGTTTGGTTTCACAAGCTGTTCATGATGGTGGTCGCCATGTCATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGAGATAACTGGTGAGACTGTGGGGGAAGTGAAGGCAGTTGCAGGCATGCATCAAAGAAAGGCAGAGATGGCTAAGCACTCGGATGCTTTTATTGCCTTGCCCGGTGGTTATGGAACTCTGGAAGAGTTACTTGAAGTCATCACATGGGCTCAGCTTGGAATTCATGACAAGCCAGTGGGATTGCTGAATGTCGATGGATACTACAATTCCTTGCTGTCGTTCATCGACAAGGCCGTGGAAGAGGGATTTGTTAGCCCGAGCGCACGCCACATAATTATATCGGCACCAACAGCCAAGGAGCTGGTGAAGAAACTGGAGGATTATGTCCCATGTCATGAAAGAGTTGCTCCAAAGTTGAATTGGGAGATAGAGCAGCTTGGCTACACACAAGAATATGACATCTCTAGGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

220

Amino Acids

24.13

Weight (kDa)

5.67

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 21 - 146 8.1e-15 SLOG cluster4 family
Lysine_decarbox PF03641 58 - 188 6.4e-50 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013801)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37210 AT2G37210 AT3G53450
fragaria_vesca FvH4_6g16020
malus_domestica MD04G1096700.v1.1 MD12G1117700.v1.1
prunus_persica Prupe.6G236000_v2.0.a1 Prupe.6G236000_v2.0.a1
pyrus_communis pycom04g09180 pycom12g11650
rosa_chinensis RchiOBHm_Chr3g0469741
rosa_laevigata RLG00000024325
rosa_multiflora Rmu_sc0010644.1_g000003
rosa_roxburghii Rroxscaffold_6G00411510
rosa_rugosa Rorug03G0103900
rosa_samantha Rh3AG153300
rosa_wichuraiana Rw3G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 532
AcsI RAATTY 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 39
AgsI TTSAA 3 cut(s) 129, 383, 607
AjnI CCWGG 2 cut(s) 32, 90
AluBI AGCT 6 cut(s) 87, 109, 191, 403, 550, 625
AluI AGCT 6 cut(s) 87, 109, 191, 403, 550, 625
Alw26I GTCTC 1 cut(s) 257
Ama87I CYCGRG 2 cut(s) 246, 505
AoxI GGCC 1 cut(s) 480
ApeKI GCWGC 7 cut(s) 22, 25, 66, 84, 98, 159, 622
ApoI RAATTY 1 cut(s) 408
AspLEI GCGC 1 cut(s) 512
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 2 cut(s) 272, 565
AvaI CYCGRG 2 cut(s) 246, 505
BanI GGYRCC 1 cut(s) 532
BanII GRGCYC 1 cut(s) 400
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BbvI GCAGC 7 cut(s) 34, 37, 78, 85, 96, 171, 634
BccI CCATC 4 cut(s) 166, 194, 310, 437
BceAI ACGGC 1 cut(s) 467
BciT130I CCWGG 2 cut(s) 34, 92
BciVI GTATCC 1 cut(s) 440
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 1 cut(s) 654
BfuI GTATCC 1 cut(s) 440
BisI GCNGC 7 cut(s) 23, 26, 67, 85, 99, 160, 623
BlpI GCTNAGC 2 cut(s) 321, 399
BlsI GCNGC 7 cut(s) 24, 27, 68, 86, 100, 161, 624
Bme1390I CCNGG 3 cut(s) 34, 92, 351
BmeT110I CYCGRG 2 cut(s) 246, 505
BmiI GGNNCC 1 cut(s) 534
BmrFI CCNGG 3 cut(s) 34, 92, 351
BmsI GCATC 3 cut(s) 85, 307, 322
BpmI CTGGAG 1 cut(s) 584
Bpu1102I GCTNAGC 2 cut(s) 321, 399
BpuMI CCSGG 1 cut(s) 351
BsaJI CCNNGG 3 cut(s) 70, 483, 543
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse1I ACTGG 4 cut(s) 126, 262, 422, 567
BseBI CCWGG 2 cut(s) 34, 92
BseDI CCNNGG 3 cut(s) 70, 483, 543
BseGI GGATG 2 cut(s) 100, 337
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 4 cut(s) 126, 262, 422, 567
BseXI GCAGC 7 cut(s) 34, 37, 78, 85, 96, 171, 634
BshFI GGCC 1 cut(s) 482
BshNI GGYRCC 1 cut(s) 532
BsiHKCI CYCGRG 2 cut(s) 246, 505
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 560
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 560
BsnI GGCC 1 cut(s) 482
BsoBI CYCGRG 2 cut(s) 246, 505
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 1 cut(s) 139
Bsp1720I GCTNAGC 2 cut(s) 321, 399
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 1 cut(s) 412
BspHI TCATGA 3 cut(s) 196, 412, 583
BspLI GGNNCC 1 cut(s) 534
BspQI GCTCTTC 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 532
BsrI ACTGG 4 cut(s) 126, 262, 422, 567
BssECI CCNNGG 3 cut(s) 70, 483, 543
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 2 cut(s) 70, 543
Bst2UI CCWGG 2 cut(s) 34, 92
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 3 cut(s) 74, 366, 483
BstC8I GCNNGC 3 cut(s) 292, 296, 514
BstDEI CTNAG 2 cut(s) 321, 399
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 2 cut(s) 100, 337
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 3 cut(s) 317, 341, 539
BstNI CCWGG 2 cut(s) 34, 92
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 3 cut(s) 32, 90, 349
BstV1I GCAGC 7 cut(s) 34, 37, 78, 85, 96, 171, 634
BstXI CCANNNNNNTGG 2 cut(s) 218, 550
BsuI GTATCC 1 cut(s) 440
BsuRI GGCC 1 cut(s) 482
BtgI CCRYGG 1 cut(s) 483
BtsCI GGATG 2 cut(s) 100, 337
BtsIMutI CAGTG 1 cut(s) 429
Cac8I GCNNGC 3 cut(s) 292, 296, 514
CciI TCATGA 3 cut(s) 196, 412, 583
CfoI GCGC 1 cut(s) 512
CseI GACGC 1 cut(s) 244
CviAII CATG 8 cut(s) 197, 212, 241, 295, 393, 413, 579, 584
DdeI CTNAG 2 cut(s) 321, 399
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 3 cut(s) 74, 366, 483
EarI CTCTTC 3 cut(s) 74, 366, 483
Eco130I CCWWGG 2 cut(s) 70, 543
Eco24I GRGCYC 1 cut(s) 400
Eco88I CYCGRG 2 cut(s) 246, 505
EcoRI GAATTC 1 cut(s) 408
EcoRII CCWGG 2 cut(s) 32, 90
EcoT14I CCWWGG 2 cut(s) 70, 543
EcoT22I ATGCAT 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 2 cut(s) 70, 543
FaeI CATG 8 cut(s) 200, 215, 244, 298, 396, 416, 582, 587
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 1 cut(s) 560
FatI CATG 8 cut(s) 196, 211, 240, 294, 392, 412, 578, 583
Fnu4HI GCNGC 7 cut(s) 23, 26, 67, 85, 99, 160, 623
FokI GGATG 2 cut(s) 107, 344
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 7 cut(s) 23, 26, 67, 85, 99, 160, 623
FspBI CTAG 1 cut(s) 654
GlaI GCGC 1 cut(s) 511
GluI GCNGC 7 cut(s) 23, 26, 67, 85, 99, 160, 623
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 1 cut(s) 482
HapII CCGG 1 cut(s) 351
HgaI GACGC 1 cut(s) 244
HhaI GCGC 1 cut(s) 512
Hin1II CATG 8 cut(s) 200, 215, 244, 298, 396, 416, 582, 587
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HpaII CCGG 1 cut(s) 351
HphI GGTGA 2 cut(s) 272, 565
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 5 cut(s) 197, 248, 368, 413, 584
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 3 cut(s) 22, 290, 298
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 341, 539
HpyF3I CTNAG 2 cut(s) 321, 399
Hsp92II CATG 8 cut(s) 200, 215, 244, 298, 396, 416, 582, 587
HspAI GCGC 1 cut(s) 510
Kzo9I GATC 1 cut(s) 139
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 3 cut(s) 63, 547, 601
Lsp1109I GCAGC 7 cut(s) 34, 37, 78, 85, 96, 171, 634
LweI GCATC 3 cut(s) 85, 307, 322
MaeI CTAG 1 cut(s) 654
MaeIII GTNAC 1 cut(s) 375
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 5 cut(s) 88, 91, 383, 500, 568
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 4 cut(s) 408, 454, 522, 607
MnlI CCTC 5 cut(s) 36, 146, 255, 484, 559
Mph1103I ATGCAT 1 cut(s) 300
MslI CAYNNNNRTG 2 cut(s) 201, 330
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 3 cut(s) 34, 92, 351
MvaI CCWGG 2 cut(s) 34, 92
MwoI GCNNNNNNNGC 3 cut(s) 317, 341, 539
NciI CCSGG 1 cut(s) 351
NdeII GATC 1 cut(s) 139
NlaIII CATG 8 cut(s) 200, 215, 244, 298, 396, 416, 582, 587
NlaIV GGNNCC 1 cut(s) 534
NsiI ATGCAT 1 cut(s) 300
NspI RCATGY 1 cut(s) 298
PaeI GCATGC 1 cut(s) 298
PaeR7I CTCGAG 1 cut(s) 246
PagI TCATGA 3 cut(s) 196, 412, 583
PciSI GCTCTTC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 480
PkrI GCNGC 7 cut(s) 24, 27, 68, 86, 100, 161, 624
Psp6I CCWGG 2 cut(s) 32, 90
PspGI CCWGG 2 cut(s) 32, 90
PspN4I GGNNCC 1 cut(s) 534
RseI CAYNNNNRTG 2 cut(s) 201, 330
SapI GCTCTTC 1 cut(s) 74
SatI GCNGC 7 cut(s) 23, 26, 67, 85, 99, 160, 623
Sau3AI GATC 1 cut(s) 139
ScrFI CCNGG 3 cut(s) 34, 92, 351
SduI GDGCHC 1 cut(s) 400
SetI ASST 8 cut(s) 38, 89, 111, 193, 405, 552, 627, 659
SfaNI GCATC 3 cut(s) 85, 307, 322
Sfr274I CTCGAG 1 cut(s) 246
SlaI CTCGAG 1 cut(s) 246
SmiMI CAYNNNNRTG 2 cut(s) 201, 330
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
SphI GCATGC 1 cut(s) 298
Sse9I AATT 4 cut(s) 408, 454, 522, 607
SspMI CTAG 1 cut(s) 654
StyD4I CCNGG 3 cut(s) 32, 90, 349
StyI CCWWGG 2 cut(s) 70, 543
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 3 cut(s) 247, 441, 474
TasI AATT 4 cut(s) 408, 454, 522, 607
TscAI CASTG 1 cut(s) 429
TseI GCWGC 7 cut(s) 22, 25, 66, 84, 98, 159, 622
TspDTI ATGAA 4 cut(s) 185, 401, 460, 600
TspRI CASTG 1 cut(s) 429
XapI RAATTY 1 cut(s) 408
XceI RCATGY 1 cut(s) 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 606
XhoI CTCGAG 1 cut(s) 246
XspI CTAG 1 cut(s) 654
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.